Gene info for b4068 in Escherichia coli BW25113

Name: yjcH
Updated annotation (from data): required for glycolate transport, with actP
Rationale: PFam PF04341.8 (DUF485). This gene is specifically important for glycolate utilization and is conserved cofit with actP.
Original annotation: conserved inner membrane protein involved in acetate transport (NCBI)
Type 1: Protein-coding gene
Located on scaffold 7023, - strand, nucleotides 4,282,922 to 4,283,236
See nucleotide sequence around b4068 or for all of scaffold 7023

Other databases: MicrobesOnline, EcoCyc, NCBI, IMG: 646316054, uniprot: P0AF54

Nearby Genes

500 ntryjA and yjcD are separated by 412 nucleotidesyjcD and yjcE are separated by 151 nucleotidesyjcE and yjcF are separated by 153 nucleotidesyjcF and actP are separated by 177 nucleotidesactP and yjcH overlap by 4 nucleotidesyjcH and acs are separated by 199 nucleotidesacs and nrfA are separated by 392 nucleotidesnrfA and nrfB are separated by 44 nucleotidesnrfB and nrfC overlap by 4 nucleotidesnrfC and nrfD overlap by 4 nucleotides b4459: ryjA - unknown RNA (NCBI), at 4,275,950 to 4,276,089 ryjA b4064: yjcD - predicted permease (NCBI), at 4,276,502 to 4,277,851 yjcD b4065: yjcE - predicted cation/proton antiporter (NCBI), at 4,278,003 to 4,279,652 yjcE b4066: yjcF - hypothetical protein (NCBI), at 4,279,806 to 4,281,098 yjcF b4067: actP - acetate permease (NCBI), at 4,281,276 to 4,282,925 actP b4068: yjcH - required for glycolate transport, with actP (from data), at 4,282,922 to 4,283,236 yjcH b4069: acs - acetyl-coenzyme A synthetase (NCBI), at 4,283,436 to 4,285,394 acs b4070: nrfA - nitrite reductase, formate-dependent, cytochrome (NCBI), at 4,285,787 to 4,287,223 nrfA b4071: nrfB - formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS), at 4,287,268 to 4,287,834 nrfB b4072: nrfC - formate-dependent nitrite reductase, 4Fe4S subunit (NCBI), at 4,287,831 to 4,288,502 nrfC b4073: nrfD - formate-dependent nitrite reductase, membrane subunit (NCBI), at 4,288,499 to 4,289,455 nrfD
Locus Name Description Strand Phenotype
b4459 ryjA unknown RNA (NCBI) - no data
b4064 yjcD predicted permease (NCBI) + insig.
b4065 yjcE predicted cation/proton antiporter (NCBI) + sig.
b4066 yjcF hypothetical protein (NCBI) - insig.
b4067 actP acetate permease (NCBI) - sig.
b4068 yjcH required for glycolate transport, with actP (from data) - sig.
b4069 acs acetyl-coenzyme A synthetase (NCBI) - strong
b4070 nrfA nitrite reductase, formate-dependent, cytochrome (NCBI) + insig.
b4071 nrfB formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) + cofit
b4072 nrfC formate-dependent nitrite reductase, 4Fe4S subunit (NCBI) + insig.
b4073 nrfD formate-dependent nitrite reductase, membrane subunit (NCBI) + insig.

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