Experiment setATCH248 for Dickeya dianthicola ME23

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -4.6 -9.3 thymidylate synthase compare
DZA65_RS10055 -3.4 -6.9 histidinol dehydrogenase compare
DZA65_RS10045 -3.3 -8.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS10030 -3.1 -6.3 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS00800 -3.1 -7.3 O-antigen ligase family protein compare
DZA65_RS17390 -3.0 -17.6 inner membrane protein YpjD compare
DZA65_RS21470 -3.0 -17.5 cystathionine gamma-synthase compare
DZA65_RS19215 -2.9 -5.6 3-isopropylmalate dehydratase small subunit compare
DZA65_RS20275 -2.9 -14.1 homoserine O-succinyltransferase compare
DZA65_RS06685 -2.8 -16.9 asparagine synthase B compare
DZA65_RS19480 -2.7 -6.7 homoserine kinase compare
DZA65_RS19540 -2.7 -8.7 phosphoglycerate dehydrogenase compare
DZA65_RS15995 -2.7 -11.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS19655 -2.7 -2.6 adenylosuccinate synthase compare
DZA65_RS00940 -2.7 -9.6 acetylglutamate kinase compare
DZA65_RS13710 -2.7 -13.2 dihydroorotase compare
DZA65_RS01260 -2.6 -13.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS19380 -2.5 -16.5 carbamoyl-phosphate synthase large subunit compare
DZA65_RS19200 -2.5 -17.1 2-isopropylmalate synthase compare
DZA65_RS21310 -2.5 -13.2 ketol-acid reductoisomerase compare
DZA65_RS13390 -2.5 -10.5 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS01970 -2.5 -13.3 aspartate carbamoyltransferase compare
DZA65_RS00735 -2.5 -7.7 orotate phosphoribosyltransferase compare
DZA65_RS19210 -2.5 -11.5 3-isopropylmalate dehydratase large subunit compare
DZA65_RS01635 -2.4 -19.0 glutamate synthase large subunit compare
DZA65_RS21335 -2.4 -12.9 dihydroxy-acid dehydratase compare
DZA65_RS00355 -2.3 -13.1 argininosuccinate synthase compare
DZA65_RS00895 -2.3 -14.6 phosphoenolpyruvate carboxylase compare
DZA65_RS03230 -2.3 -3.8 transcription termination/antitermination protein NusA compare
DZA65_RS19645 -2.3 -14.7 class 1 fructose-bisphosphatase compare
DZA65_RS00945 -2.3 -10.9 argininosuccinate lyase compare
DZA65_RS22210 -2.3 -12.3 nitrogen regulation protein NR(I) compare
DZA65_RS00935 -2.2 -11.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
DZA65_RS06470 -2.2 -6.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS10940 -2.2 -11.2 tryptophan synthase subunit alpha compare
DZA65_RS13030 -2.2 -10.5 orotidine-5'-phosphate decarboxylase compare
DZA65_RS19205 -2.2 -10.9 3-isopropylmalate dehydrogenase compare
DZA65_RS01580 -2.2 -16.0 outer membrane-stress sensor serine endopeptidase DegS compare
DZA65_RS09455 -2.2 -5.5 DUF3413 domain-containing protein compare
DZA65_RS02490 -2.2 -9.1 phosphoserine phosphatase compare
DZA65_RS16930 -2.1 -12.2 RNA polymerase sigma factor RpoE compare
DZA65_RS01255 -2.1 -11.3 phosphoribosylamine--glycine ligase compare
DZA65_RS01630 -2.1 -11.4 FAD-dependent oxidoreductase compare
DZA65_RS18550 -2.1 -9.1 diaminopimelate decarboxylase compare
DZA65_RS10955 -2.1 -7.2 anthranilate phosphoribosyltransferase compare
DZA65_RS10945 -2.1 -11.9 tryptophan synthase subunit beta compare
DZA65_RS17345 -2.1 -10.7 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS10950 -2.1 -9.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS16830 -2.1 -16.4 phosphoribosylformylglycinamidine synthase compare
