Experiment setATCH236 for Dickeya dianthicola 67-19

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
HGI48_RS10170 -3.8 -5.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS16050 -3.5 -1.6 RNA polymerase-binding protein DksA compare
HGI48_RS14270 -3.4 -2.6 NADH-quinone oxidoreductase subunit J compare
HGI48_RS02290 -3.1 -5.1 hypothetical protein compare
HGI48_RS10430 -2.3 -3.2 TonB system transport protein TonB compare
HGI48_RS15535 -2.3 -10.6 IMP dehydrogenase compare
HGI48_RS04970 -2.2 -3.9 thymidylate synthase compare
HGI48_RS20045 -2.2 -4.4 tyrosine recombinase XerC compare
HGI48_RS11530 -2.1 -2.8 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS13275 -2.1 -11.8 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS14300 -2.0 -2.8 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS19435 -2.0 -1.6 sulfurtransferase complex subunit TusD compare
HGI48_RS01290 -2.0 -2.7 DNA-binding transcriptional regulator Fis compare
HGI48_RS11375 -1.9 -3.4 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS10140 -1.9 -3.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS18400 -1.9 -6.5 phosphoglycerate dehydrogenase compare
HGI48_RS06120 -1.9 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS03440 -1.8 -2.1 site-specific tyrosine recombinase XerD compare
HGI48_RS13280 -1.8 -10.2 glucan biosynthesis protein G compare
HGI48_RS17565 -1.8 -5.5 alanine racemase compare
HGI48_RS03265 -1.8 -4.4 lipoprotein NlpI compare
HGI48_RS21220 -1.8 -6.5 ribosome-dependent GTPase TypA compare
HGI48_RS19090 -1.8 -2.5 EF-P beta-lysylation protein EpmB compare
HGI48_RS14305 -1.8 -2.2 NADH-quinone oxidoreductase subunit B compare
HGI48_RS08355 -1.7 -3.1 IS481 family transposase compare
HGI48_RS06085 -1.7 -3.1 DnaA inactivator Hda compare
HGI48_RS14260 -1.7 -1.8 NADH-quinone oxidoreductase subunit L compare
HGI48_RS02385 -1.6 -6.4 phosphoserine phosphatase compare
HGI48_RS18600 -1.6 -5.5 ABC transporter permease compare
HGI48_RS12580 -1.6 -6.5 orotidine-5'-phosphate decarboxylase compare
HGI48_RS07925 -1.6 -4.5 TetR/AcrR family transcriptional regulator compare
HGI48_RS06475 -1.6 -2.5 citrate synthase compare
HGI48_RS20560 -1.6 -5.3 methyltransferase domain-containing protein compare
HGI48_RS03135 -1.6 -2.0 malate dehydrogenase compare
HGI48_RS19750 -1.5 -3.1 two-component system response regulator OmpR compare
HGI48_RS09745 -1.5 -3.9 histidinol dehydrogenase compare
HGI48_RS13395 -1.5 -3.7 flagellar export chaperone FliS compare
HGI48_RS21430 -1.4 -2.5 F0F1 ATP synthase subunit epsilon compare
HGI48_RS14355 -1.4 -4.1 phosphate acetyltransferase compare
HGI48_RS01215 -1.4 -5.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS01410 -1.4 -1.9 ribosome-associated protein compare
HGI48_RS01210 -1.4 -7.3 phosphoribosylamine--glycine ligase compare
HGI48_RS03510 -1.4 -10.2 polysaccharide biosynthesis protein compare
HGI48_RS19055 -1.4 -1.5 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS00680 -1.4 -2.1 orotate phosphoribosyltransferase compare
HGI48_RS10900 -1.4 -5.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
HGI48_RS17235 -1.3 -2.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HGI48_RS06070 -1.3 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS01900 -1.3 -6.7 aspartate carbamoyltransferase compare
HGI48_RS13390 -1.3 -6.0 flagellar filament capping protein FliD compare
HGI48_RS17775 -1.3 -3.5 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS13235 -1.2 -4.7 dihydroorotase compare
HGI48_RS16945 -1.2 -3.1 RNA polymerase sigma factor RpoS compare
HGI48_RS14035 -1.2 -1.8 LD-carboxypeptidase compare
HGI48_RS15190 -1.2 -4.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS15750 -1.2 -9.3 phosphoribosylformylglycinamidine synthase compare
HGI48_RS17930 -1.2 -1.9 8-oxo-dGTP diphosphatase MutT compare
HGI48_RS06775 -1.2 -1.7 glycosyltransferase family 2 protein compare
HGI48_RS10335 -1.2 -5.3 formyltetrahydrofolate deformylase compare
HGI48_RS18520 -1.2 -1.4 adenylosuccinate synthase compare
HGI48_RS17445 -1.2 -1.7 PTS lactose/cellobiose transporter subunit IIA compare
HGI48_RS12925 -1.2 -4.3 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS04440 -1.2 -4.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HGI48_RS20035 -1.2 -4.3 DNA helicase II compare
HGI48_RS05795 -1.2 -4.6 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS00965 -1.2 -2.0 YeeE/YedE family protein compare
HGI48_RS20595 -1.2 -4.1 envelope stress response regulator transcription factor CpxR compare
HGI48_RS13975 -1.1 -4.8 DNA cytosine methyltransferase compare
HGI48_RS18245 -1.1 -4.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS17770 -1.1 -1.4 DeoR/GlpR transcriptional regulator compare
HGI48_RS06630 -1.1 -2.5 galactose-1-phosphate uridylyltransferase compare
