Experiment setATCH240 for Dickeya dianthicola ME23

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DZA65_RS04310 -2.8 -11.3 Dyp-type peroxidase compare
DZA65_RS20555 -2.0 -3.9 sulfurtransferase complex subunit TusD compare
DZA65_RS21790 -1.9 -3.7 sulfurtransferase TusA compare
DZA65_RS21090 -1.8 -2.4 tyrosine recombinase XerC compare
DZA65_RS16370 -1.8 -2.5 hypothetical protein compare
DZA65_RS16715 -1.7 -2.2 Fe-S cluster assembly scaffold IscU compare
DZA65_RS16090 -1.6 -1.6 sulfurtransferase TusE compare
DZA65_RS16635 -1.6 -2.9 outer membrane protein assembly factor BamB compare
DZA65_RS19085 -1.5 -2.0 secA regulator SecM compare
DZA65_RS18160 -1.4 -2.1 glycerate kinase compare
DZA65_RS01005 -1.4 -3.9 NAD(P)H-flavin reductase compare
DZA65_RS00740 -1.4 -2.5 nucleoid occlusion factor SlmA compare
DZA65_RS13750 -1.4 -10.1 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS22895 -1.4 -2.5 hypothetical protein compare
DZA65_RS22640 -1.3 -5.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS15370 -1.3 -5.1 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS06900 -1.3 -2.8 colicin uptake protein TolR compare
DZA65_RS03255 -1.3 -1.5 polyribonucleotide nucleotidyltransferase compare
DZA65_RS10915 -1.3 -5.9 septation protein A compare
DZA65_RS00800 -1.3 -3.0 O-antigen ligase family protein compare
DZA65_RS13755 -1.2 -6.4 glucan biosynthesis protein G compare
DZA65_RS06835 -1.1 -7.4 succinate dehydrogenase flavoprotein subunit compare
DZA65_RS21445 -1.1 -3.3 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS03130 -1.1 -5.2 malate dehydrogenase compare
DZA65_RS03230 -1.1 -2.5 transcription termination/antitermination protein NusA compare
DZA65_RS03670 -1.1 -4.3 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS05840 -1.1 -2.3 peroxiredoxin C compare
DZA65_RS06510 -1.1 -0.8 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS09240 -1.0 -1.5 biotin carboxyl carrier domain-containing protein compare
DZA65_RS09395 -1.0 -2.6 plasmid stabilization protein compare
DZA65_RS01710 -1.0 -2.0 outer membrane channel protein TolC compare
DZA65_RS21115 -1.0 -6.4 class I adenylate cyclase compare
DZA65_RS02505 -1.0 -2.1 peptide chain release factor 3 compare
DZA65_RS13085 -1.0 -3.3 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS16705 -1.0 -3.4 co-chaperone HscB compare
DZA65_RS22195 -1.0 -5.7 ribosome-dependent GTPase TypA compare
DZA65_RS21475 -1.0 -1.6 met regulon transcriptional regulator MetJ compare
DZA65_RS13670 -1.0 -3.9 phosphate acyltransferase PlsX compare
DZA65_RS15280 -1.0 -4.1 acetate kinase compare
DZA65_RS19670 -1.0 -2.9 FtsH protease activity modulator HflK compare
DZA65_RS07460 -0.9 -3.6 SDR family oxidoreductase compare
DZA65_RS11830 -0.9 -5.0 DNA-binding transcriptional regulator KdgR compare
DZA65_RS11865 -0.9 -2.5 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS06840 -0.9 -4.5 succinate dehydrogenase iron-sulfur subunit compare
DZA65_RS20550 -0.9 -2.4 sulfurtransferase complex subunit TusC compare
DZA65_RS06825 -0.9 -5.2 succinate dehydrogenase cytochrome b556 subunit compare
DZA65_RS00420 -0.9 -4.4 FtsX-like permease family protein compare
DZA65_RS22005 -0.9 -5.5 inorganic phosphate transporter PitA compare
