Experiment setATCH237 for Dickeya dianthicola 67-19

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
HGI48_RS18520 -3.0 -1.9 adenylosuccinate synthase compare
HGI48_RS14260 -3.0 -3.5 NADH-quinone oxidoreductase subunit L compare
HGI48_RS19720 -2.9 -2.8 intracellular growth attenuator family protein compare
HGI48_RS04970 -2.8 -4.5 thymidylate synthase compare
HGI48_RS10430 -2.7 -4.0 TonB system transport protein TonB compare
HGI48_RS10170 -2.7 -4.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS12060 -2.6 -2.8 RNA chaperone ProQ compare
HGI48_RS19090 -2.6 -3.7 EF-P beta-lysylation protein EpmB compare
HGI48_RS09460 -2.5 -2.5 glutaredoxin, GrxA family compare
HGI48_RS19435 -2.5 -1.9 sulfurtransferase complex subunit TusD compare
HGI48_RS10140 -2.4 -3.5 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS04435 -2.3 -2.4 PTS glucose transporter subunit IIA compare
HGI48_RS17565 -2.3 -5.5 alanine racemase compare
HGI48_RS17770 -2.2 -2.4 DeoR/GlpR transcriptional regulator compare
HGI48_RS13235 -2.2 -8.5 dihydroorotase compare
HGI48_RS06120 -2.2 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS15535 -2.1 -9.2 IMP dehydrogenase compare
HGI48_RS12925 -2.1 -6.3 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS02290 -2.1 -3.0 hypothetical protein compare
HGI48_RS18245 -2.1 -5.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS18605 -2.1 -5.9 ABC transporter ATP-binding protein compare
HGI48_RS16680 -2.1 -2.4 acireductone dioxygenase compare
HGI48_RS05535 -2.1 -1.2 preprotein translocase subunit YajC compare
HGI48_RS11530 -2.0 -2.7 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS18400 -2.0 -6.5 phosphoglycerate dehydrogenase compare
HGI48_RS15445 -2.0 -1.7 hypothetical protein compare
HGI48_RS11375 -2.0 -3.4 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS03265 -2.0 -5.4 lipoprotein NlpI compare
HGI48_RS10975 -2.0 -4.7 redox-regulated ATPase YchF compare
HGI48_RS01210 -1.9 -8.5 phosphoribosylamine--glycine ligase compare
HGI48_RS20045 -1.9 -1.9 tyrosine recombinase XerC compare
HGI48_RS15750 -1.8 -13.0 phosphoribosylformylglycinamidine synthase compare
HGI48_RS13275 -1.8 -10.7 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS16050 -1.8 -1.4 RNA polymerase-binding protein DksA compare
HGI48_RS12865 -1.8 -4.1 AI-2E family transporter YdiK compare
HGI48_RS20560 -1.8 -4.9 methyltransferase domain-containing protein compare
HGI48_RS14285 -1.8 -1.6 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS06070 -1.7 -5.6 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS04305 -1.7 -2.7 type II toxin-antitoxin system RatA family toxin compare
HGI48_RS20035 -1.7 -5.0 DNA helicase II compare
HGI48_RS13280 -1.7 -9.1 glucan biosynthesis protein G compare
HGI48_RS13210 -1.7 -1.6 23S rRNA accumulation protein YceD compare
HGI48_RS00740 -1.7 -6.4 glycosyltransferase family 9 protein compare
HGI48_RS14270 -1.6 -1.3 NADH-quinone oxidoreductase subunit J compare
HGI48_RS16945 -1.6 -3.0 RNA polymerase sigma factor RpoS compare
HGI48_RS02385 -1.6 -4.9 phosphoserine phosphatase compare
HGI48_RS14280 -1.6 -1.9 NADH-quinone oxidoreductase subunit NuoH compare
HGI48_RS06280 -1.6 -3.2 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS15190 -1.5 -3.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS16355 -1.5 -2.6 recombinase RecA compare
