Experiment setATCH242 for Dickeya dianthicola ME23

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
DZA65_RS08815 +0.8 2.1 type II toxin-antitoxin system CcdA family antitoxin compare
DZA65_RS19405 +0.8 1.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DZA65_RS09460 +0.7 2.3 YejL family protein compare
DZA65_RS18785 +0.7 1.6 hypothetical protein compare
DZA65_RS15200 +0.7 1.8 hypothetical protein compare
DZA65_RS18975 +0.7 1.3 helix-turn-helix transcriptional regulator compare
DZA65_RS11155 +0.7 2.7 DUF1283 family protein compare
DZA65_RS16785 +0.6 2.8 pectate lyase compare
DZA65_RS03525 +0.6 1.7 hypothetical protein compare
DZA65_RS01900 +0.6 2.9 ABC transporter permease compare
DZA65_RS14295 +0.6 1.6 DUF2594 family protein compare
DZA65_RS14415 +0.6 1.3 IS4 family transposase compare
DZA65_RS14310 +0.6 1.4 LysR family transcriptional regulator compare
DZA65_RS17035 +0.5 1.3 helix-turn-helix transcriptional regulator compare
DZA65_RS13935 +0.5 3.1 flagellar motor switch protein FliN compare
DZA65_RS16670 +0.5 1.7 nucleoside-diphosphate kinase compare
DZA65_RS13905 +0.5 4.0 flagellar assembly protein FliH compare
DZA65_RS12230 +0.5 1.5 HrpP protein compare
DZA65_RS14245 +0.5 1.9 acyl carrier protein compare
DZA65_RS08140 +0.5 1.2 type II toxin-antitoxin system HicB family antitoxin compare
DZA65_RS14835 +0.5 1.5 N-acetyltransferase compare
DZA65_RS20105 +0.5 1.4 acyl carrier protein compare
DZA65_RS01675 +0.5 2.5 YraN family protein compare
DZA65_RS12875 +0.5 2.1 thiol peroxidase compare
DZA65_RS09095 +0.5 1.6 hypothetical protein compare
DZA65_RS07110 +0.5 3.2 dTDP-glucose 4,6-dehydratase compare
DZA65_RS18655 +0.5 0.7 DUF1471 domain-containing protein compare
DZA65_RS01020 +0.5 1.2 YeeE/YedE family protein compare
DZA65_RS08560 +0.4 1.9 type VI secretion system baseplate subunit TssG compare
DZA65_RS12550 +0.4 1.8 hypothetical protein compare
DZA65_RS13940 +0.4 3.5 flagellar biosynthetic protein FliO compare
DZA65_RS14090 +0.4 3.8 flagellar transcriptional regulator FlhC compare
DZA65_RS14095 +0.4 3.5 flagellar transcriptional regulator FlhD compare
DZA65_RS14445 +0.4 1.5 hypothetical protein compare
DZA65_RS13505 +0.4 2.1 hypothetical protein compare
DZA65_RS13915 +0.4 3.3 flagella biosynthesis chaperone FliJ compare
DZA65_RS07980 +0.4 1.1 phosphonate C-P lyase system protein PhnL compare
DZA65_RS22880 +0.4 1.5 YciY family protein compare
DZA65_RS14045 +0.4 3.1 protein phosphatase CheZ compare
DZA65_RS16475 +0.4 1.4 hypothetical protein compare
DZA65_RS18895 +0.4 1.8 ABC transporter ATP-binding protein compare
DZA65_RS03665 +0.4 1.5 TOBE domain-containing protein compare
DZA65_RS00540 +0.4 2.4 transcriptional regulator compare
DZA65_RS09615 +0.4 1.7 acyl carrier protein compare
DZA65_RS11355 +0.4 1.9 methylated-DNA--[protein]-cysteine S-methyltransferase compare
DZA65_RS12115 +0.4 1.8 hypothetical protein compare
DZA65_RS18600 +0.4 1.0 DUF1330 domain-containing protein compare
DZA65_RS08855 +0.4 1.1 hypothetical protein compare
DZA65_RS10575 +0.4 2.6 MurR/RpiR family transcriptional regulator compare
DZA65_RS13985 +0.4 2.9 flagellar basal-body rod protein FlgG compare
