Gammaproteobacteria: Escherichia coli ECRC101
NCBI taxonomy id: 562
Fitness Experiments
| Group | Conditions | Experiments |
|---|---|---|
| carbon source | 4 | 8 |
| no phage control | 4 | 16 |
| phage | 5 | 108 |
| toxin | 2 | 5 |
Tools
- Build heatmap
- Experiment correlations
- KEGG maps
- KEGG overview map
- SEED subsystems
- MetaCyc pathways
- BLAST or Curated BLAST for this genome
- GapMind for amino acid biosynthesis or carbon catabolism
- ENIGMA genome browser
Specific Phenotypes
134 genes with specific phenotypes, and 37 with conserved-specific phenotypes.
| Group | # Conditions | # Genes |
|---|---|---|
| carbon source | 4 | 36 |
| no phage control | 1 | 1 |
| phage | 2 | 78 |
| toxin | 2 | 29 |
Scaffolds
Downloads
- Fitness values (tab-delimited)
- t scores (tab-delimited)
- Top cofitness for each gene (tab-delimited)
- includes 398 genes with conserved cofitness
- Specific phenotypes (tab-delimited)
- Experiment meta-data (tab-delimited)
- Reannotations (tab-delimited; includes protein sequences)
- Genome sequence (fasta)
- Protein sequences (fasta)
- List of genes (tab-delimited)
Fitness data for 4363 of 5492 genes.