Experiment setATCH242 for Dickeya dianthicola ME23

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DZA65_RS04310 -3.2 -10.8 Dyp-type peroxidase compare
DZA65_RS09240 -2.2 -2.2 biotin carboxyl carrier domain-containing protein compare
DZA65_RS16090 -2.1 -3.1 sulfurtransferase TusE compare
DZA65_RS01005 -2.0 -4.5 NAD(P)H-flavin reductase compare
DZA65_RS21790 -2.0 -3.6 sulfurtransferase TusA compare
DZA65_RS03230 -1.9 -3.3 transcription termination/antitermination protein NusA compare
DZA65_RS03405 -1.6 -2.4 tRNA-Leu compare
DZA65_RS03605 -1.6 -2.6 cation efflux system protein CusF compare
DZA65_RS01370 -1.6 -2.3 YhdT family protein compare
DZA65_RS16715 -1.6 -2.1 Fe-S cluster assembly scaffold IscU compare
DZA65_RS13755 -1.5 -7.0 glucan biosynthesis protein G compare
DZA65_RS21090 -1.5 -2.1 tyrosine recombinase XerC compare
DZA65_RS00800 -1.4 -5.2 O-antigen ligase family protein compare
DZA65_RS11865 -1.4 -4.4 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS13750 -1.4 -9.9 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS20555 -1.4 -3.2 sulfurtransferase complex subunit TusD compare
DZA65_RS12130 -1.4 -3.9 hypothetical protein compare
DZA65_RS03130 -1.4 -6.1 malate dehydrogenase compare
DZA65_RS03210 -1.4 -1.2 preprotein translocase subunit SecG compare
DZA65_RS05975 -1.3 -1.9 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS13085 -1.3 -3.8 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS16370 -1.3 -2.1 hypothetical protein compare
DZA65_RS16705 -1.3 -3.9 co-chaperone HscB compare
DZA65_RS20905 -1.3 -2.3 glycerol-3-phosphate dehydrogenase compare
DZA65_RS06510 -1.3 -1.8 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS03670 -1.3 -5.1 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS06900 -1.2 -2.5 colicin uptake protein TolR compare
DZA65_RS20550 -1.2 -2.8 sulfurtransferase complex subunit TusC compare
DZA65_RS21475 -1.1 -2.0 met regulon transcriptional regulator MetJ compare
DZA65_RS10915 -1.1 -4.0 septation protein A compare
DZA65_RS02505 -1.1 -2.3 peptide chain release factor 3 compare
DZA65_RS11830 -1.1 -4.7 DNA-binding transcriptional regulator KdgR compare
DZA65_RS21115 -1.0 -5.7 class I adenylate cyclase compare
DZA65_RS19685 -1.0 -1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS03465 -1.0 -3.2 FAD assembly factor SdhE compare
DZA65_RS12505 -1.0 -4.2 carboxy terminal-processing peptidase compare
DZA65_RS22410 -0.9 -2.6 F0F1 ATP synthase subunit epsilon compare
DZA65_RS21770 -0.9 -3.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
DZA65_RS18160 -0.9 -1.4 glycerate kinase compare
DZA65_RS07180 -0.9 -4.8 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS22195 -0.9 -5.4 ribosome-dependent GTPase TypA compare
DZA65_RS09395 -0.9 -2.1 plasmid stabilization protein compare
DZA65_RS15445 -0.9 -2.7 YfcL family protein compare
DZA65_RS13110 -0.9 -1.7 DUF1289 domain-containing protein compare
DZA65_RS02060 -0.9 -3.2 leucyl aminopeptidase compare
DZA65_RS16710 -0.9 -1.6 iron-sulfur cluster assembly protein IscA compare
DZA65_RS15370 -0.9 -3.3 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS06855 -0.9 -4.0 ADP-forming succinate--CoA ligase subunit beta compare
DZA65_RS05840 -0.9 -1.8 peroxiredoxin C compare
