Experiment setATCH241 for Dickeya dianthicola ME23

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DZA65_RS04310 -2.7 -11.2 Dyp-type peroxidase compare
DZA65_RS16715 -1.8 -2.3 Fe-S cluster assembly scaffold IscU compare
DZA65_RS20555 -1.7 -3.8 sulfurtransferase complex subunit TusD compare
DZA65_RS13085 -1.7 -4.7 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS05840 -1.6 -3.0 peroxiredoxin C compare
DZA65_RS16710 -1.5 -3.2 iron-sulfur cluster assembly protein IscA compare
DZA65_RS06900 -1.4 -3.1 colicin uptake protein TolR compare
DZA65_RS20550 -1.4 -3.7 sulfurtransferase complex subunit TusC compare
DZA65_RS15370 -1.4 -5.4 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS01005 -1.3 -3.1 NAD(P)H-flavin reductase compare
DZA65_RS13755 -1.3 -6.9 glucan biosynthesis protein G compare
DZA65_RS21445 -1.3 -3.8 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS13750 -1.3 -8.9 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS03230 -1.2 -2.1 transcription termination/antitermination protein NusA compare
DZA65_RS10915 -1.2 -5.4 septation protein A compare
DZA65_RS10030 -1.2 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS01350 -1.2 -2.6 DNA-binding transcriptional regulator Fis compare
DZA65_RS17985 -1.1 -2.8 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DZA65_RS21115 -1.1 -6.8 class I adenylate cyclase compare
DZA65_RS02505 -1.0 -2.2 peptide chain release factor 3 compare
DZA65_RS11865 -1.0 -3.8 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS16705 -1.0 -3.3 co-chaperone HscB compare
DZA65_RS16090 -1.0 -1.5 sulfurtransferase TusE compare
DZA65_RS22195 -1.0 -5.9 ribosome-dependent GTPase TypA compare
DZA65_RS16885 -1.0 -4.2 pyridoxine 5'-phosphate synthase compare
DZA65_RS11830 -1.0 -5.2 DNA-binding transcriptional regulator KdgR compare
DZA65_RS00800 -1.0 -2.7 O-antigen ligase family protein compare
DZA65_RS19670 -0.9 -3.0 FtsH protease activity modulator HflK compare
DZA65_RS17400 -0.9 -4.9 glutamate--cysteine ligase compare
DZA65_RS10555 -0.9 -1.9 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS21475 -0.9 -2.1 met regulon transcriptional regulator MetJ compare
DZA65_RS06830 -0.9 -5.5 succinate dehydrogenase membrane anchor subunit compare
DZA65_RS11435 -0.9 -3.0 redox-regulated ATPase YchF compare
DZA65_RS21790 -0.9 -2.2 sulfurtransferase TusA compare
DZA65_RS21075 -0.9 -2.6 magnesium/cobalt transporter CorA compare
DZA65_RS05295 -0.9 -1.4 RNA pyrophosphohydrolase compare
DZA65_RS05965 -0.9 -3.2 protoheme IX farnesyltransferase compare
DZA65_RS20545 -0.8 -2.3 sulfurtransferase complex subunit TusB compare
DZA65_RS19685 -0.8 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS06335 -0.8 -1.9 DUF1778 domain-containing protein compare
DZA65_RS03670 -0.8 -3.4 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS06835 -0.8 -5.8 succinate dehydrogenase flavoprotein subunit compare
DZA65_RS00360 -0.8 -4.2 MarR family transcriptional regulator compare
DZA65_RS10060 -0.8 -3.6 ATP phosphoribosyltransferase compare
DZA65_RS21090 -0.8 -1.2 tyrosine recombinase XerC compare
DZA65_RS14355 -0.8 -2.5 TraR/DksA family transcriptional regulator compare
DZA65_RS12505 -0.8 -3.9 carboxy terminal-processing peptidase compare
DZA65_RS21080 -0.8 -4.6 DNA helicase II compare