DZA65_RS15380 -0.8 -4.6 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS06830 -0.8 -4.8 succinate dehydrogenase membrane anchor subunit compare
DZA65_RS18270 -0.8 -2.2 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DZA65_RS06020 -0.8 -4.0 endopeptidase La compare
DZA65_RS15515 -0.8 -5.1 phospholipid-binding lipoprotein MlaA compare
DZA65_RS13435 -0.8 -5.8 porin compare
DZA65_RS17400 -0.8 -4.0 glutamate--cysteine ligase compare
DZA65_RS16710 -0.8 -1.6 iron-sulfur cluster assembly protein IscA compare
DZA65_RS10475 -0.8 -2.7 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
DZA65_RS16885 -0.8 -3.2 pyridoxine 5'-phosphate synthase compare
DZA65_RS03465 -0.8 -2.0 FAD assembly factor SdhE compare
DZA65_RS01430 -0.8 -2.8 ribonuclease G compare
DZA65_RS21080 -0.8 -4.3 DNA helicase II compare
DZA65_RS07315 -0.7 -3.1 transposase compare
DZA65_RS12955 -0.7 -4.0 peptide ABC transporter substrate-binding protein SapA compare
DZA65_RS12995 -0.7 -3.2 exoribonuclease II compare
DZA65_RS01350 -0.7 -1.5 DNA-binding transcriptional regulator Fis compare
DZA65_RS19665 -0.7 -2.4 protease modulator HflC compare
DZA65_RS15445 -0.7 -2.2 YfcL family protein compare
DZA65_RS10030 -0.7 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS18400 -0.7 -1.9 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DZA65_RS19175 -0.7 -5.1 catabolite repressor/activator compare
DZA65_RS11395 -0.7 -1.6 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS16910 -0.7 -3.9 elongation factor 4 compare
DZA65_RS11550 -0.7 -2.4 fatty acid metabolism transcriptional regulator FadR compare
DZA65_RS05980 -0.7 -3.4 cytochrome o ubiquinol oxidase subunit I compare
DZA65_RS06860 -0.7 -3.5 succinate--CoA ligase subunit alpha compare
DZA65_RS03320 -0.7 -2.0 purine-nucleoside phosphorylase compare
DZA65_RS07180 -0.7 -3.8 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS22735 -0.7 -1.4 hypothetical protein compare
DZA65_RS00175 -0.7 -2.3 ABC transporter permease compare
DZA65_RS22985 -0.7 -1.6 hypothetical protein compare
DZA65_RS05960 -0.7 -4.1 MFS transporter compare
DZA65_RS03260 -0.7 -2.4 lipoprotein NlpI compare
DZA65_RS09990 -0.7 -1.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS06895 -0.7 -2.5 Tol-Pal system protein TolQ compare
DZA65_RS02060 -0.7 -2.4 leucyl aminopeptidase compare
DZA65_RS04355 -0.6 -4.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS05310 -0.6 -4.1 thymidylate synthase compare
DZA65_RS13475 -0.6 -3.1 EAL domain-containing protein compare
DZA65_RS12975 -0.6 -2.9 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS15285 -0.6 -2.8 phosphate acetyltransferase compare
DZA65_RS17015 -0.6 -1.5 PTS lactose/cellobiose transporter subunit IIA compare
DZA65_RS04220 -0.6 -2.4 type II toxin-antitoxin system RatA family toxin compare
DZA65_RS13120 -0.6 -2.1 ribonuclease T compare
DZA65_RS15060 -0.6 -1.9 hypothetical protein compare
DZA65_RS13595 -0.6 -2.0 penicillin-binding protein activator LpoB compare
DZA65_RS11435 -0.6 -2.1 redox-regulated ATPase YchF compare
DZA65_RS11925 -0.6 -1.2 DNA-damage-inducible protein J compare
DZA65_RS07560 -0.6 -1.8 type II toxin-antitoxin system CcdA family antitoxin compare
DZA65_RS16155 -0.6 -3.8 NupC/NupG family nucleoside CNT transporter compare