DZA65_RS19385 -2.0 -9.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS06420 -2.0 -10.6 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS15335 -2.0 -14.1 amidophosphoribosyltransferase compare
DZA65_RS01985 -2.0 -11.5 ornithine carbamoyltransferase compare
DZA65_RS15990 -2.0 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS05340 -2.0 -12.2 amino-acid N-acetyltransferase compare
DZA65_RS10050 -1.9 -5.4 histidinol-phosphate transaminase compare
DZA65_RS10025 -1.9 -6.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS21530 -1.9 -12.5 glycerol kinase GlpK compare
DZA65_RS09990 -1.9 -3.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS10965 -1.9 -11.5 anthranilate synthase component 1 compare
DZA65_RS17160 -1.9 -8.8 pantoate--beta-alanine ligase compare
DZA65_RS17155 -1.8 -7.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DZA65_RS06025 -1.8 -3.2 DNA-binding protein HU-beta compare
DZA65_RS19485 -1.7 -12.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DZA65_RS00930 -1.7 -9.6 acetylornithine deacetylase compare
DZA65_RS01785 -1.7 -10.9 cystathionine beta-lyase compare
DZA65_RS18320 -1.7 -6.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS10825 -1.7 -8.8 two-component system response regulator RssB compare
DZA65_RS20915 -1.7 -12.5 glycogen synthase GlgA compare
DZA65_RS10905 -1.6 -6.5 TonB system transport protein TonB compare
DZA65_RS15585 -1.6 -13.3 TonB-dependent siderophore receptor compare
DZA65_RS17165 -1.6 -9.7 aspartate 1-decarboxylase compare
DZA65_RS06220 -1.6 -10.2 hypothetical protein conserved
DZA65_RS15540 -1.6 -9.6 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS15550 -1.6 -6.2 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS15580 -1.6 -6.9 enterochelin esterase compare
DZA65_RS22240 -1.5 -9.5 thiol:disulfide interchange protein DsbA compare
DZA65_RS01790 -1.5 -10.5 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS20220 -1.5 -9.2 glucose-6-phosphate isomerase compare
DZA65_RS22635 -1.5 -4.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS01615 -1.5 -8.6 stringent starvation protein A compare
DZA65_RS10060 -1.4 -5.1 ATP phosphoribosyltransferase compare
DZA65_RS07460 -1.4 -5.3 SDR family oxidoreductase compare
DZA65_RS02680 -1.4 -8.3 heavy metal translocating P-type ATPase compare
DZA65_RS21090 -1.4 -1.9 tyrosine recombinase XerC compare
DZA65_RS19350 -1.4 -3.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS03415 -1.4 -6.8 DUF1435 domain-containing protein compare
DZA65_RS21745 -1.3 -4.8 aspartate 1-decarboxylase autocleavage activator PanM compare
DZA65_RS15480 -1.3 -7.6 phosphohistidine phosphatase SixA compare
DZA65_RS13755 -1.3 -7.9 glucan biosynthesis protein G compare
DZA65_RS21330 -1.3 -9.3 threonine ammonia-lyase, biosynthetic compare
DZA65_RS15555 -1.3 -6.3 iron-enterobactin ABC transporter permease compare
DZA65_RS17690 -1.3 -9.8 glutamate-5-semialdehyde dehydrogenase compare
DZA65_RS13085 -1.3 -4.4 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS09035 -1.3 -3.6 ABC transporter ATP-binding protein compare
DZA65_RS17695 -1.3 -5.3 glutamate 5-kinase compare
DZA65_RS00870 -1.3 -8.2 HTH-type transcriptional regulator MetR compare
DZA65_RS05490 -1.2 -8.2 sigma E protease regulator RseP compare
DZA65_RS20840 -1.2 -4.0 two-component system response regulator OmpR compare
DZA65_RS15370 -1.2 -5.5 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS21525 -1.2 -9.0 aquaporin family protein compare
