Gene info for GFF2842 in Variovorax sp. SCN45

Annotation: RNA polymerase sigma factor RpoS
Type 1: Protein-coding gene
Located on scaffold scaffold00000005, - strand, nucleotides 267,106 to 268,152
See nucleotide sequence around GFF2842 or for all of scaffold scaffold00000005

Nearby Genes

500 ntGFF2837 and GFF2838 are separated by 94 nucleotidesGFF2838 and GFF2839 are separated by 183 nucleotidesGFF2839 and GFF2840 are separated by 193 nucleotidesGFF2840 and GFF2841 are separated by 59 nucleotidesGFF2841 and GFF2842 are separated by 41 nucleotidesGFF2842 and GFF2843 are separated by 4 nucleotidesGFF2843 and GFF2844 are separated by 11 nucleotidesGFF2844 and GFF2845 are separated by 1 nucleotidesGFF2845 and GFF2846 are separated by 127 nucleotidesGFF2846 and GFF2847 are separated by 87 nucleotides GFF2837 - Biopolymer transport protein ExbD/TolR, at 263,362 to 263,775 GFF2837 GFF2838 - hypothetical protein, at 263,870 to 264,082 GFF2838 GFF2839 - Protein GlcG, at 264,266 to 264,673 GFF2839 GFF2840 - Integral membrane protein, interacts with FtsH, at 264,867 to 265,568 GFF2840 GFF2841 - 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190), at 265,628 to 267,064 GFF2841 GFF2842 - RNA polymerase sigma factor RpoS, at 267,106 to 268,152 GFF2842 GFF2843 - Murein hydrolase activator NlpD, at 268,157 to 269,068 GFF2843 GFF2844 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 269,080 to 269,853 GFF2844 GFF2845 - 5'-nucleotidase SurE (EC 3.1.3.5), at 269,855 to 270,613 GFF2845 GFF2846 - Putative Zn-dependent oxidoreductase PA5234, at 270,741 to 271,727 GFF2846 GFF2847 - histone-like nucleoid-structuring protein H-NS, at 271,815 to 272,159 GFF2847
Locus Name Description Strand Phenotype
GFF2837 Biopolymer transport protein ExbD/TolR + no data
GFF2838 hypothetical protein + insig.
GFF2839 Protein GlcG - insig.
GFF2840 Integral membrane protein, interacts with FtsH + insig.
GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) - cofit
GFF2842 RNA polymerase sigma factor RpoS - insig.
GFF2843 Murein hydrolase activator NlpD - strong
GFF2844 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) - strong
GFF2845 5'-nucleotidase SurE (EC 3.1.3.5) - cofit
GFF2846 Putative Zn-dependent oxidoreductase PA5234 + cofit
GFF2847 histone-like nucleoid-structuring protein H-NS - strong

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