Experiment setATCH246 for Dickeya dianthicola ME23

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DZA65_RS19215 -4.6 -6.2 3-isopropylmalate dehydratase small subunit compare
DZA65_RS05310 -3.7 -10.3 thymidylate synthase compare
DZA65_RS10030 -3.3 -3.9 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS21470 -3.2 -18.5 cystathionine gamma-synthase compare
DZA65_RS06685 -3.1 -17.3 asparagine synthase B compare
DZA65_RS19200 -3.0 -19.9 2-isopropylmalate synthase compare
DZA65_RS15995 -3.0 -11.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS19540 -3.0 -9.0 phosphoglycerate dehydrogenase compare
DZA65_RS20275 -2.9 -13.1 homoserine O-succinyltransferase compare
DZA65_RS02490 -2.8 -11.9 phosphoserine phosphatase compare
DZA65_RS21335 -2.8 -15.3 dihydroxy-acid dehydratase compare
DZA65_RS01260 -2.7 -14.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS19350 -2.7 -6.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS22210 -2.7 -13.9 nitrogen regulation protein NR(I) compare
DZA65_RS19480 -2.7 -6.0 homoserine kinase compare
DZA65_RS19205 -2.7 -12.9 3-isopropylmalate dehydrogenase compare
DZA65_RS01630 -2.7 -13.2 FAD-dependent oxidoreductase compare
DZA65_RS00735 -2.7 -9.0 orotate phosphoribosyltransferase compare
DZA65_RS09455 -2.7 -6.6 DUF3413 domain-containing protein compare
DZA65_RS01635 -2.6 -19.7 glutamate synthase large subunit compare
DZA65_RS19385 -2.6 -12.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS21310 -2.6 -12.5 ketol-acid reductoisomerase compare
DZA65_RS01970 -2.6 -13.6 aspartate carbamoyltransferase compare
DZA65_RS19210 -2.6 -10.7 3-isopropylmalate dehydratase large subunit compare
DZA65_RS21090 -2.6 -3.0 tyrosine recombinase XerC compare
DZA65_RS13390 -2.6 -11.5 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS13710 -2.6 -12.7 dihydroorotase compare
DZA65_RS13030 -2.6 -11.2 orotidine-5'-phosphate decarboxylase compare
DZA65_RS19655 -2.5 -2.9 adenylosuccinate synthase compare
DZA65_RS17390 -2.5 -15.9 inner membrane protein YpjD compare
DZA65_RS21530 -2.5 -15.4 glycerol kinase GlpK compare
DZA65_RS06470 -2.5 -8.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS00935 -2.4 -12.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
DZA65_RS19645 -2.4 -14.1 class 1 fructose-bisphosphatase compare
DZA65_RS19380 -2.4 -13.6 carbamoyl-phosphate synthase large subunit compare
DZA65_RS10045 -2.4 -5.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS10050 -2.4 -6.8 histidinol-phosphate transaminase compare
DZA65_RS00940 -2.3 -9.4 acetylglutamate kinase compare
DZA65_RS17345 -2.3 -11.5 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS00355 -2.3 -12.0 argininosuccinate synthase compare
DZA65_RS00945 -2.3 -11.7 argininosuccinate lyase compare
DZA65_RS10025 -2.3 -7.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS17160 -2.3 -9.1 pantoate--beta-alanine ligase compare
DZA65_RS00895 -2.2 -13.1 phosphoenolpyruvate carboxylase compare
DZA65_RS03230 -2.2 -3.5 transcription termination/antitermination protein NusA compare
DZA65_RS10960 -2.2 -4.9 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS22240 -2.2 -10.7 thiol:disulfide interchange protein DsbA compare
DZA65_RS17155 -2.2 -9.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DZA65_RS00800 -2.1 -4.4 O-antigen ligase family protein compare
DZA65_RS01985 -2.1 -10.6 ornithine carbamoyltransferase compare
