Experiment setATCH245 for Dickeya dianthicola ME23

Compare to:

PDB

200 most important genes:

  gene name fitness t score description  
DZA65_RS21420 -3.5 -18.9 glutamate racemase compare
DZA65_RS05310 -3.5 -10.3 thymidylate synthase compare
DZA65_RS22640 -3.1 -8.6 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS10915 -3.0 -8.8 septation protein A compare
DZA65_RS13750 -2.8 -14.9 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS10945 -2.8 -13.3 tryptophan synthase subunit beta compare
DZA65_RS10940 -2.7 -11.3 tryptophan synthase subunit alpha compare
DZA65_RS13755 -2.7 -9.9 glucan biosynthesis protein G compare
DZA65_RS10955 -2.7 -7.6 anthranilate phosphoribosyltransferase compare
DZA65_RS22335 -2.6 -20.4 low affinity potassium transporter Kup compare
DZA65_RS10960 -2.5 -3.6 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS16090 -2.5 -3.3 sulfurtransferase TusE compare
DZA65_RS00800 -2.4 -4.1 O-antigen ligase family protein compare
DZA65_RS15380 -2.3 -8.6 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS10965 -2.2 -12.4 anthranilate synthase component 1 compare
DZA65_RS22210 -2.2 -12.4 nitrogen regulation protein NR(I) compare
DZA65_RS22635 -2.2 -4.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS19655 -2.1 -3.0 adenylosuccinate synthase compare
DZA65_RS11435 -2.0 -5.3 redox-regulated ATPase YchF compare
DZA65_RS16610 -2.0 -11.9 IMP dehydrogenase compare
DZA65_RS06895 -1.9 -5.5 Tol-Pal system protein TolQ compare
DZA65_RS21790 -1.9 -3.9 sulfurtransferase TusA compare
DZA65_RS09990 -1.8 -3.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS05445 -1.8 -9.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DZA65_RS02490 -1.8 -9.5 phosphoserine phosphatase compare
DZA65_RS10950 -1.7 -8.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS01510 -1.7 -6.8 RNA polymerase factor sigma-54 compare
DZA65_RS13085 -1.7 -5.1 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS20555 -1.7 -4.0 sulfurtransferase complex subunit TusD compare
DZA65_RS03405 -1.7 -2.2 tRNA-Leu compare
DZA65_RS19540 -1.6 -8.1 phosphoglycerate dehydrogenase compare
DZA65_RS21090 -1.6 -1.7 tyrosine recombinase XerC compare
DZA65_RS16715 -1.5 -2.1 Fe-S cluster assembly scaffold IscU compare
DZA65_RS20355 -1.5 -5.1 Trk system potassium transporter TrkA compare
DZA65_RS03255 -1.5 -2.4 polyribonucleotide nucleotidyltransferase compare
DZA65_RS13110 -1.5 -2.5 DUF1289 domain-containing protein compare
DZA65_RS20550 -1.5 -3.8 sulfurtransferase complex subunit TusC compare
DZA65_RS03230 -1.5 -3.0 transcription termination/antitermination protein NusA compare
DZA65_RS12770 -1.5 -3.8 acid resistance repetitive basic protein Asr compare
DZA65_RS18650 -1.5 -3.1 alanine racemase compare
DZA65_RS15990 -1.4 -4.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS16635 -1.4 -2.8 outer membrane protein assembly factor BamB compare
DZA65_RS20775 -1.4 -2.4 DUF2531 family protein compare
DZA65_RS19745 -1.4 -6.8 GDP-L-fucose synthase compare
DZA65_RS11865 -1.4 -4.2 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS06900 -1.4 -1.6 colicin uptake protein TolR compare
DZA65_RS00735 -1.4 -6.0 orotate phosphoribosyltransferase compare
DZA65_RS01525 -1.4 -3.3 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS16045 -1.4 -5.8 polyphosphate kinase 1 compare
