Gene info for BNILDI_00440 in Escherichia coli ECRC62

Name: hcp1,tssD1
Annotation: type VI secretion system protein, Hcp family
Type 1: Protein-coding gene
Located on scaffold contig_1, + strand, nucleotides 88,254 to 88,736
See nucleotide sequence around BNILDI_00440 or for all of scaffold contig_1

Other databases: NCBI

Nearby Genes

500 ntBNILDI_00415 and tssC are separated by 50 nucleotidestssC and tssF are separated by 6 nucleotidestssF and BNILDI_00430 are separated by 3 nucleotidesBNILDI_00430 and BNILDI_00435 are separated by 34 nucleotidesBNILDI_00435 and hcp1,tssD1 are separated by 23 nucleotideshcp1,tssD1 and BNILDI_00445 are separated by 43 nucleotidesBNILDI_00445 and BNILDI_00450 overlap by 32 nucleotidesBNILDI_00450 and BNILDI_00460 are separated by 293 nucleotidesBNILDI_00460 and BNILDI_00465 overlap by 53 nucleotidesBNILDI_00465 and BNILDI_00470 are separated by 220 nucleotides BNILDI_00415: BNILDI_00415 - hypothetical protein, at 85,036 to 85,260 _00415 BNILDI_00420: tssC - type VI secretion system contractile sheath large subunit, at 85,311 to 86,786 tssC BNILDI_00425: tssF - type VI secretion system baseplate subunit TssF, at 86,793 to 87,206 tssF BNILDI_00430: BNILDI_00430 - Type VI secretion protein, family, at 87,210 to 87,887 _00430 BNILDI_00435: BNILDI_00435 - ImpA domain protein, at 87,922 to 88,230 _00435 BNILDI_00440: hcp1,tssD1 - type VI secretion system protein, Hcp family, at 88,254 to 88,736 hcp1,tssD1 BNILDI_00445: BNILDI_00445 - Inner membrane protein yafU, at 88,780 to 89,505 _00445 BNILDI_00450: BNILDI_00450 - IS4-like element ISVsa5 family transposase, at 89,474 to 90,682 _00450 BNILDI_00460: BNILDI_00460 - hypothetical protein, at 90,976 to 91,131 _00460 BNILDI_00465: BNILDI_00465 - DNA-binding protein, at 91,079 to 91,519 _00465 BNILDI_00470: BNILDI_00470 - IS2 repressor TnpA, at 91,740 to 91,919 _00470
Locus Name Description Strand Phenotype
BNILDI_00415 BNILDI_00415 hypothetical protein + insig.
BNILDI_00420 tssC type VI secretion system contractile sheath large subunit + cofit
BNILDI_00425 tssF type VI secretion system baseplate subunit TssF + cofit
BNILDI_00430 BNILDI_00430 Type VI secretion protein, family + cofit
BNILDI_00435 BNILDI_00435 ImpA domain protein + insig.
BNILDI_00440 hcp1,tssD1 type VI secretion system protein, Hcp family + no data
BNILDI_00445 BNILDI_00445 Inner membrane protein yafU + insig.
BNILDI_00450 BNILDI_00450 IS4-like element ISVsa5 family transposase - no data
BNILDI_00460 BNILDI_00460 hypothetical protein - insig.
BNILDI_00465 BNILDI_00465 DNA-binding protein - insig.
BNILDI_00470 BNILDI_00470 IS2 repressor TnpA + insig.

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