HGI48_RS01215 -1.5 -5.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS03440 -1.5 -1.3 site-specific tyrosine recombinase XerD compare
HGI48_RS03520 -1.5 -4.4 sugar transferase compare
HGI48_RS18240 -1.5 -8.0 carbamoyl-phosphate synthase large subunit compare
HGI48_RS06065 -1.5 -3.8 phosphoribosylglycinamide formyltransferase compare
HGI48_RS01900 -1.5 -6.8 aspartate carbamoyltransferase compare
HGI48_RS14435 -1.5 -1.8 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS05790 -1.5 -9.1 multidrug efflux RND transporter permease subunit compare
HGI48_RS10075 -1.4 -6.8 MAPEG family protein compare
HGI48_RS12570 -1.4 -1.8 osmotically-inducible lipoprotein OsmB compare
HGI48_RS14300 -1.4 -1.7 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS18020 -1.4 -2.1 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS00800 -1.4 -2.2 serine O-acetyltransferase compare
HGI48_RS14405 -1.4 -7.2 amidophosphoribosyltransferase compare
HGI48_RS07925 -1.4 -5.2 TetR/AcrR family transcriptional regulator compare
HGI48_RS10900 -1.3 -4.7 fumarate/nitrate reduction transcriptional regulator Fnr compare
HGI48_RS00755 -1.3 -2.7 putative lipopolysaccharide heptosyltransferase III compare
HGI48_RS01290 -1.3 -2.5 DNA-binding transcriptional regulator Fis compare
HGI48_RS14305 -1.3 -1.4 NADH-quinone oxidoreductase subunit B compare
HGI48_RS07055 -1.3 -1.8 IS481 family transposase compare
HGI48_RS18070 -1.3 -4.0 3-isopropylmalate dehydratase small subunit compare
HGI48_RS21430 -1.3 -2.0 F0F1 ATP synthase subunit epsilon compare
HGI48_RS06475 -1.2 -1.8 citrate synthase compare
HGI48_RS03510 -1.2 -8.7 polysaccharide biosynthesis protein compare
HGI48_RS21235 -1.2 -5.7 nitrogen regulation protein NR(I) compare
HGI48_RS17775 -1.2 -3.4 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS10465 -1.2 -5.6 tryptophan synthase subunit beta compare
HGI48_RS21655 -1.2 -1.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS10480 -1.2 -2.9 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS10335 -1.2 -4.2 formyltetrahydrofolate deformylase compare
HGI48_RS00685 -1.2 -2.3 nucleoid occlusion factor SlmA compare
HGI48_RS12580 -1.2 -3.2 orotidine-5'-phosphate decarboxylase compare
HGI48_RS01445 -1.1 -2.4 RNA polymerase factor sigma-54 compare
HGI48_RS14190 -1.1 -1.0 hydrogenase maturation factor HybG compare
HGI48_RS20600 -1.1 -3.1 envelope stress sensor histidine kinase CpxA compare
HGI48_RS06635 -1.1 -6.9 UDP-glucose 4-epimerase GalE compare
HGI48_RS06340 -1.1 -6.0 asparagine synthase B compare
HGI48_RS05795 -1.1 -4.2 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS03555 -1.1 -1.7 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
HGI48_RS08315 -1.1 -1.6 replication initiator protein A compare
HGI48_RS00790 -1.1 -1.4 protein-export chaperone SecB compare
HGI48_RS15470 -1.1 -2.2 type II secretion system minor pseudopilin GspI compare
HGI48_RS18065 -1.1 -5.2 3-isopropylmalate dehydratase large subunit compare
HGI48_RS12720 -1.1 -2.8 EthD family reductase compare
HGI48_RS18030 -1.1 -5.9 catabolite repressor/activator compare
HGI48_RS19430 -1.1 -2.2 sulfurtransferase complex subunit TusC compare
HGI48_RS07570 -1.0 -3.1 iron ABC transporter permease compare
HGI48_RS15930 -1.0 -1.6 TSUP family transporter compare
HGI48_RS13390 -1.0 -4.3 flagellar filament capping protein FliD compare