DZA65_RS12995 -0.9 -3.5 exoribonuclease II compare
DZA65_RS01350 -0.9 -1.8 DNA-binding transcriptional regulator Fis compare
DZA65_RS22640 -0.9 -4.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS02945 -0.9 -1.8 transcriptional regulator ExuR compare
DZA65_RS05965 -0.9 -2.9 protoheme IX farnesyltransferase compare
DZA65_RS12020 -0.9 -2.8 ribonuclease toxin immunity protein CdiI compare
DZA65_RS05980 -0.8 -4.1 cytochrome o ubiquinol oxidase subunit I compare
DZA65_RS10485 -0.8 -2.6 membrane protein compare
DZA65_RS04730 -0.8 -2.3 hypothetical protein compare
DZA65_RS19665 -0.8 -2.5 protease modulator HflC compare
DZA65_RS22005 -0.8 -5.4 inorganic phosphate transporter PitA compare
DZA65_RS00420 -0.8 -4.2 FtsX-like permease family protein compare
DZA65_RS22635 -0.8 -2.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS13435 -0.8 -5.9 porin compare
DZA65_RS17400 -0.8 -4.1 glutamate--cysteine ligase compare
DZA65_RS12685 -0.8 -1.5 hypothetical protein compare
DZA65_RS12985 -0.8 -2.0 hypothetical protein compare
DZA65_RS10555 -0.8 -1.6 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS05855 -0.8 -4.1 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS06835 -0.8 -5.1 succinate dehydrogenase flavoprotein subunit compare
DZA65_RS16045 -0.8 -3.4 polyphosphate kinase 1 compare
DZA65_RS01430 -0.8 -3.2 ribonuclease G compare
DZA65_RS10050 -0.8 -2.6 histidinol-phosphate transaminase compare
DZA65_RS13135 -0.8 -2.0 YnhF family membrane protein compare
DZA65_RS04355 -0.8 -5.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS19670 -0.8 -2.9 FtsH protease activity modulator HflK compare
DZA65_RS21445 -0.8 -2.4 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS03265 -0.7 -1.2 protein YrbN compare
DZA65_RS04220 -0.7 -3.7 type II toxin-antitoxin system RatA family toxin compare
DZA65_RS19175 -0.7 -5.2 catabolite repressor/activator compare
DZA65_RS14145 -0.7 -2.0 hypothetical protein compare
DZA65_RS11900 -0.7 -1.1 hypothetical protein compare
DZA65_RS05985 -0.7 -2.4 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS04070 -0.7 -2.8 ogr/Delta-like zinc finger family protein compare
DZA65_RS14880 -0.7 -2.6 hydrogenase-2 assembly chaperone compare
DZA65_RS15280 -0.7 -2.9 acetate kinase compare
DZA65_RS06840 -0.7 -3.2 succinate dehydrogenase iron-sulfur subunit compare
DZA65_RS07055 -0.7 -3.4 iron-sulfur cluster carrier protein ApbC compare
DZA65_RS04700 -0.7 -1.4 transposase compare
DZA65_RS05165 -0.7 -0.9 hypothetical protein compare
DZA65_RS14355 -0.7 -2.0 TraR/DksA family transcriptional regulator compare
DZA65_RS03355 -0.7 -2.0 hypothetical protein compare
DZA65_RS16635 -0.7 -1.5 outer membrane protein assembly factor BamB compare
DZA65_RS15285 -0.7 -3.0 phosphate acetyltransferase compare
DZA65_RS13120 -0.7 -2.2 ribonuclease T compare
DZA65_RS13570 -0.7 -2.7 glycine zipper 2TM domain-containing protein compare
DZA65_RS00810 -0.7 -1.8 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS06895 -0.6 -2.4 Tol-Pal system protein TolQ compare
DZA65_RS08845 -0.6 -1.6 hypothetical protein compare
DZA65_RS08925 -0.6 -2.3 molybdopterin-synthase adenylyltransferase MoeB compare
DZA65_RS06825 -0.6 -3.9 succinate dehydrogenase cytochrome b556 subunit compare