DZA65_RS01020 -0.6 -1.2 YeeE/YedE family protein compare
DZA65_RS00790 -0.6 -1.2 glycosyltransferase family 4 protein compare
DZA65_RS05985 -0.6 -2.2 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS15200 -0.6 -1.1 hypothetical protein compare
DZA65_RS20355 -0.6 -2.2 Trk system potassium transporter TrkA compare
DZA65_RS08800 -0.6 -2.8 helix-turn-helix transcriptional regulator compare
DZA65_RS16045 -0.6 -2.8 polyphosphate kinase 1 compare
DZA65_RS04420 -0.6 -4.1 fumarate hydratase compare
DZA65_RS12020 -0.6 -2.0 ribonuclease toxin immunity protein CdiI compare
DZA65_RS09570 -0.6 -1.7 1-phosphofructokinase compare
DZA65_RS19160 -0.6 -1.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS13125 -0.6 -1.8 Grx4 family monothiol glutaredoxin compare
DZA65_RS12575 -0.6 -3.0 hypothetical protein compare
DZA65_RS15520 -0.6 -3.6 tRNA-Arg compare
DZA65_RS19875 -0.6 -1.5 organic hydroperoxide resistance protein compare
DZA65_RS17795 -0.6 -2.9 allantoate amidohydrolase compare
DZA65_RS10050 -0.6 -2.1 histidinol-phosphate transaminase compare
DZA65_RS01560 -0.6 -3.9 phospholipid-binding protein MlaC compare
DZA65_RS04730 -0.6 -1.5 hypothetical protein compare
DZA65_RS22025 -0.5 -1.8 DUF1471 domain-containing protein compare
DZA65_RS12505 -0.5 -2.7 carboxy terminal-processing peptidase compare
DZA65_RS03605 -0.5 -1.2 cation efflux system protein CusF compare
DZA65_RS15740 -0.5 -1.4 putative motility protein compare
DZA65_RS12355 -0.5 -2.1 ABC transporter permease compare
DZA65_RS02940 -0.5 -2.3 DedA family protein compare
DZA65_RS10055 -0.5 -2.4 histidinol dehydrogenase compare
DZA65_RS11055 -0.5 -2.7 electron transport complex subunit RsxA compare
DZA65_RS04370 -0.5 -2.5 cysteine synthase A compare
DZA65_RS21615 -0.5 -1.7 envelope stress sensor histidine kinase CpxA compare
DZA65_RS16440 -0.5 -1.7 peptidase compare
DZA65_RS22210 -0.5 -3.5 nitrogen regulation protein NR(I) compare
DZA65_RS15620 -0.5 -2.0 alpha/beta hydrolase compare
DZA65_RS21160 -0.5 -2.0 GNAT family N-acetyltransferase compare
DZA65_RS04215 -0.5 -1.3 SsrA-binding protein SmpB compare
DZA65_RS17330 -0.5 -2.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DZA65_RS08190 -0.5 -1.7 LacI family DNA-binding transcriptional regulator compare
DZA65_RS11970 -0.5 -1.6 hypothetical protein compare
DZA65_RS13700 -0.5 -2.1 ribonuclease E compare
DZA65_RS10980 -0.5 -1.5 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS13485 -0.5 -1.9 endopeptidase compare
DZA65_RS15900 -0.5 -1.6 MarR family transcriptional regulator compare
DZA65_RS10060 -0.5 -2.2 ATP phosphoribosyltransferase compare
DZA65_RS08145 -0.5 -1.6 type II toxin-antitoxin system HicA family toxin compare
DZA65_RS16730 -0.5 -1.8 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ compare
DZA65_RS03475 -0.5 -2.0 flavodoxin FldB compare
DZA65_RS05175 -0.5 -1.7 hypothetical protein compare
DZA65_RS10550 -0.5 -1.4 murein DD-endopeptidase MepM compare
DZA65_RS04700 -0.5 -1.1 transposase compare
DZA65_RS05855 -0.5 -2.8 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS12015 -0.5 -1.6 VENN motif pre-toxin domain-containing protein compare
DZA65_RS20220 -0.5 -3.6 glucose-6-phosphate isomerase compare