DZA65_RS16830 -2.0 -16.1 phosphoribosylformylglycinamidine synthase compare
DZA65_RS01785 -2.0 -11.6 cystathionine beta-lyase compare
DZA65_RS12975 -2.0 -7.8 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS06420 -2.0 -9.9 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS01580 -2.0 -15.4 outer membrane-stress sensor serine endopeptidase DegS compare
DZA65_RS10965 -2.0 -10.4 anthranilate synthase component 1 compare
DZA65_RS18320 -1.9 -6.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS18550 -1.9 -6.7 diaminopimelate decarboxylase compare
DZA65_RS10945 -1.9 -10.9 tryptophan synthase subunit beta compare
DZA65_RS10940 -1.9 -7.6 tryptophan synthase subunit alpha compare
DZA65_RS10055 -1.9 -4.8 histidinol dehydrogenase compare
DZA65_RS16930 -1.9 -12.0 RNA polymerase sigma factor RpoE compare
DZA65_RS15335 -1.8 -12.7 amidophosphoribosyltransferase compare
DZA65_RS17165 -1.8 -10.7 aspartate 1-decarboxylase compare
DZA65_RS16635 -1.8 -3.6 outer membrane protein assembly factor BamB compare
DZA65_RS05340 -1.8 -11.2 amino-acid N-acetyltransferase compare
DZA65_RS00930 -1.8 -10.1 acetylornithine deacetylase compare
DZA65_RS19485 -1.8 -11.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DZA65_RS10950 -1.7 -8.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS01615 -1.7 -10.2 stringent starvation protein A compare
DZA65_RS01255 -1.7 -9.6 phosphoribosylamine--glycine ligase compare
DZA65_RS19475 -1.6 -4.0 threonine synthase compare
DZA65_RS10810 -1.6 -9.3 formyltetrahydrofolate deformylase compare
DZA65_RS16090 -1.5 -2.7 sulfurtransferase TusE compare
DZA65_RS09035 -1.5 -3.7 ABC transporter ATP-binding protein compare
DZA65_RS15990 -1.5 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS07460 -1.5 -5.8 SDR family oxidoreductase compare
DZA65_RS16715 -1.5 -2.0 Fe-S cluster assembly scaffold IscU compare
DZA65_RS10825 -1.5 -8.2 two-component system response regulator RssB compare
DZA65_RS15580 -1.5 -6.7 enterochelin esterase compare
DZA65_RS15555 -1.5 -7.7 iron-enterobactin ABC transporter permease compare
DZA65_RS15480 -1.5 -7.1 phosphohistidine phosphatase SixA compare
DZA65_RS00870 -1.4 -8.1 HTH-type transcriptional regulator MetR compare
DZA65_RS02680 -1.4 -7.7 heavy metal translocating P-type ATPase compare
DZA65_RS21745 -1.4 -4.2 aspartate 1-decarboxylase autocleavage activator PanM compare
DZA65_RS11565 -1.4 -4.4 disulfide bond formation protein DsbB compare
DZA65_RS15545 -1.4 -7.3 enterobactin transporter EntS compare
DZA65_RS10905 -1.4 -6.0 TonB system transport protein TonB compare
DZA65_RS21330 -1.3 -9.6 threonine ammonia-lyase, biosynthetic compare
DZA65_RS09915 -1.3 -6.7 leucine-responsive transcriptional regulator Lrp compare
DZA65_RS15585 -1.3 -11.1 TonB-dependent siderophore receptor compare
DZA65_RS20915 -1.3 -10.4 glycogen synthase GlgA compare
DZA65_RS17690 -1.3 -9.0 glutamate-5-semialdehyde dehydrogenase compare
DZA65_RS21525 -1.3 -9.5 aquaporin family protein compare
DZA65_RS01790 -1.3 -9.0 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS20220 -1.3 -8.5 glucose-6-phosphate isomerase compare
DZA65_RS15540 -1.2 -7.5 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS13875 -1.2 -9.1 flagellar filament capping protein FliD compare
DZA65_RS01510 -1.2 -5.1 RNA polymerase factor sigma-54 compare
DZA65_RS10955 -1.2 -4.4 anthranilate phosphoribosyltransferase compare
