Gene info for b3283 in Escherichia coli BW25113

Name: yrdD
Annotation: predicted DNA topoisomerase (NCBI)
Type 1: Protein-coding gene
Located on scaffold 7023, - strand, nucleotides 3,429,442 to 3,429,984
See nucleotide sequence around b3283 or for all of scaffold 7023

Other databases: MicrobesOnline, EcoCyc, NCBI, IMG: 646315249, uniprot: P45771

Nearby Genes

500 ntrrsD and yrdA are separated by 473 nucleotidesyrdA and yrdB overlap by 25 nucleotidesyrdB and aroE overlap by 4 nucleotidesaroE and yrdC are separated by 4 nucleotidesyrdC and yrdD are separated by 4 nucleotidesyrdD and smg are separated by 28 nucleotidessmg and smf overlap by 29 nucleotidessmf and def are separated by 129 nucleotidesdef and fmt are separated by 14 nucleotidesfmt and rsmB are separated by 45 nucleotides b3278: rrsD - 16S ribosomal RNA (NCBI), at 3,425,243 to 3,426,784 rrsD b3279: yrdA - putative transferase (VIMSS), at 3,427,258 to 3,427,812 yrdA b3280: yrdB - hypothetical protein (NCBI), at 3,427,788 to 3,428,045 yrdB b3281: aroE - dehydroshikimate reductase, NAD(P)-binding (NCBI), at 3,428,042 to 3,428,860 aroE b3282: yrdC - predicted ribosome maturation factor (NCBI), at 3,428,865 to 3,429,437 yrdC b3283: yrdD - predicted DNA topoisomerase (NCBI), at 3,429,442 to 3,429,984 yrdD b3284: smg - hypothetical protein (NCBI), at 3,430,013 to 3,430,486 smg b4473: smf - hypothetical protein (NCBI), at 3,430,458 to 3,431,582 smf b3287: def - peptide deformylase (NCBI), at 3,431,712 to 3,432,221 def b3288: fmt - methionyl-tRNA formyltransferase (NCBI), at 3,432,236 to 3,433,183 fmt b3289: rsmB - 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI), at 3,433,229 to 3,434,518 rsmB
Locus Name Description Strand Phenotype
b3278 rrsD 16S ribosomal RNA (NCBI) - no data
b3279 yrdA putative transferase (VIMSS) + sig.
b3280 yrdB hypothetical protein (NCBI) - sig.
b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) - strong
b3282 yrdC predicted ribosome maturation factor (NCBI) - no data
b3283 yrdD predicted DNA topoisomerase (NCBI) - sig.
b3284 smg hypothetical protein (NCBI) - sig.
b4473 smf hypothetical protein (NCBI) - insig.
b3287 def peptide deformylase (NCBI) + no data
b3288 fmt methionyl-tRNA formyltransferase (NCBI) + no data
b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) + strong

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