Experiment setATCH247 for Dickeya dianthicola ME23

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.6 -10.4 thymidylate synthase compare
DZA65_RS19480 -3.1 -6.6 homoserine kinase compare
DZA65_RS06685 -3.1 -17.8 asparagine synthase B compare
DZA65_RS15995 -3.1 -11.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS21470 -3.0 -18.4 cystathionine gamma-synthase compare
DZA65_RS10045 -2.9 -7.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS01260 -2.9 -17.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS19540 -2.9 -7.9 phosphoglycerate dehydrogenase compare
DZA65_RS20275 -2.9 -14.5 homoserine O-succinyltransferase compare
DZA65_RS01970 -2.8 -15.6 aspartate carbamoyltransferase compare
DZA65_RS02490 -2.8 -11.2 phosphoserine phosphatase compare
DZA65_RS21310 -2.8 -14.9 ketol-acid reductoisomerase compare
DZA65_RS19210 -2.7 -12.7 3-isopropylmalate dehydratase large subunit compare
DZA65_RS22210 -2.7 -13.4 nitrogen regulation protein NR(I) compare
DZA65_RS00355 -2.7 -15.0 argininosuccinate synthase compare
DZA65_RS13030 -2.6 -11.0 orotidine-5'-phosphate decarboxylase compare
DZA65_RS00735 -2.6 -6.8 orotate phosphoribosyltransferase compare
DZA65_RS17390 -2.6 -16.5 inner membrane protein YpjD compare
DZA65_RS19200 -2.5 -15.6 2-isopropylmalate synthase compare
DZA65_RS13390 -2.5 -8.7 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS10055 -2.5 -5.1 histidinol dehydrogenase compare
DZA65_RS19215 -2.5 -6.4 3-isopropylmalate dehydratase small subunit compare
DZA65_RS19205 -2.5 -11.8 3-isopropylmalate dehydrogenase compare
DZA65_RS00940 -2.4 -8.4 acetylglutamate kinase compare
DZA65_RS19645 -2.4 -15.4 class 1 fructose-bisphosphatase compare
DZA65_RS10030 -2.4 -4.3 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS13710 -2.4 -11.5 dihydroorotase compare
DZA65_RS01635 -2.4 -18.2 glutamate synthase large subunit compare
DZA65_RS00945 -2.4 -11.4 argininosuccinate lyase compare
DZA65_RS19380 -2.4 -14.7 carbamoyl-phosphate synthase large subunit compare
DZA65_RS05340 -2.3 -12.7 amino-acid N-acetyltransferase compare
DZA65_RS01985 -2.3 -12.6 ornithine carbamoyltransferase compare
DZA65_RS21335 -2.3 -12.1 dihydroxy-acid dehydratase compare
DZA65_RS01630 -2.3 -11.7 FAD-dependent oxidoreductase compare
DZA65_RS10940 -2.3 -10.9 tryptophan synthase subunit alpha compare
DZA65_RS19385 -2.2 -10.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS01580 -2.2 -16.4 outer membrane-stress sensor serine endopeptidase DegS compare
DZA65_RS06470 -2.2 -7.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS17155 -2.2 -10.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DZA65_RS22240 -2.2 -12.4 thiol:disulfide interchange protein DsbA compare
DZA65_RS19655 -2.2 -3.3 adenylosuccinate synthase compare
DZA65_RS00895 -2.1 -12.9 phosphoenolpyruvate carboxylase compare
DZA65_RS16930 -2.1 -12.8 RNA polymerase sigma factor RpoE compare
DZA65_RS00800 -2.1 -3.3 O-antigen ligase family protein compare
DZA65_RS09455 -2.1 -4.9 DUF3413 domain-containing protein compare
DZA65_RS15990 -2.1 -4.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS10965 -2.0 -11.1 anthranilate synthase component 1 compare
DZA65_RS00935 -2.0 -10.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
DZA65_RS13085 -2.0 -5.4 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS18550 -2.0 -7.8 diaminopimelate decarboxylase compare
DZA65_RS21530 -2.0 -12.8 glycerol kinase GlpK compare