DZA65_RS20805 -1.2 -2.2 intracellular growth attenuator family protein compare
DZA65_RS09025 -1.2 -8.5 iron ABC transporter substrate-binding protein compare
DZA65_RS09030 -1.2 -7.5 iron ABC transporter permease compare
DZA65_RS13750 -1.2 -9.4 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS15370 -1.2 -4.2 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS11395 -1.1 -2.7 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS03605 -1.1 -2.3 cation efflux system protein CusF compare
DZA65_RS01620 -1.1 -5.0 ClpXP protease specificity-enhancing factor compare
DZA65_RS11435 -1.1 -3.2 redox-regulated ATPase YchF compare
DZA65_RS19345 -1.1 -7.3 Co2+/Mg2+ efflux protein ApaG compare
DZA65_RS20355 -1.1 -3.9 Trk system potassium transporter TrkA compare
DZA65_RS13085 -1.1 -3.1 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS06220 -1.1 -7.5 hypothetical protein conserved
DZA65_RS06945 -1.1 -7.5 quinolinate synthase NadA compare
DZA65_RS09990 -1.1 -2.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS22145 -1.0 -2.5 DNA-directed RNA polymerase subunit omega compare
DZA65_RS13450 -1.0 -8.3 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS18080 -1.0 -3.1 phosphoadenylyl-sulfate reductase compare
DZA65_RS15550 -1.0 -5.3 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS05490 -1.0 -6.9 sigma E protease regulator RseP compare
DZA65_RS16935 -1.0 -7.7 L-aspartate oxidase compare
DZA65_RS10060 -1.0 -3.8 ATP phosphoribosyltransferase compare
DZA65_RS11865 -1.0 -3.5 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS03415 -1.0 -6.5 DUF1435 domain-containing protein compare
DZA65_RS13755 -1.0 -5.6 glucan biosynthesis protein G compare
DZA65_RS01500 -1.0 -4.1 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS06895 -1.0 -3.1 Tol-Pal system protein TolQ compare
DZA65_RS18650 -1.0 -3.1 alanine racemase compare
DZA65_RS19035 -1.0 -6.3 carboxylating nicotinate-nucleotide diphosphorylase compare
DZA65_RS09520 -0.9 -3.6 microcin C ABC transporter ATP-binding protein YejF compare
DZA65_RS15380 -0.9 -5.4 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS01210 -0.9 -6.8 thiamine phosphate synthase compare
DZA65_RS21540 -0.9 -3.6 ferredoxin--NADP(+) reductase compare
DZA65_RS12505 -0.9 -4.6 carboxy terminal-processing peptidase compare
DZA65_RS00095 -0.9 -2.4 AsnC family transcriptional regulator compare
DZA65_RS05980 -0.8 -4.4 cytochrome o ubiquinol oxidase subunit I compare
DZA65_RS21790 -0.8 -2.1 sulfurtransferase TusA compare
DZA65_RS05965 -0.8 -3.0 protoheme IX farnesyltransferase compare
DZA65_RS10485 -0.8 -2.8 membrane protein compare
DZA65_RS20555 -0.8 -2.4 sulfurtransferase complex subunit TusD compare
DZA65_RS21275 -0.8 -5.5 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS01050 -0.8 -5.7 Trk system potassium transporter TrkH compare
DZA65_RS05855 -0.8 -4.7 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS17695 -0.8 -3.2 glutamate 5-kinase compare
DZA65_RS22625 -0.8 -5.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DZA65_RS21800 -0.8 -1.5 DcrB family lipoprotein compare
DZA65_RS01795 -0.8 -2.9 TonB system transport protein ExbD compare
DZA65_RS05295 -0.8 -1.7 RNA pyrophosphohydrolase compare
DZA65_RS11915 -0.8 -1.8 ferrous iron transport protein A compare
DZA65_RS09910 -0.8 -3.0 thioredoxin-disulfide reductase compare
