Gene info for PS417_10945 in Pseudomonas simiae WCS417

Updated annotation (from data): Xylose isomerase (EC 5.3.1.5)
Rationale: Specifically important for utilizing D-Xylose. Automated validation from mutant phenotype: the predicted function (XYLISOM-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: xylose isomerase
Type 1: Protein-coding gene
Located on scaffold CP007637, - strand, nucleotides 2,341,609 to 2,342,925
See nucleotide sequence around PS417_10945 or for all of scaffold CP007637

Other databases: NCBI, IMG: 2586030829, uniprot: A0A1N7TWS3

Nearby Genes

500 ntPS417_10920 and PS417_10925 are separated by 109 nucleotidesPS417_10925 and PS417_10930 are separated by 232 nucleotidesPS417_10930 and PS417_10935 are separated by 0 nucleotidesPS417_10935 and PS417_10940 overlap by 4 nucleotidesPS417_10940 and PS417_10945 are separated by 101 nucleotidesPS417_10945 and PS417_10950 are separated by 139 nucleotidesPS417_10950 and PS417_10955 overlap by 4 nucleotidesPS417_10955 and PS417_10960 are separated by 57 nucleotidesPS417_10960 and PS417_10965 are separated by 210 nucleotidesPS417_10965 and PS417_10970 are separated by 145 nucleotides PS417_10920: PS417_10920 - LysR family transcriptional regulator, at 2,335,033 to 2,335,974 _10920 PS417_10925: PS417_10925 - malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data), at 2,336,084 to 2,337,583 _10925 PS417_10930: PS417_10930 - D-xylose ABC transporter permease, at 2,337,816 to 2,338,952 _10930 PS417_10935: PS417_10935 - xylose transporter, at 2,338,953 to 2,340,509 _10935 PS417_10940: PS417_10940 - sugar ABC transporter substrate-binding protein, at 2,340,506 to 2,341,507 _10940 PS417_10945: PS417_10945 - Xylose isomerase (EC 5.3.1.5) (from data), at 2,341,609 to 2,342,925 _10945 PS417_10950: PS417_10950 - AraC family transcriptional regulator, at 2,343,065 to 2,344,240 _10950 PS417_10955: PS417_10955 - porin, at 2,344,237 to 2,345,502 _10955 PS417_10960: PS417_10960 - quinate dehydrogenase, at 2,345,560 to 2,347,968 _10960 PS417_10965: PS417_10965 - chemotaxis protein, at 2,348,179 to 2,350,122 _10965 PS417_10970: PS417_10970 - effector protein, at 2,350,268 to 2,351,158 _10970
Locus Name Description Strand Phenotype
PS417_10920 PS417_10920 LysR family transcriptional regulator - insig.
PS417_10925 PS417_10925 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) + strong
PS417_10930 PS417_10930 D-xylose ABC transporter permease - insig.
PS417_10935 PS417_10935 xylose transporter - insig.
PS417_10940 PS417_10940 sugar ABC transporter substrate-binding protein - insig.
PS417_10945 PS417_10945 Xylose isomerase (EC 5.3.1.5) (from data) - strong
PS417_10950 PS417_10950 AraC family transcriptional regulator + strong
PS417_10955 PS417_10955 porin - insig.
PS417_10960 PS417_10960 quinate dehydrogenase - insig.
PS417_10965 PS417_10965 chemotaxis protein - strong
PS417_10970 PS417_10970 effector protein - insig.

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