Experiment setATCH243 for Dickeya dianthicola ME23

Compare to:

PDB

200 most detrimental genes:

  gene name fitness t score description  
DZA65_RS19495 +1.1 2.4 two-component system response regulator ArcA compare
DZA65_RS18785 +1.0 2.3 hypothetical protein compare
DZA65_RS11275 +1.0 2.6 hypothetical protein compare
DZA65_RS09095 +0.9 3.4 hypothetical protein compare
DZA65_RS10550 +0.9 3.5 murein DD-endopeptidase MepM compare
DZA65_RS21115 +0.9 6.2 class I adenylate cyclase compare
DZA65_RS05165 +0.8 1.5 hypothetical protein compare
DZA65_RS18200 +0.8 2.2 hypothetical protein compare
DZA65_RS12230 +0.8 2.1 HrpP protein compare
DZA65_RS09460 +0.8 2.7 YejL family protein compare
DZA65_RS20965 +0.7 2.0 gluconokinase compare
DZA65_RS17255 +0.7 1.7 ribonuclease HI compare
DZA65_RS15200 +0.7 1.8 hypothetical protein compare
DZA65_RS07440 +0.7 2.9 IS5 family transposase compare
DZA65_RS05655 +0.6 2.0 hypothetical protein compare
DZA65_RS14875 +0.6 1.5 hydrogenase maturation nickel metallochaperone HypA compare
DZA65_RS17015 +0.6 1.8 PTS lactose/cellobiose transporter subunit IIA compare
DZA65_RS16730 +0.6 2.8 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ compare
DZA65_RS00410 +0.6 4.7 helix-turn-helix transcriptional regulator compare
DZA65_RS11900 +0.6 1.2 hypothetical protein compare
DZA65_RS16240 +0.6 2.1 transporter substrate-binding domain-containing protein compare
DZA65_RS08425 +0.6 1.8 malonate decarboxylase acyl carrier protein compare
DZA65_RS22835 +0.5 2.5 hypothetical protein compare
DZA65_RS13320 +0.5 1.5 hotdog fold thioesterase compare
DZA65_RS01015 +0.5 1.9 helix-turn-helix transcriptional regulator compare
DZA65_RS19645 +0.5 4.6 class 1 fructose-bisphosphatase compare
DZA65_RS13505 +0.5 2.5 hypothetical protein compare
DZA65_RS18155 +0.5 4.2 two-component sensor histidine kinase BarA compare
DZA65_RS20870 +0.5 1.5 DNA utilization protein GntX compare
DZA65_RS15605 +0.5 1.7 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
DZA65_RS11530 +0.5 1.8 hemagglutinin compare
DZA65_RS00430 +0.5 4.3 histidine kinase compare
DZA65_RS17270 +0.5 4.4 murein transglycosylase D compare
DZA65_RS05975 +0.5 0.9 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS04895 +0.5 2.3 DUF29 domain-containing protein compare
DZA65_RS22230 +0.5 1.6 YihA family ribosome biogenesis GTP-binding protein compare
DZA65_RS06750 +0.5 1.5 EamA family transporter compare
DZA65_RS02615 +0.5 3.7 GntR family transcriptional regulator compare
DZA65_RS06730 +0.5 1.7 LexA regulated protein compare
DZA65_RS08330 +0.4 2.0 ABC transporter permease subunit compare
DZA65_RS14130 +0.4 2.5 holin compare
DZA65_RS00415 +0.4 3.3 ABC transporter ATP-binding protein compare
DZA65_RS18525 +0.4 1.9 PTS sugar transporter subunit IIB compare
DZA65_RS08925 +0.4 1.8 molybdopterin-synthase adenylyltransferase MoeB compare
DZA65_RS14295 +0.4 1.0 DUF2594 family protein compare
DZA65_RS16125 +0.4 2.8 YccF domain-containing protein compare
DZA65_RS19600 +0.4 2.6 hypothetical protein compare
DZA65_RS22965 +0.4 0.8 hypothetical protein compare
DZA65_RS12385 +0.4 1.9 ABC transporter permease compare
DZA65_RS01020 +0.4 1.2 YeeE/YedE family protein compare
DZA65_RS16785 +0.4 1.5 pectate lyase compare
