Gene info for GFF3890 in Variovorax sp. SCN45

Annotation: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Type 1: Protein-coding gene
Located on scaffold scaffold00000008, - strand, nucleotides 88,831 to 90,252
See nucleotide sequence around GFF3890 or for all of scaffold scaffold00000008

Nearby Genes

500 ntGFF3885 and GFF3886 are separated by 30 nucleotidesGFF3886 and GFF3887 are separated by 168 nucleotidesGFF3887 and GFF3888 are separated by 89 nucleotidesGFF3888 and GFF3889 are separated by 36 nucleotidesGFF3889 and GFF3890 are separated by 16 nucleotidesGFF3890 and GFF3891 are separated by 49 nucleotidesGFF3891 and GFF3892 overlap by 4 nucleotidesGFF3892 and GFF3893 are separated by 106 nucleotidesGFF3893 and GFF3894 are separated by 79 nucleotidesGFF3894 and GFF3895 are separated by 24 nucleotides GFF3885 - tRNA pseudouridine(38-40) synthase (EC 5.4.99.12), at 81,934 to 82,746 GFF3885 GFF3886 - Putative transmembrane protein, at 82,777 to 85,605 GFF3886 GFF3887 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 85,774 to 86,943 GFF3887 GFF3888 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 87,033 to 88,121 GFF3888 GFF3889 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 88,158 to 88,814 GFF3889 GFF3890 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 88,831 to 90,252 GFF3890 GFF3891 - Transcriptional regulator, LysR family, at 90,302 to 91,246 GFF3891 GFF3892 - no description, at 91,243 to 91,359 GFF3892 GFF3893 - hypothetical protein, at 91,466 to 96,505 GFF3893 GFF3894 - Citrate synthase (si) (EC 2.3.3.1), at 96,585 to 97,895 GFF3894 GFF3895 - Succinate dehydrogenase flavin-adding protein, antitoxin of CptAB toxin-antitoxin, at 97,920 to 98,234 GFF3895
Locus Name Description Strand Phenotype
GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) - sig.
GFF3886 Putative transmembrane protein - strong
GFF3887 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) - no data
GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) - strong
GFF3889 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) - cofit
GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) - strong
GFF3891 Transcriptional regulator, LysR family - cofit
GFF3892 no description - insig.
GFF3893 hypothetical protein + insig.
GFF3894 Citrate synthase (si) (EC 2.3.3.1) - no data
GFF3895 Succinate dehydrogenase flavin-adding protein, antitoxin of CptAB toxin-antitoxin - no data

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