Gene info for GFF5316 in Variovorax sp. SCN45

Annotation: Diaminopimelate decarboxylase and/or diaminopimelate epimerase leader peptide
Type 1: Protein-coding gene
Located on scaffold scaffold00000013, - strand, nucleotides 193,460 to 193,687
See nucleotide sequence around GFF5316 or for all of scaffold scaffold00000013

Nearby Genes

500 ntGFF5311 and GFF5312 overlap by 4 nucleotidesGFF5312 and GFF5313 are separated by 116 nucleotidesGFF5313 and GFF5314 are separated by 28 nucleotidesGFF5314 and GFF5315 are separated by 18 nucleotidesGFF5315 and GFF5316 overlap by 4 nucleotidesGFF5316 and GFF5317 are separated by 63 nucleotidesGFF5317 and GFF5318 are separated by 9 nucleotidesGFF5318 and GFF5319 are separated by 239 nucleotidesGFF5319 and GFF5320 overlap by 4 nucleotidesGFF5320 and GFF5321 are separated by 6 nucleotides GFF5311 - Cytochrome c-type biogenesis protein Ccs1/ResB, at 186,892 to 189,012 GFF5311 GFF5312 - Cytochrome c-type biogenesis protein CcsA/ResC, at 189,009 to 190,325 GFF5312 GFF5313 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 190,442 to 191,467 GFF5313 GFF5314 - Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 191,496 to 192,155 GFF5314 GFF5315 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 192,174 to 193,463 GFF5315 GFF5316 - Diaminopimelate decarboxylase and/or diaminopimelate epimerase leader peptide, at 193,460 to 193,687 GFF5316 GFF5317 - Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS, at 193,751 to 194,083 GFF5317 GFF5318 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 194,093 to 196,504 GFF5318 GFF5319 - Type IV pilus biogenesis protein PilM, at 196,744 to 197,823 GFF5319 GFF5320 - Type IV pilus biogenesis protein PilN, at 197,820 to 198,443 GFF5320 GFF5321 - Type IV pilus biogenesis protein PilO, at 198,450 to 199,127 GFF5321
Locus Name Description Strand Phenotype
GFF5311 Cytochrome c-type biogenesis protein Ccs1/ResB + no data
GFF5312 Cytochrome c-type biogenesis protein CcsA/ResC + no data
GFF5313 Protein-methionine-sulfoxide reductase catalytic subunit MsrP + insig.
GFF5314 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ + insig.
GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) - no data
GFF5316 Diaminopimelate decarboxylase and/or diaminopimelate epimerase leader peptide - no data
GFF5317 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS + cofit
GFF5318 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) - cofit
GFF5319 Type IV pilus biogenesis protein PilM + strong
GFF5320 Type IV pilus biogenesis protein PilN + strong
GFF5321 Type IV pilus biogenesis protein PilO + strong

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