Gene info for Echvi_1879 in Echinicola vietnamensis KMM 6221, DSM 17526

Updated annotation (from data): L-arabinose isomerase (EC 5.3.1.4)
Rationale: Specifically important for utilizing L-Arabinose. Automated validation from mutant phenotype: the predicted function (ARABISOM-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: L-arabinose isomerase
Type 1: Protein-coding gene
Located on scaffold Echvi_Contig97.1, - strand, nucleotides 2,205,746 to 2,207,248
See nucleotide sequence around Echvi_1879 or for all of scaffold Echvi_Contig97.1

Other databases: NCBI, uniprot: L0FW63

Nearby Genes

500 ntEchvi_1874 and Echvi_1875 are separated by 215 nucleotidesEchvi_1875 and Echvi_1876 are separated by 116 nucleotidesEchvi_1876 and Echvi_1877 are separated by 110 nucleotidesEchvi_1877 and Echvi_1878 overlap by 1 nucleotidesEchvi_1878 and Echvi_1879 are separated by 154 nucleotidesEchvi_1879 and Echvi_1880 are separated by 30 nucleotidesEchvi_1880 and Echvi_1881 are separated by 114 nucleotidesEchvi_1881 and Echvi_1882 are separated by 125 nucleotidesEchvi_1882 and Echvi_1883 are separated by 63 nucleotidesEchvi_1883 and Echvi_1884 are separated by 164 nucleotides Echvi_1874: Echvi_1874 - AraC-type DNA-binding domain-containing proteins, at 2,200,271 to 2,201,110 _1874 Echvi_1875: Echvi_1875 - xylulokinase (EC 2.7.1.17) (from data), at 2,201,326 to 2,202,816 _1875 Echvi_1876: Echvi_1876 - Xylose isomerase (EC 5.3.1.5) (from data), at 2,202,933 to 2,204,246 _1876 Echvi_1877: Echvi_1877 - hypothetical protein, at 2,204,357 to 2,204,467 _1877 Echvi_1878: Echvi_1878 - Beta-xylosidase, at 2,204,467 to 2,205,591 _1878 Echvi_1879: Echvi_1879 - L-arabinose isomerase (EC 5.3.1.4) (from data), at 2,205,746 to 2,207,248 _1879 Echvi_1880: Echvi_1880 - L-arabinose symporter (from data), at 2,207,279 to 2,209,153 _1880 Echvi_1881: Echvi_1881 - ADP-ribose pyrophosphatase, at 2,209,268 to 2,209,981 _1881 Echvi_1882: Echvi_1882 - Lactoylglutathione lyase and related lyases, at 2,210,107 to 2,210,547 _1882 Echvi_1883: Echvi_1883 - C-terminal peptidase (prc), at 2,210,611 to 2,212,290 _1883 Echvi_1884: Echvi_1884 - Regulator of cell morphogenesis and NO signaling, at 2,212,455 to 2,213,213 _1884
Locus Name Description Strand Phenotype
Echvi_1874 Echvi_1874 AraC-type DNA-binding domain-containing proteins - cofit
Echvi_1875 Echvi_1875 xylulokinase (EC 2.7.1.17) (from data) + strong
Echvi_1876 Echvi_1876 Xylose isomerase (EC 5.3.1.5) (from data) + strong
Echvi_1877 Echvi_1877 hypothetical protein - no data
Echvi_1878 Echvi_1878 Beta-xylosidase - insig.
Echvi_1879 Echvi_1879 L-arabinose isomerase (EC 5.3.1.4) (from data) - strong
Echvi_1880 Echvi_1880 L-arabinose symporter (from data) - sig.
Echvi_1881 Echvi_1881 ADP-ribose pyrophosphatase - strong
Echvi_1882 Echvi_1882 Lactoylglutathione lyase and related lyases - sig.
Echvi_1883 Echvi_1883 C-terminal peptidase (prc) - strong
Echvi_1884 Echvi_1884 Regulator of cell morphogenesis and NO signaling + sig.

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