Gene info for ABID97_RS12930 in Variovorax sp. OAS795

Annotation: Hcp family type VI secretion system effector
Type 1: Protein-coding gene
Located on scaffold NZ_JBEPOH010000001, + strand, nucleotides 2,680,338 to 2,680,826
See nucleotide sequence around ABID97_RS12930 or for all of scaffold NZ_JBEPOH010000001

Other databases: NCBI

Nearby Genes

500 ntABID97_RS12905 and ABID97_RS12910 overlap by 4 nucleotidesABID97_RS12910 and ABID97_RS12915 are separated by 123 nucleotidesABID97_RS12915 and ABID97_RS12920 are separated by 19 nucleotidesABID97_RS12920 and ABID97_RS12925 are separated by 18 nucleotidesABID97_RS12925 and ABID97_RS12930 are separated by 219 nucleotidesABID97_RS12930 and ABID97_RS12935 are separated by 38 nucleotidesABID97_RS12935 and ABID97_RS12940 are separated by 37 nucleotidesABID97_RS12940 and ABID97_RS12945 overlap by 13 nucleotidesABID97_RS12945 and ABID97_RS12950 overlap by 14 nucleotidesABID97_RS12950 and ABID97_RS12955 are separated by 17 nucleotides ABID97_RS12905: ABID97_RS12905 - response regulator transcription factor, at 2,675,334 to 2,676,068 _RS12905 ABID97_RS12910: ABID97_RS12910 - ATP-binding protein, at 2,676,065 to 2,677,834 _RS12910 ABID97_RS12915: ABID97_RS12915 - hypothetical protein, at 2,677,958 to 2,678,098 _RS12915 ABID97_RS12920: ABID97_RS12920 - type VI secretion system contractile sheath small subunit, at 2,678,118 to 2,678,612 _RS12920 ABID97_RS12925: ABID97_RS12925 - type VI secretion system contractile sheath large subunit, at 2,678,631 to 2,680,118 _RS12925 ABID97_RS12930: ABID97_RS12930 - Hcp family type VI secretion system effector, at 2,680,338 to 2,680,826 _RS12930 ABID97_RS12935: ABID97_RS12935 - type VI secretion system baseplate subunit TssE, at 2,680,865 to 2,681,281 _RS12935 ABID97_RS12940: ABID97_RS12940 - type VI secretion system baseplate subunit TssF, at 2,681,319 to 2,683,082 _RS12940 ABID97_RS12945: ABID97_RS12945 - type VI secretion system baseplate subunit TssG, at 2,683,070 to 2,684,095 _RS12945 ABID97_RS12950: ABID97_RS12950 - type VI secretion system ATPase TssH, at 2,684,082 to 2,686,742 _RS12950 ABID97_RS12955: ABID97_RS12955 - type VI secretion system tip protein TssI/VgrG, at 2,686,760 to 2,689,810 _RS12955
Locus Name Description Strand Phenotype
ABID97_RS12905 ABID97_RS12905 response regulator transcription factor - insig.
ABID97_RS12910 ABID97_RS12910 ATP-binding protein - insig.
ABID97_RS12915 ABID97_RS12915 hypothetical protein - no data
ABID97_RS12920 ABID97_RS12920 type VI secretion system contractile sheath small subunit + no data
ABID97_RS12925 ABID97_RS12925 type VI secretion system contractile sheath large subunit + insig.
ABID97_RS12930 ABID97_RS12930 Hcp family type VI secretion system effector + insig.
ABID97_RS12935 ABID97_RS12935 type VI secretion system baseplate subunit TssE + no data
ABID97_RS12940 ABID97_RS12940 type VI secretion system baseplate subunit TssF + insig.
ABID97_RS12945 ABID97_RS12945 type VI secretion system baseplate subunit TssG + insig.
ABID97_RS12950 ABID97_RS12950 type VI secretion system ATPase TssH + insig.
ABID97_RS12955 ABID97_RS12955 type VI secretion system tip protein TssI/VgrG + insig.

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