DZA65_RS04625 +0.4 1.4 IS4 family transposase compare
DZA65_RS06855 +0.4 2.5 ADP-forming succinate--CoA ligase subunit beta compare
DZA65_RS00970 +0.4 1.8 twin-arginine translocase subunit TatA compare
DZA65_RS18030 +0.4 2.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
DZA65_RS04555 +0.4 2.2 TIGR00645 family protein compare
DZA65_RS01670 +0.4 2.0 DnaA initiator-associating protein DiaA compare
DZA65_RS15620 +0.4 1.4 alpha/beta hydrolase compare
DZA65_RS07150 +0.4 2.2 hypothetical protein compare
DZA65_RS06300 +0.4 2.1 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase compare
DZA65_RS07000 +0.4 1.8 molybdenum-dependent transcriptional regulator compare
DZA65_RS16370 +0.4 1.0 hypothetical protein compare
DZA65_RS17845 +0.4 1.3 oxalurate catabolism protein HpxZ compare
DZA65_RS13850 +0.4 3.2 Gfo/Idh/MocA family oxidoreductase compare
DZA65_RS08595 +0.4 1.5 type VI secretion system-associated protein TagO compare
DZA65_RS02945 +0.4 1.2 transcriptional regulator ExuR compare
DZA65_RS04590 +0.4 2.5 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS00425 +0.4 2.8 sigma-54-dependent Fis family transcriptional regulator compare
DZA65_RS22795 +0.4 1.7 hypothetical protein compare
DZA65_RS17880 +0.4 1.2 glycine betaine/L-proline ABC transporter permease ProW compare
DZA65_RS12345 +0.4 1.9 SDR family oxidoreductase compare
DZA65_RS04875 +0.4 2.1 hypothetical protein compare
DZA65_RS03475 +0.4 1.9 flavodoxin FldB compare
DZA65_RS17625 +0.4 1.6 acyl carrier protein compare
DZA65_RS05550 +0.4 2.1 Rho-binding antiterminator compare
DZA65_RS21010 +0.4 2.4 glycerol-3-phosphate dehydrogenase subunit GlpB compare
DZA65_RS06525 +0.4 2.3 twin-arginine translocase subunit TatE compare
DZA65_RS18105 +0.4 1.2 6-carboxytetrahydropterin synthase QueD compare
DZA65_RS02625 +0.4 2.9 amidase compare
DZA65_RS01485 +0.4 1.7 nucleoside diphosphate kinase regulator compare
DZA65_RS04700 +0.4 0.9 transposase compare
DZA65_RS07875 +0.4 2.7 glutamate/aspartate:proton symporter GltP compare
DZA65_RS10220 +0.4 2.2 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
DZA65_RS21975 +0.4 2.0 DUF1471 domain-containing protein compare
DZA65_RS05740 +0.4 2.0 M20/M25/M40 family metallo-hydrolase compare
DZA65_RS02560 +0.4 1.6 iron ABC transporter permease compare
DZA65_RS12270 +0.4 1.7 hypothetical protein compare
DZA65_RS16065 +0.4 2.2 universal stress protein compare
DZA65_RS06490 +0.4 1.7 YpfN family protein compare
DZA65_RS10840 +0.3 2.3 thymidine kinase compare
DZA65_RS21745 +0.3 1.7 aspartate 1-decarboxylase autocleavage activator PanM compare
DZA65_RS14345 +0.3 1.0 AlpA family transcriptional regulator compare
DZA65_RS05090 +0.3 1.5 hypothetical protein compare
DZA65_RS19300 +0.3 1.4 Hcp family type VI secretion system effector compare
DZA65_RS17175 +0.3 2.0 ABC transporter ATP-binding protein compare
DZA65_RS02495 +0.3 2.4 YtjB family periplasmic protein compare
DZA65_RS15610 +0.3 1.3 hotdog fold thioesterase compare
DZA65_RS08540 +0.3 1.4 type VI secretion system contractile sheath small subunit compare
DZA65_RS03180 +0.3 2.3 transcription elongation factor GreA compare
DZA65_RS09015 +0.3 0.7 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS02810 +0.3 1.2 transcriptional regulator compare
