Gene info for GFF121 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70)
Type 1: Protein-coding gene
Located on scaffold scaffold4.1, + strand, nucleotides 135,355 to 136,344
See nucleotide sequence around GFF121 or for all of scaffold scaffold4.1

Nearby Genes

500 ntGFF116 and GFF117 are separated by 4 nucleotidesGFF117 and GFF118 overlap by 4 nucleotidesGFF118 and GFF119 overlap by 1 nucleotidesGFF119 and GFF120 are separated by 102 nucleotidesGFF120 and GFF121 are separated by 591 nucleotidesGFF121 and GFF122 are separated by 66 nucleotidesGFF122 and GFF123 are separated by 67 nucleotidesGFF123 and GFF124 are separated by 7 nucleotidesGFF124 and GFF125 are separated by 26 nucleotidesGFF125 and GFF126 are separated by 101 nucleotides GFF116 - Porphobilinogen deaminase (EC 2.5.1.61), at 127,265 to 128,221 GFF116 GFF117 - Uroporphyrinogen-III synthase (EC 4.2.1.75), at 128,226 to 129,086 GFF117 GFF118 - Homolog of E. coli HemX protein, at 129,083 to 130,261 GFF118 GFF119 - Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 130,261 to 131,565 GFF119 GFF120 - Ribonuclease E (EC 3.1.26.12), at 131,668 to 134,763 GFF120 GFF121 - Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70), at 135,355 to 136,344 GFF121 GFF122 - HNS-like transcription regulator protein, at 136,411 to 136,716 GFF122 GFF123 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 136,784 to 137,260 GFF123 GFF124 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 137,268 to 138,245 GFF124 GFF125 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 138,272 to 139,966 GFF125 GFF126 - Hydratase/decarboxylase, at 140,068 to 140,868 GFF126
Locus Name Description Strand Phenotype
GFF116 Porphobilinogen deaminase (EC 2.5.1.61) + no data
GFF117 Uroporphyrinogen-III synthase (EC 4.2.1.75) + no data
GFF118 Homolog of E. coli HemX protein + no data
GFF119 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) + cofit
GFF120 Ribonuclease E (EC 3.1.26.12) - cofit
GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) + cofit
GFF122 HNS-like transcription regulator protein + strong
GFF123 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) + cofit
GFF124 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) - strong
GFF125 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) - insig.
GFF126 Hydratase/decarboxylase - no data

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