DZA65_RS00930 -2.0 -10.4 acetylornithine deacetylase compare
DZA65_RS21475 -2.0 -3.7 met regulon transcriptional regulator MetJ compare
DZA65_RS17345 -1.9 -9.0 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS10025 -1.9 -6.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS16830 -1.9 -15.5 phosphoribosylformylglycinamidine synthase compare
DZA65_RS01255 -1.9 -10.5 phosphoribosylamine--glycine ligase compare
DZA65_RS06420 -1.9 -10.8 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS19350 -1.9 -4.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS21090 -1.8 -2.7 tyrosine recombinase XerC compare
DZA65_RS10950 -1.8 -8.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS05975 -1.8 -2.6 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS15335 -1.8 -12.5 amidophosphoribosyltransferase compare
DZA65_RS03230 -1.8 -3.6 transcription termination/antitermination protein NusA compare
DZA65_RS10945 -1.8 -9.8 tryptophan synthase subunit beta compare
DZA65_RS17165 -1.8 -10.5 aspartate 1-decarboxylase compare
DZA65_RS17160 -1.8 -7.9 pantoate--beta-alanine ligase compare
DZA65_RS18320 -1.7 -6.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS01615 -1.7 -10.4 stringent starvation protein A compare
DZA65_RS10955 -1.7 -6.4 anthranilate phosphoribosyltransferase compare
DZA65_RS10825 -1.7 -8.7 two-component system response regulator RssB compare
DZA65_RS15585 -1.7 -13.7 TonB-dependent siderophore receptor compare
DZA65_RS19485 -1.6 -11.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DZA65_RS10905 -1.6 -5.4 TonB system transport protein TonB compare
DZA65_RS01785 -1.6 -10.0 cystathionine beta-lyase compare
DZA65_RS01710 -1.6 -2.7 outer membrane channel protein TolC compare
DZA65_RS02680 -1.6 -8.7 heavy metal translocating P-type ATPase compare
DZA65_RS11565 -1.5 -3.8 disulfide bond formation protein DsbB compare
DZA65_RS17690 -1.5 -10.3 glutamate-5-semialdehyde dehydrogenase compare
DZA65_RS06220 -1.5 -10.4 hypothetical protein conserved
DZA65_RS06900 -1.5 -2.8 colicin uptake protein TolR compare
DZA65_RS10960 -1.4 -3.2 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS19475 -1.4 -3.6 threonine synthase compare
DZA65_RS12975 -1.4 -6.8 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS01790 -1.4 -9.7 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS15580 -1.4 -7.3 enterochelin esterase compare
DZA65_RS15480 -1.4 -7.1 phosphohistidine phosphatase SixA compare
DZA65_RS20915 -1.4 -10.6 glycogen synthase GlgA compare
DZA65_RS15545 -1.4 -8.0 enterobactin transporter EntS compare
DZA65_RS15370 -1.4 -4.7 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS11915 -1.4 -2.8 ferrous iron transport protein A compare
DZA65_RS15540 -1.3 -7.5 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS10050 -1.3 -4.2 histidinol-phosphate transaminase compare
DZA65_RS20555 -1.3 -3.4 sulfurtransferase complex subunit TusD compare
DZA65_RS05490 -1.3 -8.9 sigma E protease regulator RseP compare
DZA65_RS00870 -1.3 -6.7 HTH-type transcriptional regulator MetR compare
DZA65_RS01510 -1.3 -5.5 RNA polymerase factor sigma-54 compare
DZA65_RS11435 -1.3 -4.2 redox-regulated ATPase YchF compare
DZA65_RS21330 -1.2 -9.1 threonine ammonia-lyase, biosynthetic compare
DZA65_RS15550 -1.2 -5.5 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS20355 -1.2 -3.7 Trk system potassium transporter TrkA compare
