Gene info for GFF2023 in Variovorax sp. SCN45

Annotation: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Type 1: Protein-coding gene
Located on scaffold scaffold00000004, + strand, nucleotides 67,230 to 68,150
See nucleotide sequence around GFF2023 or for all of scaffold scaffold00000004

Nearby Genes

500 ntGFF2018 and GFF2019 overlap by 4 nucleotidesGFF2019 and GFF2020 are separated by 33 nucleotidesGFF2020 and GFF2021 are separated by 127 nucleotidesGFF2021 and GFF2022 overlap by 4 nucleotidesGFF2022 and GFF2023 are separated by 137 nucleotidesGFF2023 and GFF2024 are separated by 3 nucleotidesGFF2024 and GFF2025 are separated by 15 nucleotidesGFF2025 and GFF2026 overlap by 4 nucleotidesGFF2026 and GFF2027 overlap by 4 nucleotidesGFF2027 and GFF2028 are separated by 181 nucleotides GFF2018 - Transcriptional regulator, IclR family, at 62,378 to 63,127 GFF2018 GFF2019 - FIG00976956: hypothetical protein, at 63,124 to 63,519 GFF2019 GFF2020 - BUG/TctC family periplasmic protein, at 63,553 to 64,575 GFF2020 GFF2021 - FIG00538369: hypothetical protein, at 64,703 to 65,926 GFF2021 GFF2022 - Acyl-CoA dehydrogenase, at 65,923 to 67,092 GFF2022 GFF2023 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 67,230 to 68,150 GFF2023 GFF2024 - L-lysine permease, at 68,154 to 68,795 GFF2024 GFF2025 - Uncharacterized protein SCO3165, at 68,811 to 69,299 GFF2025 GFF2026 - Predicted Fe-S protein, at 69,296 to 69,553 GFF2026 GFF2027 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 69,550 to 70,197 GFF2027 GFF2028 - Uncharacterized MFS-type transporter, at 70,379 to 72,073 GFF2028
Locus Name Description Strand Phenotype
GFF2018 Transcriptional regulator, IclR family + insig.
GFF2019 FIG00976956: hypothetical protein + insig.
GFF2020 BUG/TctC family periplasmic protein + insig.
GFF2021 FIG00538369: hypothetical protein + insig.
GFF2022 Acyl-CoA dehydrogenase + insig.
GFF2023 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) + insig.
GFF2024 L-lysine permease + insig.
GFF2025 Uncharacterized protein SCO3165 + insig.
GFF2026 Predicted Fe-S protein + no data
GFF2027 2-hydroxychromene-2-carboxylate isomerase family protein + cofit
GFF2028 Uncharacterized MFS-type transporter + insig.

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