DZA65_RS05985 -0.8 -2.8 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS13670 -0.8 -3.0 phosphate acyltransferase PlsX compare
DZA65_RS22640 -0.8 -3.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS06860 -0.8 -4.3 succinate--CoA ligase subunit alpha compare
DZA65_RS09375 -0.8 -1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS15445 -0.7 -2.4 YfcL family protein compare
DZA65_RS19175 -0.7 -5.1 catabolite repressor/activator compare
DZA65_RS03260 -0.7 -2.7 lipoprotein NlpI compare
DZA65_RS04215 -0.7 -1.9 SsrA-binding protein SmpB compare
DZA65_RS03130 -0.7 -3.8 malate dehydrogenase compare
DZA65_RS09395 -0.7 -1.8 plasmid stabilization protein compare
DZA65_RS07665 -0.7 -2.1 AlpA family transcriptional regulator compare
DZA65_RS04355 -0.7 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS06825 -0.7 -4.4 succinate dehydrogenase cytochrome b556 subunit compare
DZA65_RS06840 -0.7 -3.5 succinate dehydrogenase iron-sulfur subunit compare
DZA65_RS16370 -0.7 -1.4 hypothetical protein compare
DZA65_RS00420 -0.7 -3.5 FtsX-like permease family protein compare
DZA65_RS09825 -0.7 -3.6 arginine ABC transporter substrate-binding protein compare
DZA65_RS20865 -0.7 -1.3 pimeloyl-ACP methyl ester esterase BioH compare
DZA65_RS01430 -0.6 -3.0 ribonuclease G compare
DZA65_RS04420 -0.6 -4.7 fumarate hydratase compare
DZA65_RS21575 -0.6 -1.8 6-phosphofructokinase compare
DZA65_RS10055 -0.6 -3.0 histidinol dehydrogenase compare
DZA65_RS18650 -0.6 -1.6 alanine racemase compare
DZA65_RS22210 -0.6 -4.6 nitrogen regulation protein NR(I) compare
DZA65_RS13425 -0.6 -3.6 nicotinate phosphoribosyltransferase compare
DZA65_RS12745 -0.6 -2.7 sodium-potassium/proton antiporter ChaA compare
DZA65_RS21355 -0.6 -1.6 ilv operon leader peptide compare
DZA65_RS12955 -0.6 -3.4 peptide ABC transporter substrate-binding protein SapA compare
DZA65_RS15380 -0.6 -3.4 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS02150 -0.6 -1.8 helix-turn-helix transcriptional regulator compare
DZA65_RS06040 -0.6 -2.9 7-cyano-7-deazaguanine synthase QueC compare
DZA65_RS17115 -0.6 -2.1 bifunctional glycosyl transferase/transpeptidase compare
DZA65_RS06020 -0.6 -3.3 endopeptidase La compare
DZA65_RS16440 -0.6 -2.0 peptidase compare
DZA65_RS21050 -0.6 -1.6 hypothetical protein compare
DZA65_RS16910 -0.6 -3.0 elongation factor 4 compare
DZA65_RS05960 -0.6 -3.8 MFS transporter compare
DZA65_RS00490 -0.6 -2.5 acyl carrier protein compare
DZA65_RS03495 -0.6 -3.3 single-stranded-DNA-specific exonuclease RecJ compare
DZA65_RS22450 -0.6 -2.4 acyl carrier protein compare
DZA65_RS08450 -0.6 -1.6 malonate decarboxylase subunit epsilon compare
DZA65_RS20875 -0.6 -1.5 Fe-S biogenesis protein NfuA compare
DZA65_RS03605 -0.6 -1.2 cation efflux system protein CusF compare
DZA65_RS19160 -0.6 -1.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS18160 -0.6 -1.2 glycerate kinase compare
DZA65_RS20355 -0.6 -1.9 Trk system potassium transporter TrkA compare
DZA65_RS10675 -0.6 -2.3 hypothetical protein compare
DZA65_RS05860 -0.6 -1.8 preprotein translocase subunit YajC compare
DZA65_RS08800 -0.6 -3.5 helix-turn-helix transcriptional regulator compare
DZA65_RS06360 -0.6 -1.4 ABC transporter ATP-binding protein compare
DZA65_RS17885 -0.6 -3.0 glycine betaine/L-proline ABC transporter substrate-binding protein ProX compare
