Gene info for GFF1116 in Variovorax sp. SCN45

Annotation: Membrane-bound lytic murein transglycosylase D
Type 1: Protein-coding gene
Located on scaffold scaffold00000002, - strand, nucleotides 432,998 to 434,590
See nucleotide sequence around GFF1116 or for all of scaffold scaffold00000002

Nearby Genes

500 ntGFF1111 and GFF1112 are separated by 137 nucleotidesGFF1112 and GFF1113 are separated by 55 nucleotidesGFF1113 and GFF1114 overlap by 1 nucleotidesGFF1114 and GFF1115 are separated by 75 nucleotidesGFF1115 and GFF1116 are separated by 17 nucleotidesGFF1116 and GFF1118 overlap by 4 nucleotidesGFF1118 and GFF1117 overlap by 2 nucleotidesGFF1117 and GFF1119 are separated by 2 nucleotidesGFF1119 and GFF1120 are separated by 65 nucleotidesGFF1120 and GFF1121 are separated by 22 nucleotides GFF1111 - probable membrane protein NMA1176, at 428,440 to 428,832 GFF1111 GFF1112 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 428,970 to 430,007 GFF1112 GFF1113 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 430,063 to 430,878 GFF1113 GFF1114 - ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate), at 430,878 to 431,720 GFF1114 GFF1115 - Putative transmembrane protein, at 431,796 to 432,980 GFF1115 GFF1116 - Membrane-bound lytic murein transglycosylase D, at 432,998 to 434,590 GFF1116 GFF1118 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 434,587 to 435,366 GFF1118 GFF1117 - FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-), at 435,365 to 436,135 GFF1117 GFF1119 - Ribonuclease HI (EC 3.1.26.4), at 436,138 to 436,620 GFF1119 GFF1120 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 436,686 to 437,141 GFF1120 GFF1121 - Molybdopterin molybdenumtransferase (EC 2.10.1.1), at 437,164 to 438,474 GFF1121
Locus Name Description Strand Phenotype
GFF1111 probable membrane protein NMA1176 + insig.
GFF1112 Hydroxymethylpyrimidine ABC transporter, substrate-binding component + insig.
GFF1113 ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) + insig.
GFF1114 ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) + insig.
GFF1115 Putative transmembrane protein + insig.
GFF1116 Membrane-bound lytic murein transglycosylase D - insig.
GFF1118 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) - insig.
GFF1117 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) + insig.
GFF1119 Ribonuclease HI (EC 3.1.26.4) + strong
GFF1120 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) + insig.
GFF1121 Molybdopterin molybdenumtransferase (EC 2.10.1.1) - insig.

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