Gene info for Echvi_1876 in Echinicola vietnamensis KMM 6221, DSM 17526

Updated annotation (from data): Xylose isomerase (EC 5.3.1.5)
Rationale: Specifically important for utilizing D-Xylose. Automated validation from mutant phenotype: the predicted function (XYLISOM-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: xylose isomerase
Type 1: Protein-coding gene
Located on scaffold Echvi_Contig97.1, + strand, nucleotides 2,202,933 to 2,204,246
See nucleotide sequence around Echvi_1876 or for all of scaffold Echvi_Contig97.1

Other databases: NCBI, uniprot: L0FZF6

Nearby Genes

500 ntEchvi_1871 and Echvi_1872 are separated by 469 nucleotidesEchvi_1872 and Echvi_1873 overlap by 4 nucleotidesEchvi_1873 and Echvi_1874 are separated by 2 nucleotidesEchvi_1874 and Echvi_1875 are separated by 215 nucleotidesEchvi_1875 and Echvi_1876 are separated by 116 nucleotidesEchvi_1876 and Echvi_1877 are separated by 110 nucleotidesEchvi_1877 and Echvi_1878 overlap by 1 nucleotidesEchvi_1878 and Echvi_1879 are separated by 154 nucleotidesEchvi_1879 and Echvi_1880 are separated by 30 nucleotidesEchvi_1880 and Echvi_1881 are separated by 114 nucleotides Echvi_1871: Echvi_1871 - transporter for D-glucose/D-galactose/D-xylose/methyl-beta-D-galactopyranoside (from data), at 2,197,212 to 2,198,855 _1871 Echvi_1872: Echvi_1872 - hypothetical protein, at 2,199,325 to 2,199,807 _1872 Echvi_1873: Echvi_1873 - hypothetical protein, at 2,199,804 to 2,200,268 _1873 Echvi_1874: Echvi_1874 - AraC-type DNA-binding domain-containing proteins, at 2,200,271 to 2,201,110 _1874 Echvi_1875: Echvi_1875 - xylulokinase (EC 2.7.1.17) (from data), at 2,201,326 to 2,202,816 _1875 Echvi_1876: Echvi_1876 - Xylose isomerase (EC 5.3.1.5) (from data), at 2,202,933 to 2,204,246 _1876 Echvi_1877: Echvi_1877 - hypothetical protein, at 2,204,357 to 2,204,467 _1877 Echvi_1878: Echvi_1878 - Beta-xylosidase, at 2,204,467 to 2,205,591 _1878 Echvi_1879: Echvi_1879 - L-arabinose isomerase (EC 5.3.1.4) (from data), at 2,205,746 to 2,207,248 _1879 Echvi_1880: Echvi_1880 - L-arabinose symporter (from data), at 2,207,279 to 2,209,153 _1880 Echvi_1881: Echvi_1881 - ADP-ribose pyrophosphatase, at 2,209,268 to 2,209,981 _1881
Locus Name Description Strand Phenotype
Echvi_1871 Echvi_1871 transporter for D-glucose/D-galactose/D-xylose/methyl-beta-D-galactopyranoside (from data) + strong
Echvi_1872 Echvi_1872 hypothetical protein + insig.
Echvi_1873 Echvi_1873 hypothetical protein + insig.
Echvi_1874 Echvi_1874 AraC-type DNA-binding domain-containing proteins - cofit
Echvi_1875 Echvi_1875 xylulokinase (EC 2.7.1.17) (from data) + strong
Echvi_1876 Echvi_1876 Xylose isomerase (EC 5.3.1.5) (from data) + strong
Echvi_1877 Echvi_1877 hypothetical protein - no data
Echvi_1878 Echvi_1878 Beta-xylosidase - insig.
Echvi_1879 Echvi_1879 L-arabinose isomerase (EC 5.3.1.4) (from data) - strong
Echvi_1880 Echvi_1880 L-arabinose symporter (from data) - sig.
Echvi_1881 Echvi_1881 ADP-ribose pyrophosphatase - strong

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