DZA65_RS05930 -0.8 -3.7 tRNA 4-thiouridine(8) synthase ThiI compare
DZA65_RS13880 -0.7 -3.5 flagellar export chaperone FliS compare
DZA65_RS01505 -0.7 -3.4 ribosome hibernation promoting factor compare
DZA65_RS18975 -0.7 -1.4 helix-turn-helix transcriptional regulator compare
DZA65_RS20655 -0.7 -5.4 aspartate aminotransferase family protein compare
DZA65_RS20930 -0.7 -6.4 1,4-alpha-glucan branching protein GlgB compare
DZA65_RS03705 -0.7 -3.4 hypothetical protein compare
DZA65_RS12910 -0.7 -4.6 transcriptional regulator TyrR compare
DZA65_RS13125 -0.7 -2.8 Grx4 family monothiol glutaredoxin compare
DZA65_RS22990 -0.7 -2.3 hypothetical protein compare
DZA65_RS20840 -0.7 -3.1 two-component system response regulator OmpR compare
DZA65_RS00675 -0.7 -1.8 isoaspartyl peptidase/L-asparaginase compare
DZA65_RS20005 -0.7 -1.3 helix-turn-helix transcriptional regulator compare
DZA65_RS14990 -0.7 -5.0 transcriptional regulator LrhA compare
DZA65_RS22060 -0.7 -2.4 DUF1471 domain-containing protein compare
DZA65_RS16045 -0.7 -3.5 polyphosphate kinase 1 compare
DZA65_RS19670 -0.7 -2.7 FtsH protease activity modulator HflK compare
DZA65_RS15135 -0.7 -1.5 hypothetical protein compare
DZA65_RS22735 -0.7 -1.2 hypothetical protein compare
DZA65_RS20550 -0.7 -1.4 sulfurtransferase complex subunit TusC compare
DZA65_RS20545 -0.7 -2.0 sulfurtransferase complex subunit TusB compare
DZA65_RS17400 -0.6 -3.6 glutamate--cysteine ligase compare
DZA65_RS22360 -0.6 -5.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS07665 -0.6 -1.5 AlpA family transcriptional regulator compare
DZA65_RS11175 -0.6 -2.6 DUF2384 domain-containing protein compare
DZA65_RS03955 -0.6 -2.4 hypothetical protein compare
DZA65_RS22635 -0.6 -2.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS13025 -0.6 -1.3 stress response translation initiation inhibitor YciH compare
DZA65_RS12955 -0.6 -3.7 peptide ABC transporter substrate-binding protein SapA compare
DZA65_RS14310 -0.6 -1.4 LysR family transcriptional regulator compare
DZA65_RS21270 -0.6 -5.1 ATP-dependent RNA helicase RhlB compare
DZA65_RS13330 -0.6 -3.5 AI-2E family transporter YdiK compare
DZA65_RS19195 -0.6 -1.4 leu operon leader peptide compare
DZA65_RS02475 -0.6 -2.5 5-formyltetrahydrofolate cyclo-ligase compare
DZA65_RS20920 -0.6 -4.9 glucose-1-phosphate adenylyltransferase compare
DZA65_RS19270 -0.6 -4.2 acetolactate synthase large subunit compare
DZA65_RS01215 -0.6 -4.9 phosphomethylpyrimidine synthase ThiC compare
DZA65_RS05885 -0.6 -2.9 transcriptional regulator NrdR compare
DZA65_RS06900 -0.6 -0.7 colicin uptake protein TolR compare
DZA65_RS09375 -0.6 -1.3 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS07980 -0.6 -1.3 phosphonate C-P lyase system protein PhnL compare
DZA65_RS20825 -0.6 -3.6 Hsp33 family molecular chaperone HslO compare
DZA65_RS03635 -0.6 -3.0 sugar transferase compare
DZA65_RS10615 -0.6 -3.2 non-heme ferritin compare
DZA65_RS16885 -0.6 -2.7 pyridoxine 5'-phosphate synthase compare
DZA65_RS02300 -0.6 -1.1 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS07315 -0.6 -1.8 transposase compare
DZA65_RS01195 -0.5 -2.5 thiazole synthase compare
DZA65_RS04630 -0.5 -2.2 ATP-binding protein compare
DZA65_RS19265 -0.5 -1.9 ilvB operon leader peptide IvbL compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Glycerol in Dickeya dianthicola ME23

For carbon source Glycerol across organisms