Betaproteobacteria: Variovorax sp. OAS795
NCBI taxonomy id: 34072
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 47 | 92 |
| control | 1 | 1 |
| in planta | 1 | 3 |
| nldm_defined | 1 | 2 |
| no phage control | 1 | 3 |
| nutrient | 2 | 4 |
| pH | 1 | 4 |
| phage | 2 | 14 |
| plant outgrowth control | 1 | 2 |
| r2a | 1 | 2 |
| r2a outgrowth control | 1 | 4 |
| stress | 3 | 15 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- BLAST or Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
419 genes with specific phenotypes, and 84 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 44 | 373 |
| control | 1 | 1 |
| in planta | 1 | 25 |
| phage | 2 | 26 |
| r2a outgrowth control | 1 | 1 |
| stress | 2 | 18 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 387 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 4532 of 5899 genes.