DZA65_RS02095 +0.4 1.2 helix-turn-helix transcriptional regulator compare
DZA65_RS10390 +0.4 1.9 phage tail protein compare
DZA65_RS18200 +0.4 0.9 hypothetical protein compare
DZA65_RS13235 +0.4 1.7 AraC family transcriptional regulator compare
DZA65_RS12635 +0.4 1.9 recombinase family protein compare
DZA65_RS13895 +0.4 3.5 flagellar basal body M-ring protein FliF compare
DZA65_RS16870 +0.4 2.8 cyclic-guanylate-specific phosphodiesterase compare
DZA65_RS16375 +0.4 1.8 hypothetical protein compare
DZA65_RS06660 +0.4 1.0 tRNA-Met compare
DZA65_RS14035 +0.4 3.2 flagellar biosynthesis protein FlhA compare
DZA65_RS17860 +0.4 1.1 GntR family transcriptional regulator compare
DZA65_RS11565 +0.4 1.4 disulfide bond formation protein DsbB compare
DZA65_RS09580 +0.4 2.3 deoxyribonuclease IV compare
DZA65_RS16480 +0.4 2.0 hypothetical protein compare
DZA65_RS07435 +0.4 1.5 As(III)-sensing metalloregulatory transcriptional repressor ArsR compare
DZA65_RS13320 +0.4 1.1 hotdog fold thioesterase compare
DZA65_RS13900 +0.4 2.8 flagellar motor switch protein FliG compare
DZA65_RS17185 +0.4 1.9 hypoxanthine phosphoribosyltransferase compare
DZA65_RS02580 +0.4 2.3 acetyltransferase compare
DZA65_RS14040 +0.4 3.2 flagellar type III secretion system protein FlhB compare
DZA65_RS11270 +0.4 3.1 virulence factor compare
DZA65_RS03635 +0.4 2.2 sugar transferase compare
DZA65_RS08490 +0.4 1.7 hypothetical protein compare
DZA65_RS00040 +0.3 1.3 DUF2623 domain-containing protein compare
DZA65_RS06215 +0.3 1.3 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
DZA65_RS13720 +0.3 1.8 biofilm formation regulator BssS compare
DZA65_RS19090 +0.3 1.3 DUF721 domain-containing protein compare
DZA65_RS12590 +0.3 1.6 phage baseplate assembly protein V compare
DZA65_RS14085 +0.3 3.0 flagellar motor stator protein MotA compare
DZA65_RS12340 +0.3 1.5 amidohydrolase compare
DZA65_RS09325 +0.3 2.1 ATP-binding cassette domain-containing protein compare
DZA65_RS10680 +0.3 1.1 phage holin, lambda family compare
DZA65_RS18955 +0.3 1.9 SDR family oxidoreductase compare
DZA65_RS20805 +0.3 0.3 intracellular growth attenuator family protein compare
DZA65_RS11555 +0.3 1.0 hypothetical protein compare
DZA65_RS13890 +0.3 2.0 flagellar hook-basal body complex protein FliE compare
DZA65_RS20635 +0.3 2.1 YheU family protein compare
DZA65_RS20995 +0.3 2.3 pirin family protein compare
DZA65_RS11265 +0.3 3.0 virulence factor SrfB compare
DZA65_RS02290 +0.3 1.3 SDR family oxidoreductase compare
DZA65_RS08330 +0.3 1.3 ABC transporter permease subunit compare
DZA65_RS06730 +0.3 1.0 LexA regulated protein compare
DZA65_RS19315 +0.3 1.4 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA compare
DZA65_RS01920 +0.3 1.0 DUF1311 domain-containing protein compare
DZA65_RS01725 +0.3 2.5 3',5'-cyclic-AMP phosphodiesterase compare
DZA65_RS01195 +0.3 1.5 thiazole synthase compare
DZA65_RS13950 +0.3 2.5 flagellar biosynthesis protein FliQ compare
DZA65_RS17050 +0.3 2.1 family 78 glycoside hydrolase catalytic domain compare
DZA65_RS19740 +0.3 1.7 ABC transporter ATP-binding protein compare
DZA65_RS09180 +0.3 1.3 DsbA family protein compare
DZA65_RS03585 +0.3 1.8 helix-turn-helix transcriptional regulator compare