DZA65_RS19720 -1.4 -10.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS16370 -1.4 -1.8 hypothetical protein compare
DZA65_RS20545 -1.3 -3.3 sulfurtransferase complex subunit TusB compare
DZA65_RS22705 -1.3 -4.4 membrane protein insertion efficiency factor YidD compare
DZA65_RS22970 -1.3 -2.9 protein MgtS compare
DZA65_RS15340 -1.3 -9.3 colicin V production protein compare
DZA65_RS19515 -1.3 -7.5 non-canonical purine NTP phosphatase compare
DZA65_RS19730 -1.2 -9.0 GDP-mannose 4,6-dehydratase compare
DZA65_RS22195 -1.2 -6.4 ribosome-dependent GTPase TypA compare
DZA65_RS13880 -1.2 -4.8 flagellar export chaperone FliS compare
DZA65_RS16885 -1.2 -3.9 pyridoxine 5'-phosphate synthase compare
DZA65_RS15995 -1.2 -6.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS10165 -1.2 -6.0 DUF496 family protein compare
DZA65_RS12955 -1.2 -5.3 peptide ABC transporter substrate-binding protein SapA compare
DZA65_RS17245 -1.1 -4.4 tRNA-Asp compare
DZA65_RS19160 -1.1 -2.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS06020 -1.1 -5.7 endopeptidase La compare
DZA65_RS00035 -1.1 -9.1 oligopeptidase A compare
DZA65_RS00360 -1.1 -5.6 MarR family transcriptional regulator compare
DZA65_RS15370 -1.1 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS11120 -1.1 -5.7 mannose-6-phosphate isomerase compare
DZA65_RS01495 -1.1 -5.2 RNase adapter RapZ compare
DZA65_RS16710 -1.1 -2.8 iron-sulfur cluster assembly protein IscA compare
DZA65_RS19755 -1.1 -6.9 glycosyltransferase compare
DZA65_RS00790 -1.1 -1.7 glycosyltransferase family 4 protein compare
DZA65_RS09910 -1.1 -3.5 thioredoxin-disulfide reductase compare
DZA65_RS01350 -1.0 -2.4 DNA-binding transcriptional regulator Fis compare
DZA65_RS13710 -1.0 -7.4 dihydroorotase compare
DZA65_RS06745 -1.0 -7.3 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DZA65_RS19685 -1.0 -2.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS16705 -1.0 -3.3 co-chaperone HscB compare
DZA65_RS20805 -1.0 -1.7 intracellular growth attenuator family protein compare
DZA65_RS15520 -1.0 -5.7 tRNA-Arg compare
DZA65_RS20875 -1.0 -2.8 Fe-S biogenesis protein NfuA compare
DZA65_RS01970 -1.0 -7.4 aspartate carbamoyltransferase compare
DZA65_RS11395 -1.0 -1.9 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS13030 -1.0 -6.7 orotidine-5'-phosphate decarboxylase compare
DZA65_RS12975 -1.0 -5.7 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS13390 -1.0 -5.1 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS19750 -1.0 -5.9 hypothetical protein compare
DZA65_RS19380 -1.0 -7.6 carbamoyl-phosphate synthase large subunit compare
DZA65_RS01500 -1.0 -4.7 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS21565 -1.0 -6.6 agmatine deiminase compare
DZA65_RS13570 -1.0 -3.6 glycine zipper 2TM domain-containing protein compare
DZA65_RS07170 -1.0 -4.6 UTP--glucose-1-phosphate uridylyltransferase compare
DZA65_RS02505 -1.0 -2.4 peptide chain release factor 3 compare
DZA65_RS12760 -1.0 -6.8 two-component system response regulator RstA compare
DZA65_RS21050 -1.0 -2.4 hypothetical protein compare
DZA65_RS20220 -1.0 -6.5 glucose-6-phosphate isomerase compare
DZA65_RS21610 -0.9 -5.2 envelope stress response regulator transcription factor CpxR compare
DZA65_RS11145 -0.9 -5.4 ROK family transcriptional regulator compare