DZA65_RS12825 -0.6 -2.1 DUF333 domain-containing protein compare
DZA65_RS22005 -0.6 -4.1 inorganic phosphate transporter PitA compare
DZA65_RS18400 -0.5 -1.5 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DZA65_RS18600 -0.5 -1.1 DUF1330 domain-containing protein compare
DZA65_RS07270 -0.5 -3.7 D-galactonate utilization transcriptional regulator DgoR compare
DZA65_RS20860 -0.5 -2.7 RNA-binding transcriptional accessory protein compare
DZA65_RS22735 -0.5 -1.2 hypothetical protein compare
DZA65_RS04160 -0.5 -1.2 DUF2590 family protein compare
DZA65_RS05980 -0.5 -3.3 cytochrome o ubiquinol oxidase subunit I compare
DZA65_RS19480 -0.5 -2.3 homoserine kinase compare
DZA65_RS04145 -0.5 -2.3 hypothetical protein compare
DZA65_RS16045 -0.5 -2.7 polyphosphate kinase 1 compare
DZA65_RS15515 -0.5 -3.6 phospholipid-binding lipoprotein MlaA compare
DZA65_RS07180 -0.5 -3.1 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS21715 -0.5 -0.9 L(+)-tartrate dehydratase subunit beta compare
DZA65_RS00095 -0.5 -1.5 AsnC family transcriptional regulator compare
DZA65_RS22360 -0.5 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS05855 -0.5 -3.0 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS20840 -0.5 -2.3 two-component system response regulator OmpR compare
DZA65_RS12995 -0.5 -2.5 exoribonuclease II compare
DZA65_RS06855 -0.5 -2.7 ADP-forming succinate--CoA ligase subunit beta compare
DZA65_RS13120 -0.5 -1.9 ribonuclease T compare
DZA65_RS15135 -0.5 -1.4 hypothetical protein compare
DZA65_RS08010 -0.5 -2.6 hypothetical protein compare
DZA65_RS18915 -0.5 -2.3 DeoR/GlpR transcriptional regulator compare
DZA65_RS10045 -0.5 -2.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS11395 -0.5 -1.2 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS19665 -0.5 -1.6 protease modulator HflC compare
DZA65_RS07460 -0.5 -2.2 SDR family oxidoreductase compare
DZA65_RS19290 -0.5 -1.2 hypothetical protein compare
DZA65_RS20220 -0.5 -3.6 glucose-6-phosphate isomerase compare
DZA65_RS07690 -0.5 -1.9 Hcp family type VI secretion system effector compare
DZA65_RS04390 -0.5 -1.8 accessory factor UbiK family protein compare
DZA65_RS01710 -0.5 -0.9 outer membrane channel protein TolC compare
DZA65_RS09875 -0.5 -2.3 cold shock-like protein CspD compare
DZA65_RS05310 -0.5 -3.2 thymidylate synthase compare
DZA65_RS08190 -0.5 -2.2 LacI family DNA-binding transcriptional regulator compare
DZA65_RS16155 -0.5 -3.2 NupC/NupG family nucleoside CNT transporter compare
DZA65_RS03410 -0.5 -1.0 tRNA-Leu compare
DZA65_RS08145 -0.5 -1.3 type II toxin-antitoxin system HicA family toxin compare
DZA65_RS10585 -0.5 -2.3 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS10680 -0.5 -1.4 phage holin, lambda family compare
DZA65_RS18695 -0.5 -2.2 type I-F CRISPR-associated protein Csy3 compare
DZA65_RS07120 -0.5 -1.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS10980 -0.5 -1.6 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS17875 -0.5 -2.1 glycine betaine/L-proline ABC transporter ATP-binding protein ProV compare
DZA65_RS22985 -0.5 -0.8 hypothetical protein compare
DZA65_RS13590 -0.5 -1.4 phosphotransferase compare
DZA65_RS13570 -0.4 -2.0 glycine zipper 2TM domain-containing protein compare
DZA65_RS07565 -0.4 -1.6 CcdB family protein compare