DZA65_RS22145 -0.6 -1.1 DNA-directed RNA polymerase subunit omega compare
DZA65_RS06830 -0.6 -3.6 succinate dehydrogenase membrane anchor subunit compare
DZA65_RS21080 -0.6 -3.7 DNA helicase II compare
DZA65_RS15380 -0.6 -3.9 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS07635 -0.6 -1.6 TrbC/VirB2 family protein compare
DZA65_RS05310 -0.6 -4.0 thymidylate synthase compare
DZA65_RS05960 -0.6 -3.7 MFS transporter compare
DZA65_RS00740 -0.6 -1.4 nucleoid occlusion factor SlmA compare
DZA65_RS16245 -0.6 -1.4 amino acid ABC transporter permease compare
DZA65_RS00360 -0.6 -2.9 MarR family transcriptional regulator compare
DZA65_RS16910 -0.6 -3.3 elongation factor 4 compare
DZA65_RS02405 -0.6 -2.7 hypothetical protein compare
DZA65_RS19875 -0.6 -2.0 organic hydroperoxide resistance protein compare
DZA65_RS00790 -0.6 -1.3 glycosyltransferase family 4 protein compare
DZA65_RS18650 -0.6 -1.8 alanine racemase compare
DZA65_RS15100 -0.6 -2.2 hypothetical protein compare
DZA65_RS04420 -0.6 -4.1 fumarate hydratase compare
DZA65_RS03495 -0.6 -3.0 single-stranded-DNA-specific exonuclease RecJ compare
DZA65_RS18450 -0.6 -2.8 YggU family protein compare
DZA65_RS09415 -0.6 -1.9 hypothetical protein compare
DZA65_RS06040 -0.6 -2.9 7-cyano-7-deazaguanine synthase QueC compare
DZA65_RS19160 -0.6 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS21275 -0.6 -4.0 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS00970 -0.6 -2.2 twin-arginine translocase subunit TatA compare
DZA65_RS08010 -0.5 -2.8 hypothetical protein compare
DZA65_RS18920 -0.5 -2.0 D-threonate 4-phosphate dehydrogenase compare
DZA65_RS07460 -0.5 -2.2 SDR family oxidoreductase compare
DZA65_RS09910 -0.5 -2.1 thioredoxin-disulfide reductase compare
DZA65_RS01180 -0.5 -1.1 DUF1127 domain-containing protein compare
DZA65_RS13475 -0.5 -2.6 EAL domain-containing protein compare
DZA65_RS04795 -0.5 -1.8 hypothetical protein compare
DZA65_RS22210 -0.5 -3.7 nitrogen regulation protein NR(I) compare
DZA65_RS19975 -0.5 -1.4 nitrogen fixation protein NifX compare
DZA65_RS09990 -0.5 -1.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS22060 -0.5 -1.2 DUF1471 domain-containing protein compare
DZA65_RS13490 -0.5 -2.4 vitamin B12 ABC transporter ATP-binding protein BtuD compare
DZA65_RS10055 -0.5 -2.2 histidinol dehydrogenase compare
DZA65_RS05590 -0.5 -1.8 MarR family transcriptional regulator compare
DZA65_RS06335 -0.5 -1.4 DUF1778 domain-containing protein compare
DZA65_RS11435 -0.5 -1.7 redox-regulated ATPase YchF compare
DZA65_RS13040 -0.5 -1.4 LapA family protein compare
DZA65_RS12660 -0.5 -1.2 phage tail assembly protein compare
DZA65_RS18405 -0.5 -3.6 ribonuclease R compare
DZA65_RS04390 -0.5 -1.2 accessory factor UbiK family protein compare
DZA65_RS00885 -0.5 -2.7 uridine phosphorylase compare
DZA65_RS04315 -0.5 -2.6 cysteine synthase CysM compare
DZA65_RS09005 -0.5 -2.2 molybdenum cofactor biosynthesis protein B compare
DZA65_RS22695 -0.5 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS22360 -0.5 -3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS04535 -0.5 -3.3 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
DZA65_RS16885 -0.5 -1.9 pyridoxine 5'-phosphate synthase compare
DZA65_RS03470 -0.5 -1.8 membrane protein compare