DZA65_RS10485 -0.9 -3.1 membrane protein compare
DZA65_RS11925 -0.9 -1.1 DNA-damage-inducible protein J compare
DZA65_RS19385 -0.9 -6.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS19725 -0.9 -7.7 phosphomannomutase/phosphoglucomutase compare
DZA65_RS17415 -0.9 -1.7 tRNA-Arg compare
DZA65_RS21445 -0.9 -3.1 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS06470 -0.9 -4.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS15335 -0.9 -7.3 amidophosphoribosyltransferase compare
DZA65_RS07665 -0.9 -3.1 AlpA family transcriptional regulator compare
DZA65_RS06820 -0.9 -2.3 citrate synthase compare
DZA65_RS18020 -0.9 -5.8 RNA polymerase sigma factor RpoS compare
DZA65_RS03635 -0.9 -4.9 sugar transferase compare
DZA65_RS06510 -0.9 -0.9 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS22290 -0.9 -7.2 substrate-binding domain-containing protein compare
DZA65_RS22410 -0.9 -2.5 F0F1 ATP synthase subunit epsilon compare
DZA65_RS06685 -0.8 -6.8 asparagine synthase B compare
DZA65_RS18080 -0.8 -2.3 phosphoadenylyl-sulfate reductase compare
DZA65_RS05490 -0.8 -5.1 sigma E protease regulator RseP compare
DZA65_RS12765 -0.8 -6.5 two-component system sensor histidine kinase RstB compare
DZA65_RS13875 -0.8 -6.1 flagellar filament capping protein FliD compare
DZA65_RS20835 -0.8 -4.3 two-component system sensor histidine kinase EnvZ compare
DZA65_RS16830 -0.8 -7.3 phosphoribosylformylglycinamidine synthase compare
DZA65_RS19740 -0.8 -4.2 ABC transporter ATP-binding protein compare
DZA65_RS21495 -0.8 -4.0 cell division protein FtsN compare
DZA65_RS19630 -0.8 -5.0 glutathione synthase compare
DZA65_RS21615 -0.8 -2.8 envelope stress sensor histidine kinase CpxA compare
DZA65_RS22845 -0.8 -2.5 hypothetical protein compare
DZA65_RS04730 -0.8 -2.1 hypothetical protein compare
DZA65_RS12505 -0.8 -3.9 carboxy terminal-processing peptidase compare
DZA65_RS22240 -0.8 -5.3 thiol:disulfide interchange protein DsbA compare
DZA65_RS00845 -0.8 -1.2 protein-export chaperone SecB compare
DZA65_RS06420 -0.8 -5.3 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS11020 -0.8 -5.3 HTH-type transcriptional regulator CysB compare
DZA65_RS01260 -0.8 -6.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS17400 -0.8 -3.7 glutamate--cysteine ligase compare
DZA65_RS20840 -0.8 -2.6 two-component system response regulator OmpR compare
DZA65_RS05840 -0.8 -1.7 peroxiredoxin C compare
DZA65_RS20970 -0.8 -4.9 gluconate operon transcriptional repressor GntR compare
DZA65_RS03670 -0.8 -3.1 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS22005 -0.7 -4.6 inorganic phosphate transporter PitA compare
DZA65_RS19680 -0.7 -3.9 RNA chaperone Hfq compare
DZA65_RS19405 -0.7 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DZA65_RS10980 -0.7 -2.2 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS13450 -0.7 -6.0 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS19670 -0.7 -2.5 FtsH protease activity modulator HflK compare
DZA65_RS21570 -0.7 -4.9 N-carbamoylputrescine amidase compare
DZA65_RS01365 -0.7 -5.1 sodium/pantothenate symporter compare
DZA65_RS02060 -0.7 -2.8 leucyl aminopeptidase compare
DZA65_RS22205 -0.7 -4.8 nitrogen regulation protein NR(II) compare
DZA65_RS04215 -0.7 -2.4 SsrA-binding protein SmpB compare