DZA65_RS10810 -1.2 -6.9 formyltetrahydrofolate deformylase compare
DZA65_RS13755 -1.2 -6.8 glucan biosynthesis protein G compare
DZA65_RS15380 -1.2 -6.5 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS15555 -1.2 -6.5 iron-enterobactin ABC transporter permease compare
DZA65_RS16635 -1.2 -2.0 outer membrane protein assembly factor BamB compare
DZA65_RS09915 -1.2 -5.1 leucine-responsive transcriptional regulator Lrp compare
DZA65_RS01795 -1.2 -4.3 TonB system transport protein ExbD compare
DZA65_RS03415 -1.1 -6.5 DUF1435 domain-containing protein compare
DZA65_RS19685 -1.1 -1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS19345 -1.1 -7.3 Co2+/Mg2+ efflux protein ApaG compare
DZA65_RS20550 -1.1 -3.2 sulfurtransferase complex subunit TusC compare
DZA65_RS07685 -1.1 -2.0 helix-turn-helix transcriptional regulator compare
DZA65_RS21525 -1.1 -8.2 aquaporin family protein compare
DZA65_RS06895 -1.1 -4.1 Tol-Pal system protein TolQ compare
DZA65_RS20545 -1.1 -2.8 sulfurtransferase complex subunit TusB compare
DZA65_RS05930 -1.1 -4.3 tRNA 4-thiouridine(8) synthase ThiI compare
DZA65_RS05965 -1.1 -3.3 protoheme IX farnesyltransferase compare
DZA65_RS20220 -1.1 -6.9 glucose-6-phosphate isomerase compare
DZA65_RS10060 -1.1 -4.7 ATP phosphoribosyltransferase compare
DZA65_RS13875 -1.0 -8.0 flagellar filament capping protein FliD compare
DZA65_RS09035 -1.0 -3.1 ABC transporter ATP-binding protein compare
DZA65_RS13880 -1.0 -4.7 flagellar export chaperone FliS compare
DZA65_RS22875 -1.0 -1.5 hypothetical protein compare
DZA65_RS12505 -1.0 -4.9 carboxy terminal-processing peptidase compare
DZA65_RS13750 -1.0 -7.7 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS09025 -1.0 -6.8 iron ABC transporter substrate-binding protein compare
DZA65_RS01620 -1.0 -5.0 ClpXP protease specificity-enhancing factor compare
DZA65_RS09990 -1.0 -1.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS17695 -1.0 -3.6 glutamate 5-kinase compare
DZA65_RS01275 -0.9 -2.0 23S ribosomal RNA compare
DZA65_RS01495 -0.9 -4.6 RNase adapter RapZ compare
DZA65_RS21745 -0.9 -2.9 aspartate 1-decarboxylase autocleavage activator PanM compare
DZA65_RS03665 -0.9 -2.6 TOBE domain-containing protein compare
DZA65_RS06945 -0.9 -7.1 quinolinate synthase NadA compare
DZA65_RS11525 -0.9 -3.1 hypothetical protein compare
DZA65_RS01215 -0.9 -7.7 phosphomethylpyrimidine synthase ThiC compare
DZA65_RS20905 -0.9 -2.0 glycerol-3-phosphate dehydrogenase compare
DZA65_RS16935 -0.9 -6.6 L-aspartate oxidase compare
DZA65_RS16165 -0.9 -7.0 MdtB/MuxB family multidrug efflux RND transporter permease subunit compare
DZA65_RS01500 -0.9 -3.7 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS16090 -0.9 -1.3 sulfurtransferase TusE compare
DZA65_RS16170 -0.8 -7.3 multidrug efflux RND transporter permease subunit MdtC conserved
DZA65_RS01210 -0.8 -6.3 thiamine phosphate synthase compare
DZA65_RS00845 -0.8 -1.4 protein-export chaperone SecB compare
DZA65_RS19035 -0.8 -5.4 carboxylating nicotinate-nucleotide diphosphorylase compare
DZA65_RS09030 -0.8 -6.0 iron ABC transporter permease compare
DZA65_RS21540 -0.8 -3.9 ferredoxin--NADP(+) reductase compare
DZA65_RS11865 -0.8 -3.1 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS05980 -0.8 -4.7 cytochrome o ubiquinol oxidase subunit I compare
DZA65_RS03185 -0.8 -0.9 ribosome assembly RNA-binding protein YhbY compare
DZA65_RS01050 -0.8 -5.3 Trk system potassium transporter TrkH compare
