Gene info for PS417_12555 in Pseudomonas simiae WCS417

Updated annotation (from data): phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43)
Rationale: Variably important for glucose utilization, especially with nitrogen sources other than ammonia. 72% identical to the characterized KguD from P.putida (PP3376, see PMC4646247)
Original annotation: bifunctional glyoxylate/hydroxypyruvate reductase B
Type 1: Protein-coding gene
Located on scaffold CP007637, - strand, nucleotides 2,731,682 to 2,732,659
See nucleotide sequence around PS417_12555 or for all of scaffold CP007637

Other databases: NCBI, IMG: 2586031145, uniprot: A0A1N7U644

Nearby Genes

500 ntPS417_12530 and PS417_12535 are separated by 81 nucleotidesPS417_12535 and PS417_12540 are separated by 39 nucleotidesPS417_12540 and PS417_12545 are separated by 12 nucleotidesPS417_12545 and PS417_12550 are separated by 235 nucleotidesPS417_12550 and PS417_12555 are separated by 131 nucleotidesPS417_12555 and PS417_12560 overlap by 4 nucleotidesPS417_12560 and PS417_12565 are separated by 45 nucleotidesPS417_12565 and PS417_12570 overlap by 8 nucleotidesPS417_12570 and PS417_12580 are separated by 1430 nucleotidesPS417_12580 and PS417_12585 are separated by 151 nucleotides PS417_12530: PS417_12530 - LysR family transcriptional regulator, at 2,725,847 to 2,726,740 _12530 PS417_12535: PS417_12535 - nitrilase, at 2,726,822 to 2,727,748 _12535 PS417_12540: PS417_12540 - hypothetical protein, at 2,727,788 to 2,728,249 _12540 PS417_12545: PS417_12545 - xanthine permease XanP, at 2,728,262 to 2,729,689 _12545 PS417_12550: PS417_12550 - chemotaxis protein, at 2,729,925 to 2,731,550 _12550 PS417_12555: PS417_12555 - phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data), at 2,731,682 to 2,732,659 _12555 PS417_12560: PS417_12560 - MFS transporter, at 2,732,656 to 2,733,948 _12560 PS417_12565: PS417_12565 - 2-dehydro-3-deoxygluconokinase, at 2,733,994 to 2,734,935 _12565 PS417_12570: PS417_12570 - AP endonuclease, at 2,734,928 to 2,735,710 _12570 PS417_12580: PS417_12580 - membrane protein, at 2,737,141 to 2,737,782 _12580 PS417_12585: PS417_12585 - acriflavine resistance protein B, at 2,737,934 to 2,741,026 _12585
Locus Name Description Strand Phenotype
PS417_12530 PS417_12530 LysR family transcriptional regulator - insig.
PS417_12535 PS417_12535 nitrilase + insig.
PS417_12540 PS417_12540 hypothetical protein - insig.
PS417_12545 PS417_12545 xanthine permease XanP - insig.
PS417_12550 PS417_12550 chemotaxis protein + cofit
PS417_12555 PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) - strong
PS417_12560 PS417_12560 MFS transporter - strong
PS417_12565 PS417_12565 2-dehydro-3-deoxygluconokinase - sig.
PS417_12570 PS417_12570 AP endonuclease - strong
PS417_12580 PS417_12580 membrane protein - insig.
PS417_12585 PS417_12585 acriflavine resistance protein B - strong

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