HGI48_RS17345 -1.0 -2.4 YggS family pyridoxal phosphate-dependent enzyme compare
HGI48_RS05695 -1.0 -4.8 endopeptidase La compare
HGI48_RS18600 -1.0 -3.5 ABC transporter permease compare
HGI48_RS06085 -1.0 -2.0 DnaA inactivator Hda compare
HGI48_RS19900 -1.0 -2.2 gluconate operon transcriptional repressor GntR compare
HGI48_RS00735 -1.0 -1.3 glycosyltransferase family 4 protein compare
HGI48_RS18175 -1.0 -1.4 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA compare
HGI48_RS14350 -1.0 -3.2 acetate kinase compare
HGI48_RS15185 -1.0 -1.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS04450 -1.0 -3.3 cysteine synthase A compare
HGI48_RS03135 -1.0 -1.2 malate dehydrogenase compare
HGI48_RS10090 -1.0 -2.3 dihydroneopterin triphosphate diphosphatase compare
HGI48_RS08540 -1.0 -2.4 H-NS histone family protein compare
HGI48_RS09310 -1.0 -1.5 acyl carrier protein compare
HGI48_RS01050 -1.0 -0.8 tRNA-Thr compare
HGI48_RS00680 -1.0 -1.5 orotate phosphoribosyltransferase compare
HGI48_RS11325 -1.0 -2.9 PTS mannose transporter subunit IID compare
HGI48_RS14040 -1.0 -1.4 LysR family transcriptional regulator compare
HGI48_RS05655 -1.0 -2.7 cytochrome o ubiquinol oxidase subunit I compare
HGI48_RS04315 -0.9 -3.1 outer membrane protein assembly factor BamE compare
HGI48_RS16030 -0.9 -2.8 bifunctional glycosyl transferase/transpeptidase compare
HGI48_RS14610 -0.9 -1.7 Fe(3+)-siderophore ABC transporter permease compare
HGI48_RS19855 -0.9 -6.1 1,4-alpha-glucan branching protein GlgB compare
HGI48_RS10575 -0.9 -1.5 electron transport complex subunit RsxA compare
HGI48_RS03325 -0.9 -2.4 purine-nucleoside phosphorylase compare
HGI48_RS06775 -0.9 -1.3 glycosyltransferase family 2 protein compare
HGI48_RS11310 -0.9 -5.8 TerC family protein compare
HGI48_RS21220 -0.9 -2.7 ribosome-dependent GTPase TypA compare
HGI48_RS03215 -0.9 -0.7 preprotein translocase subunit SecG compare
HGI48_RS04670 -0.9 -1.1 transposase compare
HGI48_RS18060 -0.9 -4.3 3-isopropylmalate dehydrogenase compare
HGI48_RS20070 -0.9 -2.7 class I adenylate cyclase compare
HGI48_RS04495 -0.9 -3.0 nitric oxide reductase transcriptional regulator NorR compare
HGI48_RS12970 -0.9 -5.2 porin compare
HGI48_RS05860 -0.9 -3.2 Kef family K(+) transporter compare
HGI48_RS02075 -0.9 -1.4 hypothetical protein compare
HGI48_RS05530 -0.9 -2.9 tRNA guanosine(34) transglycosylase Tgt compare
HGI48_RS19940 -0.9 -5.6 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HGI48_RS19750 -0.9 -1.9 two-component system response regulator OmpR compare
HGI48_RS11110 -0.9 -1.6 CesT family type III secretion system chaperone compare
HGI48_RS12055 -0.9 -2.5 carboxy terminal-processing peptidase compare
HGI48_RS10990 -0.9 -1.9 AAA family ATPase compare
HGI48_RS00155 -0.9 -1.0 ABC transporter permease compare
HGI48_RS06755 -0.8 -4.0 dTDP-glucose 4,6-dehydratase compare
HGI48_RS15010 -0.8 -5.0 beta-galactosidase compare
HGI48_RS05105 -0.8 -3.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
HGI48_RS17005 -0.8 -1.7 phosphoadenylyl-sulfate reductase compare
HGI48_RS09730 -0.8 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS02715 -0.8 -1.5 chorismate lyase compare
HGI48_RS07295 -0.8 -2.5 addiction module antitoxin compare
HGI48_RS16490 -0.8 -3.6 ABC transporter permease compare
