Gene info for b0539 in Escherichia coli BW25113

Name: ybcC
Annotation: DLP12 prophage; predicted exonuclease (RefSeq)
Type 7: Pseudogene derived from a protein-coding gene
Located on scaffold 7023, - strand, nucleotides 565,321 to 565,599
See nucleotide sequence around b0539 or for all of scaffold 7023

Other databases: MicrobesOnline, EcoCyc

Nearby Genes

500 ntsfmF and fimZ are separated by 2 nucleotidesfimZ and argU are separated by 242 nucleotidesargU and intD are separated by 15 nucleotidesintD and xisD overlap by 121 nucleotidesxisD and ybcC are separated by 18 nucleotidesybcC and peaD overlap by 1 nucleotidespeaD and renD overlap by 4 nucleotidesrenD and insE are separated by 65 nucleotidesinsE and insF-3 overlap by 4 nucleotidesinsF-3 and emrE are separated by 310 nucleotides b0534: sfmF - predicted fimbrial-like adhesin protein (NCBI), at 562,553 to 563,068 sfmF b0535: fimZ - predicted DNA-binding transcriptional regulator (NCBI), at 563,071 to 563,703 fimZ b0536: argU - tRNA-Arg (NCBI), at 563,946 to 564,022 argU b0537: intD - DLP12 prophage; predicted integrase (NCBI), at 564,038 to 565,201 intD b4633: xisD - no description, at 565,081 to 565,302 xisD b0539: ybcC - DLP12 prophage; predicted exonuclease (RefSeq), at 565,321 to 565,599 ybcC b4508: peaD - putative sensory transduction regulator (VIMSS), at 565,599 to 565,910 peaD b0542: renD - orf, hypothetical protein (VIMSS), at 565,907 to 565,999 renD b0540: insE - IS3 element protein InsE (RefSeq), at 566,065 to 566,364 insE b0541: insF-3 - DLP12 prophage; IS3 element protein InsF (NCBI), at 566,361 to 567,227 insF-3 b0543: emrE - multidrug efflux protein (NCBI), at 567,538 to 567,870 emrE
Locus Name Description Strand Phenotype
b0534 sfmF predicted fimbrial-like adhesin protein (NCBI) + insig.
b0535 fimZ predicted DNA-binding transcriptional regulator (NCBI) - sig.
b0536 argU tRNA-Arg (NCBI) + no data
b0537 intD DLP12 prophage; predicted integrase (NCBI) - sig.
b4633 xisD no description - sig.
b0539 ybcC DLP12 prophage; predicted exonuclease (RefSeq) - insig.
b4508 peaD putative sensory transduction regulator (VIMSS) + sig.
b0542 renD orf, hypothetical protein (VIMSS) + insig.
b0540 insE IS3 element protein InsE (RefSeq) + no data
b0541 insF-3 DLP12 prophage; IS3 element protein InsF (NCBI) + no data
b0543 emrE multidrug efflux protein (NCBI) + strong

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