Gene info for GFF3821 in Variovorax sp. SCN45

Annotation: RND efflux system, inner membrane transporter
Type 1: Protein-coding gene
Located on scaffold scaffold00000008, - strand, nucleotides 7,142 to 10,312
See nucleotide sequence around GFF3821 or for all of scaffold scaffold00000008

Nearby Genes

500 ntGFF3816 and GFF3817 are separated by 28 nucleotidesGFF3817 and GFF3818 are separated by 163 nucleotidesGFF3818 and GFF3819 are separated by 49 nucleotidesGFF3819 and GFF3820 are separated by 5 nucleotidesGFF3820 and GFF3821 overlap by 1 nucleotidesGFF3821 and GFF3822 are separated by 9 nucleotidesGFF3822 and GFF3823 are separated by 198 nucleotidesGFF3823 and GFF3824 are separated by 27 nucleotidesGFF3824 and GFF3825 are separated by 131 nucleotidesGFF3825 and GFF3826 overlap by 4 nucleotides GFF3816 - hypothetical protein, at 2,251 to 3,021 GFF3816 GFF3817 - RNA polymerase sigma factor, at 3,050 to 3,643 GFF3817 GFF3818 - hypothetical protein, at 3,807 to 4,346 GFF3818 GFF3819 - hypothetical protein, at 4,396 to 5,703 GFF3819 GFF3820 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 5,709 to 7,142 GFF3820 GFF3821 - RND efflux system, inner membrane transporter, at 7,142 to 10,312 GFF3821 GFF3822 - RND efflux system, membrane fusion protein, at 10,322 to 11,566 GFF3822 GFF3823 - FIG00581576: hypothetical protein, at 11,765 to 13,234 GFF3823 GFF3824 - Argininosuccinate lyase (EC 4.3.2.1), at 13,262 to 14,659 GFF3824 GFF3825 - Autolysin sensor kinase (EC 2.7.3.-), at 14,791 to 15,789 GFF3825 GFF3826 - Response regulator receiver:LytTr DNA-binding region, at 15,786 to 16,541 GFF3826
Locus Name Description Strand Phenotype
GFF3816 hypothetical protein - insig.
GFF3817 RNA polymerase sigma factor - insig.
GFF3818 hypothetical protein + insig.
GFF3819 hypothetical protein + insig.
GFF3820 Efflux transport system, outer membrane factor (OMF) lipoprotein - insig.
GFF3821 RND efflux system, inner membrane transporter - insig.
GFF3822 RND efflux system, membrane fusion protein - insig.
GFF3823 FIG00581576: hypothetical protein - insig.
GFF3824 Argininosuccinate lyase (EC 4.3.2.1) - no data
GFF3825 Autolysin sensor kinase (EC 2.7.3.-) + strong
GFF3826 Response regulator receiver:LytTr DNA-binding region + strong

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