HGI48_RS15830 -0.8 -4.4 elongation factor 4 compare
HGI48_RS01465 -0.8 -4.3 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
HGI48_RS19840 -0.8 -5.3 glycogen synthase GlgA compare
HGI48_RS17235 -0.8 -1.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HGI48_RS02410 -0.8 -1.5 stress-response protein compare
HGI48_RS01480 -0.8 -3.0 phospholipid ABC transporter ATP-binding protein MlaF compare
HGI48_RS03655 -0.8 -1.2 MarR family transcriptional regulator compare
HGI48_RS17585 -0.8 -3.4 Lrp/AsnC family transcriptional regulator compare
HGI48_RS09265 -0.8 -2.0 1-phosphofructokinase compare
HGI48_RS06935 -0.8 -2.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
HGI48_RS10485 -0.8 -4.5 anthranilate synthase component 1 compare
HGI48_RS14575 -0.8 -3.5 phospholipid-binding lipoprotein MlaA compare
HGI48_RS21020 -0.8 -3.5 inorganic phosphate transporter PitA compare
HGI48_RS12670 -0.8 -3.7 Grx4 family monothiol glutaredoxin compare
HGI48_RS05420 -0.8 -2.8 N-acetyltransferase compare
HGI48_RS14355 -0.8 -2.3 phosphate acetyltransferase compare
HGI48_RS14910 -0.8 -3.0 hypothetical protein compare
HGI48_RS14645 -0.8 -1.4 isochorismate synthase compare
HGI48_RS08485 -0.8 -3.0 non-ribosomal peptide synthetase compare
HGI48_RS18535 -0.8 -2.1 FtsH protease activity modulator HflK compare
HGI48_RS01150 -0.8 -2.0 thiazole synthase compare
HGI48_RS20805 -0.8 -1.6 4-oxalocrotonate tautomerase family protein compare
HGI48_RS17025 -0.8 -1.9 hypothetical protein compare
HGI48_RS06730 -0.8 -3.2 polysaccharide biosynthesis/export family protein compare
HGI48_RS15175 -0.8 -1.1 peptidylprolyl isomerase B compare
HGI48_RS15865 -0.7 -5.2 ATP-dependent RNA helicase SrmB compare
HGI48_RS19930 -0.7 -2.5 CpmJ protein compare
HGI48_RS12980 -0.7 -1.4 hypothetical protein compare
HGI48_RS18055 -0.7 -5.2 2-isopropylmalate synthase compare
HGI48_RS03820 -0.7 -1.9 helix-turn-helix domain-containing protein compare
HGI48_RS15295 -0.7 -2.0 DNA helicase IV compare
HGI48_RS20400 -0.7 -2.8 Si-specific NAD(P)(+) transhydrogenase compare
HGI48_RS05325 -0.7 -3.1 GNAT family N-acetyltransferase compare
HGI48_RS18595 -0.7 -3.3 GDP-mannose 4,6-dehydratase compare
HGI48_RS08125 -0.7 -1.0 MarR family transcriptional regulator compare
HGI48_RS03065 -0.7 -2.4 phage major tail tube protein compare
HGI48_RS04440 -0.7 -2.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HGI48_RS10470 -0.7 -3.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS12835 -0.7 -3.0 Fe-S cluster assembly ATPase SufC compare
HGI48_RS19025 -0.7 -1.8 transposase compare
HGI48_RS06675 -0.7 -3.0 6-phosphogluconolactonase compare
HGI48_RS14710 -0.7 -1.7 type II secretion system minor pseudopilin GspI compare
HGI48_RS00440 -0.7 -1.7 DUF2807 domain-containing protein compare
HGI48_RS18180 -0.7 -2.2 co-chaperone DjlA compare
HGI48_RS18510 -0.7 -5.3 class 1 fructose-bisphosphatase compare
HGI48_RS11490 -0.7 -2.7 DNA-binding transcriptional regulator KdgR compare
HGI48_RS16630 -0.7 -4.1 xanthine phosphoribosyltransferase compare
HGI48_RS00915 -0.7 -1.7 Sec-independent protein translocase subunit TatB compare
HGI48_RS20270 -0.7 -4.5 ketol-acid reductoisomerase compare
HGI48_RS18495 -0.7 -2.9 glutathione synthase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in plant experiments

For plant cv.Upstate across organisms