Gene info for PS417_07265 in Pseudomonas simiae WCS417

Updated annotation (from data): 2-deoxy-D-ribonate transporter 1
Rationale: Specifically important for utilization of deoxyribose and deoxyribonate. Because deoxyribose is probably oxidized in the periplasm, this is probably a deoxyribonate transporter. It belongs to the MFS superfamily, and is in conserved proximity to other deoxyribonate utilization genes. Another putative transporter (PS417_07260) is also important for utilizing deoxyribose and deoxyribonate, which is not explained.
Original annotation: membrane protein
Type 1: Protein-coding gene
Located on scaffold CP007637, + strand, nucleotides 1,602,310 to 1,603,626
See nucleotide sequence around PS417_07265 or for all of scaffold CP007637

Other databases: NCBI, IMG: 2586030109, uniprot: A0A1N7TZ48

Nearby Genes

500 ntPS417_07240 and PS417_07245 overlap by 4 nucleotidesPS417_07245 and PS417_07250 are separated by 67 nucleotidesPS417_07250 and PS417_07255 are separated by 65 nucleotidesPS417_07255 and PS417_07260 are separated by 73 nucleotidesPS417_07260 and PS417_07265 are separated by 55 nucleotidesPS417_07265 and PS417_07270 are separated by 57 nucleotidesPS417_07270 and PS417_07275 are separated by 48 nucleotidesPS417_07275 and PS417_07280 are separated by 13 nucleotidesPS417_07280 and PS417_07285 are separated by 137 nucleotidesPS417_07285 and PS417_07290 are separated by 213 nucleotides PS417_07240: PS417_07240 - Transcriptional regulator of deoxyribose catabolism (from data), at 1,597,407 to 1,598,129 _07240 PS417_07245: PS417_07245 - 2-deoxy-D-ribonate 3-dehydrogenase (from data), at 1,598,126 to 1,598,914 _07245 PS417_07250: PS417_07250 - 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data), at 1,598,982 to 1,599,914 _07250 PS417_07255: PS417_07255 - Deoxyribonolactonase (from data), at 1,599,980 to 1,600,858 _07255 PS417_07260: PS417_07260 - 2-deoxy-D-ribonate transporter 2 (from data), at 1,600,932 to 1,602,254 _07260 PS417_07265: PS417_07265 - 2-deoxy-D-ribonate transporter 1 (from data), at 1,602,310 to 1,603,626 _07265 PS417_07270: PS417_07270 - LysR family transcriptional regulator, at 1,603,684 to 1,604,607 _07270 PS417_07275: PS417_07275 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 1,604,656 to 1,605,018 _07275 PS417_07280: PS417_07280 - LysR family transcriptional regulator, at 1,605,032 to 1,605,967 _07280 PS417_07285: PS417_07285 - MFS transporter, at 1,606,105 to 1,607,292 _07285 PS417_07290: PS417_07290 - aldehyde dehydrogenase, at 1,607,506 to 1,608,948 _07290
Locus Name Description Strand Phenotype
PS417_07240 PS417_07240 Transcriptional regulator of deoxyribose catabolism (from data) + strong
PS417_07245 PS417_07245 2-deoxy-D-ribonate 3-dehydrogenase (from data) + strong
PS417_07250 PS417_07250 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) + strong
PS417_07255 PS417_07255 Deoxyribonolactonase (from data) + strong
PS417_07260 PS417_07260 2-deoxy-D-ribonate transporter 2 (from data) + strong
PS417_07265 PS417_07265 2-deoxy-D-ribonate transporter 1 (from data) + strong
PS417_07270 PS417_07270 LysR family transcriptional regulator + strong
PS417_07275 PS417_07275 5-carboxymethyl-2-hydroxymuconate isomerase + insig.
PS417_07280 PS417_07280 LysR family transcriptional regulator - insig.
PS417_07285 PS417_07285 MFS transporter - insig.
PS417_07290 PS417_07290 aldehyde dehydrogenase - insig.

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