DZA65_RS01030 -0.4 -1.8 acetyl-CoA C-acyltransferase FadA compare
DZA65_RS06515 -0.4 -1.9 fluoride efflux transporter CrcB compare
DZA65_RS16105 -0.4 -2.0 CoA-binding protein compare
DZA65_RS15285 -0.4 -2.1 phosphate acetyltransferase compare
DZA65_RS09020 -0.4 -1.9 molybdopterin synthase catalytic subunit MoaE compare
DZA65_RS05405 -0.4 -2.9 flap endonuclease Xni compare
DZA65_RS21610 -0.4 -2.4 envelope stress response regulator transcription factor CpxR compare
DZA65_RS01525 -0.4 -1.6 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS22930 -0.4 -1.3 hypothetical protein compare
DZA65_RS05420 -0.4 -1.8 YqcC family protein compare
DZA65_RS15495 -0.4 -1.7 hypothetical protein compare
DZA65_RS20195 -0.4 -1.7 fumarate reductase subunit FrdD compare
DZA65_RS00790 -0.4 -1.1 glycosyltransferase family 4 protein compare
DZA65_RS11585 -0.4 -1.9 septum site-determining protein MinC compare
DZA65_RS17255 -0.4 -1.0 ribonuclease HI compare
DZA65_RS01560 -0.4 -3.1 phospholipid-binding protein MlaC compare
DZA65_RS08595 -0.4 -1.4 type VI secretion system-associated protein TagO compare
DZA65_RS15280 -0.4 -1.8 acetate kinase compare
DZA65_RS03320 -0.4 -1.5 purine-nucleoside phosphorylase compare
DZA65_RS13875 -0.4 -3.1 flagellar filament capping protein FliD compare
DZA65_RS06510 -0.4 -0.8 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS13595 -0.4 -1.4 penicillin-binding protein activator LpoB compare
DZA65_RS14515 -0.4 -1.1 transposase compare
DZA65_RS05240 -0.4 -2.1 oxidative damage protection protein compare
DZA65_RS08270 -0.4 -1.1 biopolymer transporter ExbD compare
DZA65_RS01550 -0.4 -2.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS03185 -0.4 -0.5 ribosome assembly RNA-binding protein YhbY compare
DZA65_RS08235 -0.4 -2.6 TetR/AcrR family transcriptional regulator compare
DZA65_RS18310 -0.4 -2.2 HlyC/CorC family transporter compare
DZA65_RS11915 -0.4 -1.0 ferrous iron transport protein A compare
DZA65_RS04495 -0.4 -2.3 ABC transporter ATP-binding protein compare
DZA65_RS09340 -0.4 -1.3 glutathione S-transferase compare
DZA65_RS16635 -0.4 -0.7 outer membrane protein assembly factor BamB compare
DZA65_RS06990 -0.4 -3.2 UDP-glucose 4-epimerase GalE compare
DZA65_RS22665 -0.4 -1.9 helix-turn-helix domain-containing protein compare
DZA65_RS11595 -0.4 -1.1 cell division topological specificity factor MinE compare
DZA65_RS12020 -0.4 -1.5 ribonuclease toxin immunity protein CdiI compare
DZA65_RS08535 -0.4 -1.1 amidohydrolase compare
DZA65_RS20560 -0.4 -1.7 transcriptional regulator compare
DZA65_RS18285 -0.4 -2.1 gamma-glutamylcyclotransferase compare
DZA65_RS21800 -0.4 -0.8 DcrB family lipoprotein compare
DZA65_RS22880 -0.4 -1.2 YciY family protein compare
DZA65_RS13125 -0.4 -1.3 Grx4 family monothiol glutaredoxin compare
DZA65_RS09915 -0.4 -2.1 leucine-responsive transcriptional regulator Lrp compare
DZA65_RS04295 -0.4 -2.1 transcriptional regulator compare
DZA65_RS14295 -0.4 -0.9 DUF2594 family protein compare
DZA65_RS00810 -0.4 -1.1 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS19085 -0.4 -0.9 secA regulator SecM compare
DZA65_RS11525 -0.4 -1.2 hypothetical protein compare
DZA65_RS19350 -0.4 -1.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in control experiments

For control kanamycin across organisms