Gene info for PS417_10885 in Pseudomonas simiae WCS417

Updated annotation (from data): Deoxyribose 1-dehydrogenase, beta subunit
Rationale: Specifically important in carbon source 2-Deoxy-D-Ribose; not required for deoxyribonoate utilization; related to iorB
Original annotation: isoquinoline 1-oxidoreductase
Type 1: Protein-coding gene
Located on scaffold CP007637, - strand, nucleotides 2,326,573 to 2,328,792
See nucleotide sequence around PS417_10885 or for all of scaffold CP007637

Other databases: NCBI, IMG: 2586030817, uniprot: A0A1N7UDX6

Nearby Genes

500 ntPS417_10860 and PS417_10865 are separated by 277 nucleotidesPS417_10865 and PS417_10870 are separated by 259 nucleotidesPS417_10870 and PS417_10875 overlap by 4 nucleotidesPS417_10875 and PS417_10880 are separated by 2 nucleotidesPS417_10880 and PS417_10885 are separated by 16 nucleotidesPS417_10885 and PS417_10890 overlap by 1 nucleotidesPS417_10890 and PS417_10895 are separated by 151 nucleotidesPS417_10895 and PS417_10900 are separated by 262 nucleotidesPS417_10900 and PS417_10905 are separated by 47 nucleotidesPS417_10905 and PS417_10910 overlap by 1 nucleotides PS417_10860: PS417_10860 - flagellar basal body rod protein FlgG, at 2,320,950 to 2,321,735 _10860 PS417_10865: PS417_10865 - GNAT family acetyltransferase, at 2,322,013 to 2,322,468 _10865 PS417_10870: PS417_10870 - GABA permease, at 2,322,728 to 2,324,137 _10870 PS417_10875: PS417_10875 - AraC family transcriptional regulator, at 2,324,134 to 2,325,210 _10875 PS417_10880: PS417_10880 - cytochrome c component of deoxyribose dehydrogenase (from data), at 2,325,213 to 2,326,556 _10880 PS417_10885: PS417_10885 - Deoxyribose 1-dehydrogenase, beta subunit (from data), at 2,326,573 to 2,328,792 _10885 PS417_10890: PS417_10890 - Deoxyribose 1-dehydrogenase, alpha subunit (from data), at 2,328,792 to 2,329,247 _10890 PS417_10895: PS417_10895 - AMP-dependent synthetase, at 2,329,399 to 2,331,099 _10895 PS417_10900: PS417_10900 - ABC transporter substrate-binding protein, at 2,331,362 to 2,332,138 _10900 PS417_10905: PS417_10905 - hypothetical protein, at 2,332,186 to 2,332,812 _10905 PS417_10910: PS417_10910 - FAD-dependent oxidoreductase, at 2,332,812 to 2,333,945 _10910
Locus Name Description Strand Phenotype
PS417_10860 PS417_10860 flagellar basal body rod protein FlgG - insig.
PS417_10865 PS417_10865 GNAT family acetyltransferase - strong
PS417_10870 PS417_10870 GABA permease + insig.
PS417_10875 PS417_10875 AraC family transcriptional regulator + insig.
PS417_10880 PS417_10880 cytochrome c component of deoxyribose dehydrogenase (from data) - sig.
PS417_10885 PS417_10885 Deoxyribose 1-dehydrogenase, beta subunit (from data) - strong
PS417_10890 PS417_10890 Deoxyribose 1-dehydrogenase, alpha subunit (from data) - strong
PS417_10895 PS417_10895 AMP-dependent synthetase - sig.
PS417_10900 PS417_10900 ABC transporter substrate-binding protein + insig.
PS417_10905 PS417_10905 hypothetical protein - insig.
PS417_10910 PS417_10910 FAD-dependent oxidoreductase - insig.

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