Gene info for PS417_07240 in Pseudomonas simiae WCS417

Updated annotation (from data): Transcriptional regulator of deoxyribose catabolism
Rationale: Specifically important in carbon source 2-Deoxy-D-Ribose. Conserved synteny (in an apparent operon) with the SDR and the beta-keto acid cleavage enzyme suggested that it might regulate the operon. Motif analysis found a conserved palindrome GTGATCAC upstream of the operon that matches the motif for AkgR from Rhodobacter sphaeroides (PMCID: GTGATCAC), which is 32% identical to PS417_07240.
Original annotation: GntR family transcriptional regulator
Type 1: Protein-coding gene
Located on scaffold CP007637, + strand, nucleotides 1,597,407 to 1,598,129
See nucleotide sequence around PS417_07240 or for all of scaffold CP007637

Other databases: NCBI, IMG: 2586030104, uniprot: A0A1N7U0Z5

Nearby Genes

500 ntPS417_07210 and PS417_07215 are separated by 11 nucleotidesPS417_07215 and PS417_07220 are separated by 155 nucleotidesPS417_07220 and PS417_07225 overlap by 9 nucleotidesPS417_07225 and PS417_07230 overlap by 4 nucleotidesPS417_07230 and PS417_07240 are separated by 549 nucleotidesPS417_07240 and PS417_07245 overlap by 4 nucleotidesPS417_07245 and PS417_07250 are separated by 67 nucleotidesPS417_07250 and PS417_07255 are separated by 65 nucleotidesPS417_07255 and PS417_07260 are separated by 73 nucleotidesPS417_07260 and PS417_07265 are separated by 55 nucleotides PS417_07210: PS417_07210 - allantoate amidohydrolase, at 1,591,476 to 1,592,705 _07210 PS417_07215: PS417_07215 - acetylpolyamine aminohydrolase, at 1,592,717 to 1,593,745 _07215 PS417_07220: PS417_07220 - LysR family transcriptional regulator, at 1,593,901 to 1,594,803 _07220 PS417_07225: PS417_07225 - molybdenum ABC transporter substrate-binding protein, at 1,594,795 to 1,595,553 _07225 PS417_07230: PS417_07230 - citrate-proton symporter, at 1,595,550 to 1,596,857 _07230 PS417_07240: PS417_07240 - Transcriptional regulator of deoxyribose catabolism (from data), at 1,597,407 to 1,598,129 _07240 PS417_07245: PS417_07245 - 2-deoxy-D-ribonate 3-dehydrogenase (from data), at 1,598,126 to 1,598,914 _07245 PS417_07250: PS417_07250 - 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data), at 1,598,982 to 1,599,914 _07250 PS417_07255: PS417_07255 - Deoxyribonolactonase (from data), at 1,599,980 to 1,600,858 _07255 PS417_07260: PS417_07260 - 2-deoxy-D-ribonate transporter 2 (from data), at 1,600,932 to 1,602,254 _07260 PS417_07265: PS417_07265 - 2-deoxy-D-ribonate transporter 1 (from data), at 1,602,310 to 1,603,626 _07265
Locus Name Description Strand Phenotype
PS417_07210 PS417_07210 allantoate amidohydrolase + insig.
PS417_07215 PS417_07215 acetylpolyamine aminohydrolase + insig.
PS417_07220 PS417_07220 LysR family transcriptional regulator + insig.
PS417_07225 PS417_07225 molybdenum ABC transporter substrate-binding protein - insig.
PS417_07230 PS417_07230 citrate-proton symporter - insig.
PS417_07240 PS417_07240 Transcriptional regulator of deoxyribose catabolism (from data) + strong
PS417_07245 PS417_07245 2-deoxy-D-ribonate 3-dehydrogenase (from data) + strong
PS417_07250 PS417_07250 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) + strong
PS417_07255 PS417_07255 Deoxyribonolactonase (from data) + strong
PS417_07260 PS417_07260 2-deoxy-D-ribonate transporter 2 (from data) + strong
PS417_07265 PS417_07265 2-deoxy-D-ribonate transporter 1 (from data) + strong

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