DZA65_RS13465 -0.7 -5.4 L,D-transpeptidase compare
DZA65_RS11690 -0.7 -2.0 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS22985 -0.7 -1.7 hypothetical protein compare
DZA65_RS18320 -0.7 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS01255 -0.7 -4.7 phosphoribosylamine--glycine ligase compare
DZA65_RS19735 -0.7 -2.4 ABC transporter permease compare
DZA65_RS05900 -0.7 -1.4 transcription antitermination factor NusB compare
DZA65_RS12945 -0.7 -2.6 phage shock protein PspA compare
DZA65_RS00795 -0.7 -4.3 glycosyltransferase family 9 protein compare
DZA65_RS02095 -0.7 -0.9 helix-turn-helix transcriptional regulator compare
DZA65_RS03210 -0.7 -1.3 preprotein translocase subunit SecG compare
DZA65_RS08800 -0.7 -4.1 helix-turn-helix transcriptional regulator compare
DZA65_RS17100 -0.7 -1.8 vitamin B12 ABC transporter substrate-binding protein BtuF compare
DZA65_RS17115 -0.7 -2.2 bifunctional glycosyl transferase/transpeptidase compare
DZA65_RS01405 -0.7 -5.5 RNase E specificity factor CsrD compare
DZA65_RS19880 -0.7 -2.6 MarR family transcriptional regulator compare
DZA65_RS02300 -0.7 -1.7 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS12775 -0.6 -2.3 serine protease compare
DZA65_RS03705 -0.6 -3.1 hypothetical protein compare
DZA65_RS09395 -0.6 -1.4 plasmid stabilization protein compare
DZA65_RS21130 -0.6 -3.9 uroporphyrinogen-III C-methyltransferase compare
DZA65_RS22695 -0.6 -3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS03265 -0.6 -1.2 protein YrbN compare
DZA65_RS00740 -0.6 -1.4 nucleoid occlusion factor SlmA compare
DZA65_RS06660 -0.6 -1.5 tRNA-Met compare
DZA65_RS00420 -0.6 -3.9 FtsX-like permease family protein compare
DZA65_RS07915 -0.6 -1.9 aspartate/glutamate racemase family protein compare
DZA65_RS18600 -0.6 -0.9 DUF1330 domain-containing protein compare
DZA65_RS03355 -0.6 -1.8 hypothetical protein compare
DZA65_RS21475 -0.6 -1.4 met regulon transcriptional regulator MetJ compare
DZA65_RS06885 -0.6 -2.1 cyd operon protein YbgE compare
DZA65_RS15160 -0.6 -3.5 DUF2644 domain-containing protein compare
DZA65_RS07180 -0.6 -3.6 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS03470 -0.6 -2.6 membrane protein compare
DZA65_RS19290 -0.6 -1.5 hypothetical protein compare
DZA65_RS04230 -0.6 -3.5 outer membrane protein assembly factor BamE compare
DZA65_RS15135 -0.6 -1.6 hypothetical protein compare
DZA65_RS20795 -0.6 -4.1 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
DZA65_RS16810 -0.6 -4.0 nitrogen regulatory protein P-II compare
DZA65_RS18405 -0.6 -4.5 ribonuclease R compare
DZA65_RS01635 -0.6 -5.4 glutamate synthase large subunit compare
DZA65_RS09570 -0.6 -1.9 1-phosphofructokinase compare
DZA65_RS13700 -0.6 -2.4 ribonuclease E compare
DZA65_RS13240 -0.6 -0.9 LysR family transcriptional regulator compare
DZA65_RS04285 -0.6 -1.6 RpoE-regulated lipoprotein compare
DZA65_RS10060 -0.6 -2.6 ATP phosphoribosyltransferase compare
DZA65_RS10055 -0.6 -2.7 histidinol dehydrogenase compare
DZA65_RS01680 -0.6 -3.7 penicillin-binding protein activator compare
DZA65_RS18270 -0.6 -1.6 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DZA65_RS22295 -0.6 -4.6 ribokinase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in control experiments

For control kanamycin across organisms