DZA65_RS19270 -0.8 -5.2 acetolactate synthase large subunit compare
DZA65_RS03635 -0.8 -4.5 sugar transferase compare
DZA65_RS20930 -0.8 -6.6 1,4-alpha-glucan branching protein GlgB compare
DZA65_RS21800 -0.8 -1.7 DcrB family lipoprotein compare
DZA65_RS18400 -0.7 -2.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DZA65_RS22695 -0.7 -4.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS01505 -0.7 -3.9 ribosome hibernation promoting factor compare
DZA65_RS13230 -0.7 -2.2 DUF1471 domain-containing protein compare
DZA65_RS10890 -0.7 -5.2 cardiolipin synthase compare
DZA65_RS07460 -0.7 -2.9 SDR family oxidoreductase compare
DZA65_RS13450 -0.7 -6.1 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS00420 -0.7 -4.1 FtsX-like permease family protein compare
DZA65_RS10980 -0.7 -2.2 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS05855 -0.7 -4.0 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS16160 -0.7 -5.0 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit conserved
DZA65_RS07665 -0.7 -1.7 AlpA family transcriptional regulator compare
DZA65_RS11175 -0.7 -2.7 DUF2384 domain-containing protein compare
DZA65_RS16370 -0.7 -1.0 hypothetical protein compare
DZA65_RS18270 -0.7 -2.0 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DZA65_RS22635 -0.7 -2.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS21440 -0.7 -5.0 HTH-type transcriptional repressor FabR compare
DZA65_RS22360 -0.7 -5.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS04355 -0.7 -4.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS20840 -0.7 -2.4 two-component system response regulator OmpR compare
DZA65_RS13125 -0.6 -2.6 Grx4 family monothiol glutaredoxin compare
DZA65_RS09375 -0.6 -1.0 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS20255 -0.6 -3.8 glyoxylate bypass operon transcriptional repressor IclR compare
DZA65_RS16715 -0.6 -1.1 Fe-S cluster assembly scaffold IscU compare
DZA65_RS21460 -0.6 -4.8 methylenetetrahydrofolate reductase compare
DZA65_RS21275 -0.6 -4.4 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS22640 -0.6 -3.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS15135 -0.6 -1.6 hypothetical protein compare
DZA65_RS13330 -0.6 -3.6 AI-2E family transporter YdiK compare
DZA65_RS13310 -0.6 -2.9 Fe-S cluster assembly scaffold SufA compare
DZA65_RS22145 -0.6 -1.6 DNA-directed RNA polymerase subunit omega compare
DZA65_RS03705 -0.6 -3.0 hypothetical protein compare
DZA65_RS20875 -0.6 -1.3 Fe-S biogenesis protein NfuA compare
DZA65_RS20920 -0.6 -5.0 glucose-1-phosphate adenylyltransferase compare
DZA65_RS14885 -0.6 -1.7 HyaD/HybD family hydrogenase maturation endopeptidase compare
DZA65_RS02475 -0.6 -1.9 5-formyltetrahydrofolate cyclo-ligase compare
DZA65_RS16045 -0.6 -3.1 polyphosphate kinase 1 compare
DZA65_RS02300 -0.6 -1.0 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS05985 -0.6 -2.1 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS02010 -0.6 -2.5 GNAT family N-acetyltransferase compare
DZA65_RS06020 -0.6 -3.1 endopeptidase La compare
DZA65_RS02790 -0.6 -2.9 DUF4868 domain-containing protein compare
DZA65_RS12910 -0.6 -3.7 transcriptional regulator TyrR compare
DZA65_RS07560 -0.6 -1.4 type II toxin-antitoxin system CcdA family antitoxin compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Glycerol in Dickeya dianthicola ME23

For carbon source Glycerol across organisms