Gene info for b3748 in Escherichia coli BW25113

Name: rbsD
Updated annotation (from data): D-ribose pyranase [EC:5.4.99.62]
Rationale: This is a ribose pyranase, not a transporter, see PMID:15060078 or UniProt:RBSD_ECOLI (KEGG_correct)
Original annotation: D-ribose high-affinity transport system; membrane-associated protein (VIMSS)
Type 1: Protein-coding gene
Located on scaffold 7023, + strand, nucleotides 3,931,374 to 3,931,793
See nucleotide sequence around b3748 or for all of scaffold 7023

Other databases: MicrobesOnline, EcoCyc, NCBI, IMG: 646315733, uniprot: P04982

Nearby Genes

500 ntasnC and asnA are separated by 151 nucleotidesasnA and yieM are separated by 4 nucleotidesyieM and yieN overlap by 7 nucleotidesyieN and trkD are separated by 222 nucleotidestrkD and rbsD are separated by 166 nucleotidesrbsD and rbsA are separated by 7 nucleotidesrbsA and rbsC are separated by 4 nucleotidesrbsC and rbsB are separated by 24 nucleotidesrbsB and rbsK are separated by 125 nucleotidesrbsK and rbsR are separated by 3 nucleotides b3743: asnC - DNA-binding transcriptional dual regulator (NCBI), at 3,924,568 to 3,925,026 asnC b3744: asnA - asparagine synthetase AsnA (NCBI), at 3,925,178 to 3,926,170 asnA b3745: yieM - predicted von Willibrand factor containing protein (NCBI), at 3,926,175 to 3,927,626 yieM b3746: yieN - putative 2-component regulator (VIMSS), at 3,927,620 to 3,929,116 yieN b3747: trkD - potassium transporter (NCBI), at 3,929,339 to 3,931,207 trkD b3748: rbsD - D-ribose pyranase [EC:5.4.99.62] (from data), at 3,931,374 to 3,931,793 rbsD b3749: rbsA - fused D-ribose transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 3,931,801 to 3,933,306 rbsA b3750: rbsC - ribose ABC transporter permease protein (NCBI), at 3,933,311 to 3,934,276 rbsC b3751: rbsB - D-ribose transporter subunit (NCBI), at 3,934,301 to 3,935,191 rbsB b3752: rbsK - ribokinase (NCBI), at 3,935,317 to 3,936,246 rbsK b3753: rbsR - DNA-binding transcriptional repressor of ribose metabolism (NCBI), at 3,936,250 to 3,937,242 rbsR
Locus Name Description Strand Phenotype
b3743 asnC DNA-binding transcriptional dual regulator (NCBI) - sig.
b3744 asnA asparagine synthetase AsnA (NCBI) + sig.
b3745 yieM predicted von Willibrand factor containing protein (NCBI) - cofit
b3746 yieN putative 2-component regulator (VIMSS) - cofit
b3747 trkD potassium transporter (NCBI) + insig.
b3748 rbsD D-ribose pyranase [EC:5.4.99.62] (from data) + strong
b3749 rbsA fused D-ribose transporter subunits of ABC superfamily: ATP-binding components (NCBI) + cofit
b3750 rbsC ribose ABC transporter permease protein (NCBI) + sig.
b3751 rbsB D-ribose transporter subunit (NCBI) + strong
b3752 rbsK ribokinase (NCBI) + strong
b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) + strong

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