DZA65_RS13495 +0.3 1.7 glutathione peroxidase compare
DZA65_RS13930 +0.3 2.7 flagellar motor switch protein FliM compare
DZA65_RS01875 +0.3 1.4 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DZA65_RS13945 +0.3 2.8 flagellar type III secretion system pore protein FliP compare
DZA65_RS00350 +0.3 0.4 hypothetical protein compare
DZA65_RS09970 +0.3 2.1 pyruvate formate lyase 1-activating protein compare
DZA65_RS16925 +0.3 0.7 anti-sigma-E factor RseA compare
DZA65_RS07560 +0.3 1.1 type II toxin-antitoxin system CcdA family antitoxin compare
DZA65_RS12330 +0.3 1.7 TetR family transcriptional regulator compare
DZA65_RS17900 +0.3 2.4 transcriptional repressor MprA compare
DZA65_RS13835 +0.3 2.3 RNA polymerase sigma factor FliA compare
DZA65_RS13995 +0.3 2.8 flagellar hook protein FlgE compare
DZA65_RS13955 +0.3 2.8 flagellar type III secretion system protein FliR compare
DZA65_RS17225 +0.3 1.8 glutaredoxin-like protein NrdH compare
DZA65_RS09340 +0.3 1.5 glutathione S-transferase compare
DZA65_RS00520 +0.3 1.5 acyl-homoserine-lactone synthase compare
DZA65_RS03770 +0.3 1.8 HlyD family secretion protein compare
DZA65_RS11325 +0.3 1.6 LysR family transcriptional regulator compare
DZA65_RS15150 +0.3 1.2 hypothetical protein compare
DZA65_RS14840 +0.3 1.4 glutamine amidotransferase compare
DZA65_RS13500 +0.3 2.2 vitamin B12 ABC transporter permease BtuC compare
DZA65_RS21235 +0.3 1.6 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
DZA65_RS15075 +0.3 1.9 DUF2635 domain-containing protein compare
DZA65_RS19225 +0.3 1.9 siderophore-interacting protein compare
DZA65_RS19725 +0.3 2.7 phosphomannomutase/phosphoglucomutase compare
DZA65_RS02425 +0.3 1.0 ABC transporter permease compare
DZA65_RS10325 +0.3 1.8 lipoprotein compare
DZA65_RS11640 +0.3 1.6 CoA pyrophosphatase compare
DZA65_RS18110 +0.3 1.4 7-carboxy-7-deazaguanine synthase QueE compare
DZA65_RS06420 +0.3 2.2 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS15130 +0.3 1.3 hypothetical protein compare
DZA65_RS04625 +0.3 1.1 IS4 family transposase compare
DZA65_RS19040 +0.3 1.8 prepilin peptidase-dependent pilin compare
DZA65_RS08775 +0.3 2.0 flavin reductase family protein compare
DZA65_RS15085 +0.3 1.6 DUF1320 domain-containing protein compare
DZA65_RS11275 +0.3 0.7 hypothetical protein compare
DZA65_RS13910 +0.3 2.6 flagellum-specific ATP synthase FliI compare
DZA65_RS06345 +0.3 1.7 co-chaperone YbbN compare
DZA65_RS19085 +0.3 0.6 secA regulator SecM compare
DZA65_RS01425 +0.3 2.0 septum formation inhibitor Maf compare
DZA65_RS22840 +0.3 0.5 hypothetical protein compare
DZA65_RS06810 +0.3 1.7 biotin-dependent carboxyltransferase family protein compare
DZA65_RS16430 +0.3 1.9 hypothetical protein compare
DZA65_RS07355 +0.3 1.8 SnoaL-like domain-containing protein compare
DZA65_RS04285 +0.3 1.4 RpoE-regulated lipoprotein compare
DZA65_RS19285 +0.3 2.1 DUF3380 domain-containing protein compare
DZA65_RS03060 +0.3 1.9 TetR/AcrR family transcriptional regulator compare
DZA65_RS18845 +0.3 1.8 ATP-binding protein compare
DZA65_RS09360 +0.3 1.5 hypothetical protein compare
DZA65_RS15090 +0.3 1.4 hypothetical protein compare
