Gene info for PS417_11015 in Pseudomonas simiae WCS417

Updated annotation (from data): Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26)
Rationale: Specifically important for: L-Arabinose. alpha-ketoglutarate semialdehyde is an intermediate in the oxidation of L-arabinose (SEED_correct)
Original annotation: ketoglutarate semialdehyde dehydrogenase
Type 1: Protein-coding gene
Located on scaffold CP007637, + strand, nucleotides 2,360,549 to 2,362,129
See nucleotide sequence around PS417_11015 or for all of scaffold CP007637

Other databases: NCBI, IMG: 2586030842, uniprot: A0A1N7UGH9

Nearby Genes

500 ntPS417_10990 and PS417_10995 are separated by 155 nucleotidesPS417_10995 and PS417_11000 are separated by 48 nucleotidesPS417_11000 and PS417_11005 are separated by 192 nucleotidesPS417_11005 and PS417_11010 are separated by 15 nucleotidesPS417_11010 and PS417_11015 are separated by 10 nucleotidesPS417_11015 and PS417_11020 are separated by 36 nucleotidesPS417_11020 and PS417_11025 are separated by 37 nucleotidesPS417_11025 and PS417_11030 overlap by 4 nucleotidesPS417_11030 and PS417_11035 are separated by 9 nucleotidesPS417_11035 and PS417_11040 are separated by 53 nucleotides PS417_10990: PS417_10990 - TonB-dependent receptor, at 2,353,238 to 2,355,355 _10990 PS417_10995: PS417_10995 - GntR family transcriptional regulator, at 2,355,511 to 2,356,233 _10995 PS417_11000: PS417_11000 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 2,356,282 to 2,358,018 _11000 PS417_11005: PS417_11005 - L-arabinose transporter (from data), at 2,358,211 to 2,359,533 _11005 PS417_11010: PS417_11010 - FAH family protein, at 2,359,549 to 2,360,538 _11010 PS417_11015: PS417_11015 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data), at 2,360,549 to 2,362,129 _11015 PS417_11020: PS417_11020 - L-arabinolactonase (EC 3.1.1.15) (from data), at 2,362,166 to 2,363,029 _11020 PS417_11025: PS417_11025 - sugar ABC transporter substrate-binding protein, at 2,363,067 to 2,364,071 _11025 PS417_11030: PS417_11030 - L-arabinose transporter ATP-binding protein, at 2,364,068 to 2,365,570 _11030 PS417_11035: PS417_11035 - arabinose ABC transporter permease, at 2,365,580 to 2,366,548 _11035 PS417_11040: PS417_11040 - aldose epimerase, at 2,366,602 to 2,367,750 _11040
Locus Name Description Strand Phenotype
PS417_10990 PS417_10990 TonB-dependent receptor + insig.
PS417_10995 PS417_10995 GntR family transcriptional regulator - strong
PS417_11000 PS417_11000 L-arabonate dehydratase (EC 4.2.1.25) (from data) - strong
PS417_11005 PS417_11005 L-arabinose transporter (from data) + strong
PS417_11010 PS417_11010 FAH family protein + strong
PS417_11015 PS417_11015 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) + strong
PS417_11020 PS417_11020 L-arabinolactonase (EC 3.1.1.15) (from data) + strong
PS417_11025 PS417_11025 sugar ABC transporter substrate-binding protein + sig.
PS417_11030 PS417_11030 L-arabinose transporter ATP-binding protein + sig.
PS417_11035 PS417_11035 arabinose ABC transporter permease + no data
PS417_11040 PS417_11040 aldose epimerase - insig.

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