DZA65_RS21035 +0.3 1.7 homoserine/homoserine lactone efflux protein compare
DZA65_RS16850 +0.3 1.3 hypothetical protein compare
DZA65_RS19910 +0.3 1.4 nitrogen fixation protein NifQ compare
DZA65_RS03015 +0.3 2.3 transcriptional regulator UhpA compare
DZA65_RS21110 +0.3 1.3 iron donor protein CyaY compare
DZA65_RS08865 +0.3 1.9 hypothetical protein compare
DZA65_RS17195 +0.3 1.2 hypothetical protein compare
DZA65_RS08335 +0.3 1.5 hypothetical protein compare
DZA65_RS07090 +0.3 0.9 protein-tyrosine-phosphatase compare
DZA65_RS21845 +0.3 2.7 insulinase family protein compare
DZA65_RS08895 +0.3 1.3 DUF3168 domain-containing protein compare
DZA65_RS09270 +0.3 1.1 hypothetical protein compare
DZA65_RS19850 +0.3 1.7 ABC transporter substrate-binding protein compare
DZA65_RS21690 +0.3 1.9 chemotaxis protein compare
DZA65_RS05325 +0.3 1.3 YgdB family protein compare
DZA65_RS07010 +0.3 1.8 molybdate ABC transporter substrate-binding protein compare
DZA65_RS14310 +0.3 0.8 LysR family transcriptional regulator compare
DZA65_RS01900 +0.3 1.3 ABC transporter permease compare
DZA65_RS05825 +0.3 2.3 cobalamin-independent methionine synthase II family protein compare
DZA65_RS11290 +0.3 1.9 myo-inositol-1-monophosphatase compare
DZA65_RS16825 +0.3 2.6 HAMP domain-containing histidine kinase compare
DZA65_RS13235 +0.3 1.3 AraC family transcriptional regulator compare
DZA65_RS08275 +0.3 1.5 MotA/TolQ/ExbB proton channel family protein compare
DZA65_RS12660 +0.3 0.7 phage tail assembly protein compare
DZA65_RS07015 +0.3 2.3 molybdate ABC transporter permease subunit compare
DZA65_RS14820 +0.3 1.6 formate dehydrogenase cytochrome b556 subunit compare
DZA65_RS22225 +0.3 0.8 Der GTPase-activating protein YihI compare
DZA65_RS08680 +0.3 2.0 CidA/LrgA family protein compare
DZA65_RS00515 +0.3 1.8 LuxR family transcriptional regulator compare
DZA65_RS12255 +0.3 1.5 type III secretion system export apparatus subunit SctU compare
DZA65_RS08045 +0.3 2.2 CRISPR-associated protein Cas4 compare
DZA65_RS02465 +0.3 1.2 cell division protein ZapA compare
DZA65_RS16815 +0.3 2.6 two-component system response regulator GlrR compare
DZA65_RS11380 +0.3 2.2 DUF1471 domain-containing protein compare
DZA65_RS19315 +0.3 1.4 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA compare
DZA65_RS02185 +0.3 1.5 DUF1778 domain-containing protein compare
DZA65_RS00995 +0.3 2.4 transcription/translation regulatory transformer protein RfaH compare
DZA65_RS11355 +0.3 1.5 methylated-DNA--[protein]-cysteine S-methyltransferase compare
DZA65_RS10320 +0.3 1.1 molecular chaperone compare
DZA65_RS21990 +0.3 2.0 sugar-phosphatase compare
DZA65_RS03305 +0.3 1.7 deoxyribose-phosphate aldolase compare
DZA65_RS04270 +0.3 1.5 YaiI/YqxD family protein compare
DZA65_RS12380 +0.3 2.3 DeoR/GlpR transcriptional regulator compare
DZA65_RS03345 +0.3 0.8 cysteine synthase family protein compare
DZA65_RS15075 +0.3 1.7 DUF2635 domain-containing protein compare
DZA65_RS04980 +0.3 1.8 integrating conjugative element protein compare
DZA65_RS13230 +0.3 0.9 DUF1471 domain-containing protein compare
DZA65_RS13860 +0.3 2.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DZA65_RS19890 +0.3 2.3 amidohydrolase compare