DZA65_RS22360 -0.5 -4.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS17885 -0.5 -2.6 glycine betaine/L-proline ABC transporter substrate-binding protein ProX compare
DZA65_RS03210 -0.5 -0.8 preprotein translocase subunit SecG compare
DZA65_RS18680 -0.5 -3.3 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS02850 -0.5 -3.9 aspartate ammonia-lyase compare
DZA65_RS01550 -0.5 -2.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS14485 -0.5 -1.9 hypothetical protein compare
DZA65_RS02870 -0.5 -1.5 chorismate lyase compare
DZA65_RS13880 -0.5 -2.3 flagellar export chaperone FliS compare
DZA65_RS18145 -0.5 -3.6 GTP diphosphokinase compare
DZA65_RS05975 -0.5 -0.8 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS17845 -0.5 -1.3 oxalurate catabolism protein HpxZ compare
DZA65_RS15375 -0.5 -2.9 aspartate-semialdehyde dehydrogenase compare
DZA65_RS22975 -0.5 -1.5 hypothetical protein compare
DZA65_RS09415 -0.5 -1.2 hypothetical protein compare
DZA65_RS06885 -0.5 -1.6 cyd operon protein YbgE compare
DZA65_RS04030 -0.5 -1.7 hypothetical protein compare
DZA65_RS06425 -0.5 -1.8 uracil phosphoribosyltransferase compare
DZA65_RS17880 -0.5 -1.1 glycine betaine/L-proline ABC transporter permease ProW compare
DZA65_RS16110 -0.5 -2.2 DUF2057 family protein compare
DZA65_RS12805 -0.4 -1.3 FMN-dependent NADH-azoreductase compare
DZA65_RS07895 -0.4 -1.7 ABC transporter ATP-binding protein compare
DZA65_RS05935 -0.4 -1.3 protein deglycase YajL compare
DZA65_RS02150 -0.4 -1.7 helix-turn-helix transcriptional regulator compare
DZA65_RS20545 -0.4 -1.2 sulfurtransferase complex subunit TusB compare
DZA65_RS05295 -0.4 -0.9 RNA pyrophosphohydrolase compare
DZA65_RS09015 -0.4 -0.8 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS21355 -0.4 -1.1 ilv operon leader peptide compare
DZA65_RS14710 -0.4 -1.6 LD-carboxypeptidase compare
DZA65_RS18405 -0.4 -3.2 ribonuclease R compare
DZA65_RS07865 -0.4 -1.1 hydrogenase maturation factor HybG compare
DZA65_RS07055 -0.4 -2.1 iron-sulfur cluster carrier protein ApbC compare
DZA65_RS06150 -0.4 -2.1 adenine phosphoribosyltransferase compare
DZA65_RS22930 -0.4 -1.3 hypothetical protein compare
DZA65_RS06855 -0.4 -2.0 ADP-forming succinate--CoA ligase subunit beta compare
DZA65_RS01595 -0.4 -3.4 cell division protein ZapE compare
DZA65_RS22635 -0.4 -1.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS15755 -0.4 -1.6 PTS transporter subunit EIIB compare
DZA65_RS21110 -0.4 -1.6 iron donor protein CyaY compare
DZA65_RS13490 -0.4 -2.0 vitamin B12 ABC transporter ATP-binding protein BtuD compare
DZA65_RS16675 -0.4 -1.9 3-mercaptopyruvate sulfurtransferase compare
DZA65_RS18445 -0.4 -2.1 YggT family protein compare
DZA65_RS22695 -0.4 -2.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS10025 -0.4 -2.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS13645 -0.4 -1.5 beta-ketoacyl-ACP synthase II compare
DZA65_RS09190 -0.4 -1.5 glutamine ABC transporter ATP-binding protein GlnQ compare
DZA65_RS21760 -0.4 -1.8 cell division ATP-binding protein FtsE compare
DZA65_RS16995 -0.4 -2.5 HD domain-containing protein compare
DZA65_RS13450 -0.4 -3.4 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS19685 -0.4 -0.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in control experiments

For control kanamycin across organisms