DZA65_RS16635 -1.2 -2.3 outer membrane protein assembly factor BamB compare
DZA65_RS10810 -1.2 -7.4 formyltetrahydrofolate deformylase compare
DZA65_RS03635 -1.2 -6.7 sugar transferase compare
DZA65_RS21440 -1.2 -9.3 HTH-type transcriptional repressor FabR compare
DZA65_RS13750 -1.2 -8.8 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS09025 -1.2 -7.6 iron ABC transporter substrate-binding protein compare
DZA65_RS22640 -1.1 -5.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS12505 -1.1 -5.4 carboxy terminal-processing peptidase compare
DZA65_RS11175 -1.1 -4.4 DUF2384 domain-containing protein compare
DZA65_RS05965 -1.1 -4.1 protoheme IX farnesyltransferase compare
DZA65_RS01795 -1.1 -3.2 TonB system transport protein ExbD compare
DZA65_RS02095 -1.1 -2.6 helix-turn-helix transcriptional regulator compare
DZA65_RS15545 -1.1 -6.9 enterobactin transporter EntS compare
DZA65_RS11865 -1.1 -3.5 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS01215 -1.1 -8.9 phosphomethylpyrimidine synthase ThiC compare
DZA65_RS16715 -1.1 -1.7 Fe-S cluster assembly scaffold IscU compare
DZA65_RS11565 -1.1 -3.2 disulfide bond formation protein DsbB compare
DZA65_RS11435 -1.1 -3.3 redox-regulated ATPase YchF compare
DZA65_RS06895 -1.1 -3.8 Tol-Pal system protein TolQ compare
DZA65_RS10960 -1.1 -2.8 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS20355 -1.1 -3.8 Trk system potassium transporter TrkA compare
DZA65_RS01510 -1.1 -5.0 RNA polymerase factor sigma-54 compare
DZA65_RS01210 -1.1 -7.3 thiamine phosphate synthase compare
DZA65_RS19345 -1.1 -6.9 Co2+/Mg2+ efflux protein ApaG compare
DZA65_RS12975 -1.0 -3.6 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS13875 -1.0 -7.6 flagellar filament capping protein FliD compare
DZA65_RS19475 -1.0 -2.9 threonine synthase compare
DZA65_RS19495 -1.0 -1.5 two-component system response regulator ArcA compare
DZA65_RS16935 -1.0 -7.4 L-aspartate oxidase compare
DZA65_RS07665 -1.0 -2.2 AlpA family transcriptional regulator compare
DZA65_RS01500 -1.0 -4.8 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS11900 -1.0 -1.5 hypothetical protein compare
DZA65_RS16170 -1.0 -7.6 multidrug efflux RND transporter permease subunit MdtC conserved
DZA65_RS06820 -0.9 -2.2 citrate synthase compare
DZA65_RS20930 -0.9 -7.9 1,4-alpha-glucan branching protein GlgB compare
DZA65_RS05985 -0.9 -3.4 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS05885 -0.9 -4.1 transcriptional regulator NrdR compare
DZA65_RS13880 -0.9 -4.4 flagellar export chaperone FliS compare
DZA65_RS06900 -0.9 -1.2 colicin uptake protein TolR compare
DZA65_RS22145 -0.9 -2.3 DNA-directed RNA polymerase subunit omega compare
DZA65_RS00420 -0.9 -5.0 FtsX-like permease family protein compare
DZA65_RS08845 -0.9 -3.2 hypothetical protein compare
DZA65_RS06945 -0.9 -6.0 quinolinate synthase NadA compare
DZA65_RS20545 -0.9 -1.9 sulfurtransferase complex subunit TusB compare
DZA65_RS09915 -0.9 -4.7 leucine-responsive transcriptional regulator Lrp compare
DZA65_RS22625 -0.9 -5.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DZA65_RS09910 -0.9 -3.2 thioredoxin-disulfide reductase compare
DZA65_RS01710 -0.8 -1.9 outer membrane channel protein TolC compare
DZA65_RS21540 -0.8 -3.2 ferredoxin--NADP(+) reductase compare
DZA65_RS21275 -0.8 -5.6 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS18080 -0.8 -2.0 phosphoadenylyl-sulfate reductase compare