DZA65_RS20065 +0.3 1.7 HlyD family efflux transporter periplasmic adaptor subunit compare
DZA65_RS03570 +0.3 1.3 hypothetical protein compare
DZA65_RS01305 +0.3 1.9 amino acid ABC transporter permease compare
DZA65_RS11990 +0.3 1.2 tyrosine-type recombinase/integrase compare
DZA65_RS15275 +0.3 1.2 hypothetical protein compare
DZA65_RS12940 +0.3 1.3 envelope stress response membrane protein PspB compare
DZA65_RS11540 +0.3 1.8 D-amino acid dehydrogenase compare
DZA65_RS12235 +0.3 1.8 YscQ/HrcQ family type III secretion apparatus protein compare
DZA65_RS00565 +0.3 1.4 hypothetical protein compare
DZA65_RS17775 +0.3 1.5 acireductone synthase compare
DZA65_RS00935 +0.3 2.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
DZA65_RS07840 +0.3 1.3 hydrogenase 4 membrane subunit compare
DZA65_RS03185 +0.3 0.5 ribosome assembly RNA-binding protein YhbY compare
DZA65_RS01180 +0.3 0.7 DUF1127 domain-containing protein compare
DZA65_RS14170 +0.3 1.7 4'-phosphopantetheinyl transferase superfamily protein compare
DZA65_RS04260 +0.3 2.2 GDP-mannose pyrophosphatase NudK compare
DZA65_RS00650 +0.3 1.8 hypothetical protein compare
DZA65_RS20140 +0.3 1.6 hypothetical protein compare
DZA65_RS04205 +0.3 1.6 zinc ribbon domain-containing protein compare
DZA65_RS17215 +0.3 2.0 polyamine aminopropyltransferase compare
DZA65_RS00625 +0.3 1.4 acyltransferase compare
DZA65_RS15900 +0.3 1.1 MarR family transcriptional regulator compare
DZA65_RS01030 +0.3 1.3 acetyl-CoA C-acyltransferase FadA compare
DZA65_RS11710 +0.3 1.8 cupin domain-containing protein compare
DZA65_RS08085 +0.3 2.1 type III PLP-dependent enzyme compare
DZA65_RS06600 +0.3 1.3 amino acid ABC transporter ATP-binding protein compare
DZA65_RS12375 +0.3 1.6 histidinol-phosphatase compare
DZA65_RS19265 +0.3 1.5 ilvB operon leader peptide IvbL compare
DZA65_RS17220 +0.3 2.1 adenosylmethionine decarboxylase compare
DZA65_RS03315 +0.3 1.8 phosphopentomutase compare
DZA65_RS07060 +0.3 2.0 uridine kinase compare
DZA65_RS13000 +0.3 1.9 aldo/keto reductase compare
DZA65_RS11560 +0.3 1.7 hypothetical protein compare
DZA65_RS04730 +0.3 1.3 hypothetical protein compare
DZA65_RS22940 +0.3 1.2 hypothetical protein compare
DZA65_RS00730 +0.3 1.8 ribonuclease PH compare
DZA65_RS05995 +0.3 1.8 hypothetical protein compare
DZA65_RS16475 +0.3 1.1 hypothetical protein compare
DZA65_RS16790 +0.3 2.0 polysaccharide lyase compare
DZA65_RS14095 +0.3 1.8 flagellar transcriptional regulator FlhD compare
DZA65_RS15205 +0.3 1.7 hypothetical protein compare
DZA65_RS19960 +0.3 1.4 homocitrate synthase compare
DZA65_RS14485 +0.3 1.1 hypothetical protein compare
DZA65_RS06360 +0.2 0.8 ABC transporter ATP-binding protein compare
DZA65_RS05345 +0.2 1.9 N-acetylmuramoyl-L-alanine amidase compare
DZA65_RS12675 +0.2 1.6 tail assembly protein compare
DZA65_RS10570 +0.2 1.8 pyruvate kinase compare
DZA65_RS10680 +0.2 0.7 phage holin, lambda family compare
DZA65_RS04685 +0.2 1.4 hypothetical protein compare
DZA65_RS19320 +0.2 1.6 co-chaperone DjlA compare


Specific Phenotypes

For 1 genes in this experiment

For control kanamycin in Dickeya dianthicola ME23

For control kanamycin across organisms