Gene info for GFF3847 in Variovorax sp. SCN45

Annotation: LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24)
Type 1: Protein-coding gene
Located on scaffold scaffold00000008, + strand, nucleotides 47,934 to 49,046
See nucleotide sequence around GFF3847 or for all of scaffold scaffold00000008

Nearby Genes

500 ntGFF3842 and GFF3843 are separated by 6 nucleotidesGFF3843 and GFF3844 are separated by 108 nucleotidesGFF3844 and GFF3845 are separated by 47 nucleotidesGFF3845 and GFF3846 are separated by 6 nucleotidesGFF3846 and GFF3847 are separated by 272 nucleotidesGFF3847 and GFF3848 overlap by 8 nucleotidesGFF3848 and GFF3849 are separated by 21 nucleotidesGFF3849 and GFF3850 are separated by 1 nucleotidesGFF3850 and GFF3851 are separated by 4 nucleotidesGFF3851 and GFF3852 are separated by 2 nucleotides GFF3842 - Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 40,304 to 41,587 GFF3842 GFF3843 - Uncharacterized MFS-type transporter, at 41,594 to 43,162 GFF3843 GFF3844 - Transcriptional regulator, LysR family, at 43,271 to 44,137 GFF3844 GFF3845 - Ribonuclease E (EC 3.1.26.12), at 44,185 to 47,391 GFF3845 GFF3846 - hypothetical protein, at 47,398 to 47,661 GFF3846 GFF3847 - LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24), at 47,934 to 49,046 GFF3847 GFF3848 - Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C, at 49,039 to 49,710 GFF3848 GFF3849 - Iron-sulfur cluster-binding protein, Rieske family, at 49,732 to 50,100 GFF3849 GFF3850 - Periplasmic serine proteases (ClpP class), at 50,102 to 51,118 GFF3850 GFF3851 - Uncharacterized MFS-type transporter, at 51,123 to 52,274 GFF3851 GFF3852 - Tetrapyrrole methylase family protein, at 52,277 to 53,038 GFF3852
Locus Name Description Strand Phenotype
GFF3842 Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives) + cofit
GFF3843 Uncharacterized MFS-type transporter - insig.
GFF3844 Transcriptional regulator, LysR family + insig.
GFF3845 Ribonuclease E (EC 3.1.26.12) - cofit
GFF3846 hypothetical protein + no data
GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) + insig.
GFF3848 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C + insig.
GFF3849 Iron-sulfur cluster-binding protein, Rieske family + insig.
GFF3850 Periplasmic serine proteases (ClpP class) + insig.
GFF3851 Uncharacterized MFS-type transporter - insig.
GFF3852 Tetrapyrrole methylase family protein - insig.

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