Gene info for PS417_24105 in Pseudomonas simiae WCS417

Updated annotation (from data): D-lactate transporter (lctP family)
Rationale: specific phenotype for D-lactate and no other transporter for D-lactate was apparent in the fitness data. Also important for utilization of D,L-lactate. Not clear if it transports L-lactate as well or not, but since it is in an apparent operon with a D-lactate dehydrogenase (PS417_24110), its main role is probably for transport of D-lactate.
Original annotation: L-lactate permease
Type 1: Protein-coding gene
Located on scaffold CP007637, + strand, nucleotides 5,218,053 to 5,219,747
See nucleotide sequence around PS417_24105 or for all of scaffold CP007637

Other databases: NCBI, IMG: 2586033408, uniprot: A0A1N7U1J6

Nearby Genes

500 ntPS417_24080 and PS417_24085 are separated by 63 nucleotidesPS417_24085 and PS417_24090 overlap by 8 nucleotidesPS417_24090 and PS417_24095 are separated by 168 nucleotidesPS417_24095 and PS417_24100 are separated by 36 nucleotidesPS417_24100 and PS417_24105 are separated by 252 nucleotidesPS417_24105 and PS417_24110 are separated by 69 nucleotidesPS417_24110 and PS417_24115 are separated by 151 nucleotidesPS417_24115 and PS417_24120 are separated by 688 nucleotidesPS417_24120 and PS417_24125 are separated by 165 nucleotidesPS417_24125 and PS417_24130 overlap by 4 nucleotides PS417_24080: PS417_24080 - membrane protein, at 5,215,025 to 5,215,552 _24080 PS417_24085: PS417_24085 - protein RnfH, at 5,215,616 to 5,215,918 _24085 PS417_24090: PS417_24090 - ribosome association toxin RatA, at 5,215,911 to 5,216,345 _24090 PS417_24095: PS417_24095 - SsrA-binding protein, at 5,216,514 to 5,216,996 _24095 PS417_24100: PS417_24100 - transcriptional regulator PdhR, at 5,217,033 to 5,217,800 _24100 PS417_24105: PS417_24105 - D-lactate transporter (lctP family) (from data), at 5,218,053 to 5,219,747 _24105 PS417_24110: PS417_24110 - 4Fe-4S ferredoxin, at 5,219,817 to 5,222,627 _24110 PS417_24115: PS417_24115 - hypothetical protein, at 5,222,779 to 5,223,057 _24115 PS417_24120: PS417_24120 - integrase, at 5,223,746 to 5,225,002 _24120 PS417_24125: PS417_24125 - hypothetical protein, at 5,225,168 to 5,225,437 _24125 PS417_24130: PS417_24130 - integrase, at 5,225,434 to 5,226,414 _24130
Locus Name Description Strand Phenotype
PS417_24080 PS417_24080 membrane protein + no data
PS417_24085 PS417_24085 protein RnfH - insig.
PS417_24090 PS417_24090 ribosome association toxin RatA - no data
PS417_24095 PS417_24095 SsrA-binding protein + no data
PS417_24100 PS417_24100 transcriptional regulator PdhR - strong
PS417_24105 PS417_24105 D-lactate transporter (lctP family) (from data) + strong
PS417_24110 PS417_24110 4Fe-4S ferredoxin + strong
PS417_24115 PS417_24115 hypothetical protein + insig.
PS417_24120 PS417_24120 integrase + insig.
PS417_24125 PS417_24125 hypothetical protein - insig.
PS417_24130 PS417_24130 integrase - insig.

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