Gene info for GFF116 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Porphobilinogen deaminase (EC 2.5.1.61)
Type 1: Protein-coding gene
Located on scaffold scaffold4.1, + strand, nucleotides 127,265 to 128,221
See nucleotide sequence around GFF116 or for all of scaffold scaffold4.1

Nearby Genes

500 ntGFF111 and GFF112 are separated by 8 nucleotidesGFF112 and GFF113 are separated by 1 nucleotidesGFF113 and GFF114 overlap by 1 nucleotidesGFF114 and GFF115 are separated by 46 nucleotidesGFF115 and GFF116 are separated by 137 nucleotidesGFF116 and GFF117 are separated by 4 nucleotidesGFF117 and GFF118 overlap by 4 nucleotidesGFF118 and GFF119 overlap by 1 nucleotidesGFF119 and GFF120 are separated by 102 nucleotidesGFF120 and GFF121 are separated by 591 nucleotides GFF111 - ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD, at 119,124 to 121,628 GFF111 GFF112 - Ku domain protein, at 121,637 to 122,470 GFF112 GFF113 - Membrane protein, putative, at 122,472 to 123,383 GFF113 GFF114 - COG0613, Predicted metal-dependent phosphoesterases (PHP family), at 123,383 to 124,240 GFF114 GFF115 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 124,287 to 127,127 GFF115 GFF116 - Porphobilinogen deaminase (EC 2.5.1.61), at 127,265 to 128,221 GFF116 GFF117 - Uroporphyrinogen-III synthase (EC 4.2.1.75), at 128,226 to 129,086 GFF117 GFF118 - Homolog of E. coli HemX protein, at 129,083 to 130,261 GFF118 GFF119 - Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives), at 130,261 to 131,565 GFF119 GFF120 - Ribonuclease E (EC 3.1.26.12), at 131,668 to 134,763 GFF120 GFF121 - Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70), at 135,355 to 136,344 GFF121
Locus Name Description Strand Phenotype
GFF111 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD + insig.
GFF112 Ku domain protein + insig.
GFF113 Membrane protein, putative - insig.
GFF114 COG0613, Predicted metal-dependent phosphoesterases (PHP family) - cofit
GFF115 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) - strong
GFF116 Porphobilinogen deaminase (EC 2.5.1.61) + no data
GFF117 Uroporphyrinogen-III synthase (EC 4.2.1.75) + no data
GFF118 Homolog of E. coli HemX protein + no data
GFF119 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) + cofit
GFF120 Ribonuclease E (EC 3.1.26.12) - cofit
GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) + cofit

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