DZA65_RS17015 -0.8 -2.1 PTS lactose/cellobiose transporter subunit IIA compare
DZA65_RS21790 -0.8 -1.7 sulfurtransferase TusA compare
DZA65_RS19035 -0.8 -5.3 carboxylating nicotinate-nucleotide diphosphorylase compare
DZA65_RS01050 -0.8 -5.7 Trk system potassium transporter TrkH compare
DZA65_RS10980 -0.8 -2.6 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS00845 -0.8 -1.2 protein-export chaperone SecB compare
DZA65_RS01195 -0.8 -3.8 thiazole synthase compare
DZA65_RS21050 -0.8 -2.0 hypothetical protein compare
DZA65_RS20805 -0.8 -1.3 intracellular growth attenuator family protein compare
DZA65_RS16165 -0.8 -6.4 MdtB/MuxB family multidrug efflux RND transporter permease subunit compare
DZA65_RS16045 -0.8 -3.8 polyphosphate kinase 1 compare
DZA65_RS12910 -0.8 -4.9 transcriptional regulator TyrR compare
DZA65_RS05975 -0.8 -1.3 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS20555 -0.8 -2.2 sulfurtransferase complex subunit TusD compare
DZA65_RS01620 -0.8 -3.6 ClpXP protease specificity-enhancing factor compare
DZA65_RS01205 -0.7 -1.8 HesA/MoeB/ThiF family protein compare
DZA65_RS09030 -0.7 -5.3 iron ABC transporter permease compare
DZA65_RS01495 -0.7 -3.9 RNase adapter RapZ compare
DZA65_RS05930 -0.7 -4.1 tRNA 4-thiouridine(8) synthase ThiI compare
DZA65_RS17270 -0.7 -6.2 murein transglycosylase D compare
DZA65_RS15380 -0.7 -4.1 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS04230 -0.7 -4.1 outer membrane protein assembly factor BamE compare
DZA65_RS18555 -0.7 -3.6 LysR family transcriptional regulator compare
DZA65_RS21460 -0.7 -5.6 methylenetetrahydrofolate reductase compare
DZA65_RS16090 -0.7 -1.3 sulfurtransferase TusE compare
DZA65_RS18455 -0.7 -3.0 XTP/dITP diphosphatase compare
DZA65_RS16670 -0.7 -2.5 nucleoside-diphosphate kinase compare
DZA65_RS06020 -0.7 -3.9 endopeptidase La compare
DZA65_RS20550 -0.7 -1.9 sulfurtransferase complex subunit TusC compare
DZA65_RS07685 -0.7 -1.5 helix-turn-helix transcriptional regulator compare
DZA65_RS09705 -0.7 -4.3 outer membrane permeability protein SanA compare
DZA65_RS04160 -0.7 -1.7 DUF2590 family protein compare
DZA65_RS20920 -0.7 -5.5 glucose-1-phosphate adenylyltransferase compare
DZA65_RS18410 -0.7 -3.8 nitric oxide-sensing transcriptional repressor NsrR compare
DZA65_RS22360 -0.7 -5.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS19630 -0.7 -4.3 glutathione synthase compare
DZA65_RS13125 -0.7 -2.5 Grx4 family monothiol glutaredoxin compare
DZA65_RS13595 -0.6 -2.4 penicillin-binding protein activator LpoB compare
DZA65_RS09240 -0.6 -1.3 biotin carboxyl carrier domain-containing protein compare
DZA65_RS13670 -0.6 -3.0 phosphate acyltransferase PlsX compare
DZA65_RS17245 -0.6 -1.8 tRNA-Asp compare
DZA65_RS20905 -0.6 -1.3 glycerol-3-phosphate dehydrogenase compare
DZA65_RS21445 -0.6 -2.4 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS16235 -0.6 -4.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
DZA65_RS13450 -0.6 -5.2 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS05840 -0.6 -1.6 peroxiredoxin C compare
DZA65_RS09555 -0.6 -2.9 proteinase inhibitor compare
DZA65_RS19270 -0.6 -4.6 acetolactate synthase large subunit compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Glycerol in Dickeya dianthicola ME23

For carbon source Glycerol across organisms