Gene info for PS417_25975 in Pseudomonas simiae WCS417

Updated annotation (from data): Acyl-CoA dehydrogenase (EC 1.3.8.7)
Rationale: Specifically important for: Sodium octanoate. presumably part of beta oxidation, but not sure why 2 different ones are required (could relate to different chain lengths) (SEED_correct)
Original annotation: acyl-CoA dehydrogenase
Type 1: Protein-coding gene
Located on scaffold CP007637, - strand, nucleotides 5,612,679 to 5,614,484
See nucleotide sequence around PS417_25975 or for all of scaffold CP007637

Other databases: NCBI, IMG: 2586033773, uniprot: A0A1N7UPP1

Nearby Genes

500 ntPS417_25950 and PS417_25955 are separated by 209 nucleotidesPS417_25955 and PS417_25960 are separated by 226 nucleotidesPS417_25960 and PS417_25965 are separated by 123 nucleotidesPS417_25965 and PS417_25970 are separated by 90 nucleotidesPS417_25970 and PS417_25975 are separated by 260 nucleotidesPS417_25975 and PS417_25980 are separated by 257 nucleotidesPS417_25980 and PS417_25985 are separated by 106 nucleotidesPS417_25985 and PS417_25990 overlap by 4 nucleotidesPS417_25990 and PS417_25995 overlap by 8 nucleotidesPS417_25995 and PS417_26000 overlap by 8 nucleotides PS417_25950: PS417_25950 - acetylornithine aminotransferase, at 5,604,769 to 5,606,031 _25950 PS417_25955: PS417_25955 - LysR family transcriptional regulator, at 5,606,241 to 5,607,140 _25955 PS417_25960: PS417_25960 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data), at 5,607,367 to 5,609,145 _25960 PS417_25965: PS417_25965 - acyl-CoA dehydrogenase, at 5,609,269 to 5,611,038 _25965 PS417_25970: PS417_25970 - diguanylate cyclase, at 5,611,129 to 5,612,418 _25970 PS417_25975: PS417_25975 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data), at 5,612,679 to 5,614,484 _25975 PS417_25980: PS417_25980 - pyrroloquinoline quinone biosynthesis protein PqqE, at 5,614,742 to 5,615,023 _25980 PS417_25985: PS417_25985 - dethiobiotin synthetase, at 5,615,130 to 5,615,810 _25985 PS417_25990: PS417_25990 - malonyl-CoA O-methyltransferase, at 5,615,807 to 5,616,619 _25990 PS417_25995: PS417_25995 - transporter, at 5,616,612 to 5,617,343 _25995 PS417_26000: PS417_26000 - 8-amino-7-oxononanoate synthase, at 5,617,336 to 5,618,517 _26000
Locus Name Description Strand Phenotype
PS417_25950 PS417_25950 acetylornithine aminotransferase - insig.
PS417_25955 PS417_25955 LysR family transcriptional regulator + insig.
PS417_25960 PS417_25960 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) - strong
PS417_25965 PS417_25965 acyl-CoA dehydrogenase - insig.
PS417_25970 PS417_25970 diguanylate cyclase - sig.
PS417_25975 PS417_25975 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) - strong
PS417_25980 PS417_25980 pyrroloquinoline quinone biosynthesis protein PqqE - no data
PS417_25985 PS417_25985 dethiobiotin synthetase - strong
PS417_25990 PS417_25990 malonyl-CoA O-methyltransferase - strong
PS417_25995 PS417_25995 transporter - no data
PS417_26000 PS417_26000 8-amino-7-oxononanoate synthase - strong

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