Gene info for b3809 in Escherichia coli BW25113

Name: dapF
Annotation: diaminopimelate epimerase (VIMSS)
Type 1: Protein-coding gene
Located on scaffold 7023, + strand, nucleotides 3,992,785 to 3,993,609
See nucleotide sequence around b3809 or for all of scaffold 7023

Other databases: MicrobesOnline, EcoCyc, NCBI, IMG: 646315793, uniprot: P0A6K1

Nearby Genes

500 nthemD and hemC overlap by 4 nucleotideshemC and cyaA are separated by 386 nucleotidescyaA and cyaY are separated by 39 nucleotidescyaY and yifL are separated by 462 nucleotidesyifL and dapF are separated by 36 nucleotidesdapF and yigA overlap by 4 nucleotidesyigA and xerC overlap by 4 nucleotidesxerC and yigB overlap by 1 nucleotidesyigB and uvrD are separated by 83 nucleotidesuvrD and yigE are separated by 146 nucleotides b3804: hemD - uroporphyrinogen-III synthetase (NCBI), at 3,987,111 to 3,987,851 hemD b3805: hemC - porphobilinogen deaminase (NCBI), at 3,987,848 to 3,988,789 hemC b3806: cyaA - adenylate cyclase (NCBI), at 3,989,176 to 3,991,722 cyaA b3807: cyaY - frataxin-like protein (NCBI), at 3,991,762 to 3,992,082 cyaY b4558: yifL - predicted lipoprotein (NCBI), at 3,992,545 to 3,992,748 yifL b3809: dapF - diaminopimelate epimerase (VIMSS), at 3,992,785 to 3,993,609 dapF b3810: yigA - hypothetical protein (NCBI), at 3,993,606 to 3,994,313 yigA b3811: xerC - site-specific tyrosine recombinase XerC (NCBI), at 3,994,310 to 3,995,206 xerC b3812: yigB - predicted hydrolase (NCBI), at 3,995,206 to 3,995,922 yigB b3813: uvrD - DNA-dependent ATPase I and helicase II (NCBI), at 3,996,006 to 3,998,168 uvrD b4482: yigE - hypothetical protein (NCBI), at 3,998,315 to 3,999,079 yigE
Locus Name Description Strand Phenotype
b3804 hemD uroporphyrinogen-III synthetase (NCBI) - no data
b3805 hemC porphobilinogen deaminase (NCBI) - no data
b3806 cyaA adenylate cyclase (NCBI) + strong
b3807 cyaY frataxin-like protein (NCBI) - strong
b4558 yifL predicted lipoprotein (NCBI) + strong
b3809 dapF diaminopimelate epimerase (VIMSS) + no data
b3810 yigA hypothetical protein (NCBI) + strong
b3811 xerC site-specific tyrosine recombinase XerC (NCBI) + strong
b3812 yigB predicted hydrolase (NCBI) + strong
b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) + strong
b4482 yigE hypothetical protein (NCBI) - insig.

Or browse nearby genes

Or see the comparative fitness browser