DZA65_RS07105 +0.3 2.0 glycosyltransferase family 2 protein compare
DZA65_RS18775 +0.3 0.7 phage tail protein compare
DZA65_RS12710 +0.3 1.9 serine/threonine protein phosphatase compare
DZA65_RS13980 +0.3 2.4 flagellar basal body L-ring protein FlgH compare
DZA65_RS05555 +0.3 1.3 YaeP family protein compare
DZA65_RS13315 +0.3 1.5 hypothetical protein compare
DZA65_RS01960 +0.3 0.8 2-iminobutanoate/2-iminopropanoate deaminase compare
DZA65_RS06490 +0.3 1.4 YpfN family protein compare
DZA65_RS14485 +0.3 1.2 hypothetical protein compare
DZA65_RS12385 +0.3 0.9 ABC transporter permease compare
DZA65_RS09775 +0.3 1.7 oxygen-insensitive NADPH nitroreductase compare
DZA65_RS18690 +0.3 1.2 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 compare
DZA65_RS04370 +0.3 1.2 cysteine synthase A compare
DZA65_RS11650 +0.3 2.0 cellobiose phosphorylase compare
DZA65_RS19850 +0.3 1.3 ABC transporter substrate-binding protein compare
DZA65_RS03860 +0.3 1.6 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) compare
DZA65_RS16640 +0.3 0.7 YfgM family protein compare
DZA65_RS01720 +0.3 1.6 DUF1249 family protein compare
DZA65_RS09815 +0.3 1.7 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC compare
DZA65_RS12015 +0.3 0.9 VENN motif pre-toxin domain-containing protein compare
DZA65_RS10550 +0.3 0.9 murein DD-endopeptidase MepM compare
DZA65_RS03800 +0.3 1.5 hypothetical protein compare
DZA65_RS13925 +0.3 2.0 flagellar basal body-associated protein FliL compare
DZA65_RS04835 +0.3 0.9 conjugal transfer protein TraR compare
DZA65_RS13605 +0.3 1.4 purine nucleoside phosphoramidase compare
DZA65_RS02330 +0.3 1.6 ABC transporter ATP-binding protein compare
DZA65_RS09950 +0.3 1.6 MBL fold metallo-hydrolase compare
DZA65_RS19705 +0.3 1.9 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
DZA65_RS08425 +0.3 0.4 malonate decarboxylase acyl carrier protein compare
DZA65_RS06485 +0.3 1.1 esterase compare
DZA65_RS10900 +0.3 1.2 YciI family protein compare
DZA65_RS07345 +0.2 1.8 NAD(P)H-dependent oxidoreductase compare
DZA65_RS02610 +0.2 1.7 FAD-dependent urate hydroxylase HpxO compare
DZA65_RS06310 +0.2 1.7 o-succinylbenzoate synthase compare
DZA65_RS09410 +0.2 1.2 ribbon-helix-helix protein, CopG family compare
DZA65_RS15060 +0.2 0.7 hypothetical protein compare
DZA65_RS15505 +0.2 2.1 long-chain fatty acid transporter FadL compare
DZA65_RS00245 +0.2 1.3 ABC transporter ATP-binding protein compare
DZA65_RS04485 +0.2 1.1 substrate-binding domain-containing protein compare
DZA65_RS06885 +0.2 0.5 cyd operon protein YbgE compare
DZA65_RS15590 +0.2 1.5 isochorismate synthase compare
DZA65_RS04345 +0.2 1.2 helix-turn-helix transcriptional regulator compare
DZA65_RS11500 +0.2 0.8 hypothetical protein compare
DZA65_RS08610 +0.2 1.7 membrane protein compare
DZA65_RS04850 +0.2 0.9 hypothetical protein compare
DZA65_RS05145 +0.2 1.4 hypothetical protein compare
DZA65_RS03895 +0.2 1.4 myo-inosose-2 dehydratase compare
DZA65_RS00680 +0.2 1.0 M55 family metallopeptidase compare
DZA65_RS03625 +0.2 2.2 polysaccharide biosynthesis protein compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in control experiments

For control kanamycin across organisms