DZA65_RS01560 -0.5 -3.2 phospholipid-binding protein MlaC compare
DZA65_RS17330 -0.5 -2.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DZA65_RS20355 -0.5 -2.0 Trk system potassium transporter TrkA compare
DZA65_RS12630 -0.5 -2.3 tail fiber protein compare
DZA65_RS20860 -0.5 -2.3 RNA-binding transcriptional accessory protein compare
DZA65_RS09025 -0.5 -3.2 iron ABC transporter substrate-binding protein compare
DZA65_RS01870 -0.5 -2.3 YhbP family protein compare
DZA65_RS19630 -0.5 -2.9 glutathione synthase compare
DZA65_RS19165 -0.5 -1.2 division/cell wall cluster transcriptional repressor MraZ compare
DZA65_RS02100 -0.4 -1.1 transcriptional regulator compare
DZA65_RS09570 -0.4 -1.4 1-phosphofructokinase compare
DZA65_RS05295 -0.4 -0.9 RNA pyrophosphohydrolase compare
DZA65_RS14350 -0.4 -1.7 DUF2857 domain-containing protein compare
DZA65_RS11525 -0.4 -1.4 hypothetical protein compare
DZA65_RS16155 -0.4 -2.8 NupC/NupG family nucleoside CNT transporter compare
DZA65_RS22480 -0.4 -2.3 acyl-CoA thioesterase compare
DZA65_RS17805 -0.4 -2.5 amino acid ABC transporter ATP-binding protein compare
DZA65_RS16380 -0.4 -1.8 hypothetical protein compare
DZA65_RS17875 -0.4 -1.8 glycine betaine/L-proline ABC transporter ATP-binding protein ProV compare
DZA65_RS18105 -0.4 -1.2 6-carboxytetrahydropterin synthase QueD compare
DZA65_RS12345 -0.4 -1.9 SDR family oxidoreductase compare
DZA65_RS06305 -0.4 -2.1 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
DZA65_RS10045 -0.4 -1.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS21715 -0.4 -1.9 L(+)-tartrate dehydratase subunit beta compare
DZA65_RS19475 -0.4 -2.0 threonine synthase compare
DZA65_RS14755 -0.4 -2.0 ABC transporter ATP-binding protein compare
DZA65_RS14395 -0.4 -0.8 EexN family lipoprotein compare
DZA65_RS09015 -0.4 -0.7 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS22450 -0.4 -1.8 acyl carrier protein compare
DZA65_RS00555 -0.4 -2.0 hypothetical protein compare
DZA65_RS13230 -0.4 -1.2 DUF1471 domain-containing protein compare
DZA65_RS08800 -0.4 -2.2 helix-turn-helix transcriptional regulator compare
DZA65_RS09830 -0.4 -2.5 arginine ABC transporter permease ArtM compare
DZA65_RS20670 -0.4 -1.2 helix-turn-helix transcriptional regulator compare
DZA65_RS02995 -0.4 -1.7 hypothetical protein compare
DZA65_RS05240 -0.4 -1.9 oxidative damage protection protein compare
DZA65_RS10305 -0.4 -1.1 ATP-binding protein compare
DZA65_RS07005 -0.4 -1.3 multidrug efflux pump-associated protein, AcrZ family compare
DZA65_RS22845 -0.4 -1.1 hypothetical protein compare
DZA65_RS10790 -0.4 -1.1 DUF1496 domain-containing protein compare
DZA65_RS16875 -0.4 -2.1 YfhL family 4Fe-4S dicluster ferredoxin compare
DZA65_RS11550 -0.4 -1.4 fatty acid metabolism transcriptional regulator FadR compare
DZA65_RS10030 -0.4 -1.0 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS21055 -0.4 -2.2 thioesterase family protein compare
DZA65_RS02930 -0.4 -2.0 DUF883 domain-containing protein compare
DZA65_RS17245 -0.4 -1.6 tRNA-Asp compare
DZA65_RS10060 -0.4 -1.9 ATP phosphoribosyltransferase compare
DZA65_RS07390 -0.4 -1.3 ATP-dependent helicase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in control experiments

For control kanamycin across organisms