HGI48_RS15175 -1.1 -1.6 peptidylprolyl isomerase B compare
HGI48_RS10075 -1.1 -6.0 MAPEG family protein compare
HGI48_RS12865 -1.1 -3.4 AI-2E family transporter YdiK compare
HGI48_RS19940 -1.1 -6.5 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HGI48_RS04450 -1.1 -3.1 cysteine synthase A compare
HGI48_RS10135 -1.0 -1.9 murein DD-endopeptidase MepM compare
HGI48_RS03555 -1.0 -1.6 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
HGI48_RS06340 -1.0 -5.4 asparagine synthase B compare
HGI48_RS05700 -1.0 -1.7 DNA-binding protein HU-beta compare
HGI48_RS08250 -1.0 -3.2 FadR family transcriptional regulator compare
HGI48_RS09735 -1.0 -2.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS15010 -1.0 -5.7 beta-galactosidase compare
HGI48_RS05790 -1.0 -5.2 multidrug efflux RND transporter permease subunit compare
HGI48_RS21210 -1.0 -2.9 D-tyrosyl-tRNA(Tyr) deacylase compare
HGI48_RS14350 -1.0 -2.5 acetate kinase compare
HGI48_RS06635 -1.0 -5.1 UDP-glucose 4-epimerase GalE compare
HGI48_RS00755 -1.0 -2.8 putative lipopolysaccharide heptosyltransferase III compare
HGI48_RS18175 -1.0 -1.4 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA compare
HGI48_RS08000 -1.0 -2.6 type VI secretion system-associated protein TagO compare
HGI48_RS14610 -1.0 -2.3 Fe(3+)-siderophore ABC transporter permease compare
HGI48_RS06675 -1.0 -4.3 6-phosphogluconolactonase compare
HGI48_RS11310 -1.0 -6.5 TerC family protein compare
HGI48_RS15960 -1.0 -1.8 helix-turn-helix domain-containing protein compare
HGI48_RS18020 -1.0 -1.8 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS09265 -0.9 -2.3 1-phosphofructokinase compare
HGI48_RS15185 -0.9 -1.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS05655 -0.9 -3.8 cytochrome o ubiquinol oxidase subunit I compare
HGI48_RS08320 -0.9 -2.8 S26 family signal peptidase compare
HGI48_RS18125 -0.9 -2.4 acetolactate synthase small subunit compare
HGI48_RS10975 -0.9 -3.0 redox-regulated ATPase YchF compare
HGI48_RS13620 -0.9 -2.1 protein DsrB compare
HGI48_RS11645 -0.9 -2.3 CesT family type III secretion system chaperone compare
HGI48_RS06515 -0.9 -1.1 succinate--CoA ligase subunit alpha compare
HGI48_RS21375 -0.9 -2.0 FMN-binding protein MioC compare
HGI48_RS06065 -0.9 -2.7 phosphoribosylglycinamide formyltransferase compare
HGI48_RS18070 -0.9 -3.3 3-isopropylmalate dehydratase small subunit compare
HGI48_RS19070 -0.9 -2.6 fumarate reductase subunit FrdC compare
HGI48_RS18065 -0.9 -5.0 3-isopropylmalate dehydratase large subunit compare
HGI48_RS13200 -0.9 -3.0 phosphate acyltransferase PlsX compare
HGI48_RS15805 -0.9 -1.7 pyridoxine 5'-phosphate synthase compare
HGI48_RS06280 -0.9 -2.0 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS21020 -0.9 -4.2 inorganic phosphate transporter PitA compare
HGI48_RS12630 -0.9 -1.4 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS05690 -0.9 -1.9 ATP-dependent protease ATP-binding subunit ClpX compare
HGI48_RS13645 -0.9 -1.5 phage holin family protein compare
HGI48_RS17135 -0.9 -2.3 FlxA-like family protein compare
HGI48_RS05740 -0.9 -3.6 P-II family nitrogen regulator compare
HGI48_RS18550 -0.9 -1.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HGI48_RS03325 -0.9 -2.5 purine-nucleoside phosphorylase compare
HGI48_RS14445 -0.9 -2.0 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS12720 -0.8 -2.7 EthD family reductase compare
HGI48_RS18060 -0.8 -4.3 3-isopropylmalate dehydrogenase compare
HGI48_RS20735 -0.8 -2.0 aspartate 1-decarboxylase autocleavage activator PanM compare
HGI48_RS02940 -0.8 -2.6 phosphoadenosine phosphosulfate reductase family protein compare
HGI48_RS21265 -0.8 -3.7 thiol:disulfide interchange protein DsbA compare
HGI48_RS10500 -0.8 -3.6 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS14435 -0.8 -0.9 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS18560 -0.8 -1.9 N-acetylmuramoyl-L-alanine amidase AmiB compare
HGI48_RS16680 -0.8 -1.3 acireductone dioxygenase compare
HGI48_RS18240 -0.8 -5.0 carbamoyl-phosphate synthase large subunit compare
HGI48_RS19855 -0.8 -5.5 1,4-alpha-glucan branching protein GlgB compare
HGI48_RS09520 -0.8 -3.6 arginine ABC transporter permease ArtQ compare
HGI48_RS11905 -0.8 -2.1 transposase compare
HGI48_RS20600 -0.8 -1.9 envelope stress sensor histidine kinase CpxA compare
HGI48_RS15830 -0.8 -4.2 elongation factor 4 compare
HGI48_RS01445 -0.8 -2.2 RNA polymerase factor sigma-54 compare
HGI48_RS12060 -0.8 -0.7 RNA chaperone ProQ compare
HGI48_RS02040 -0.8 -2.7 GNAT family N-acetyltransferase compare
HGI48_RS05455 -0.8 -1.7 pyrimidine/purine nucleoside phosphorylase compare
HGI48_RS09730 -0.8 -3.3 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS09210 -0.8 -1.8 hypothetical protein compare
HGI48_RS10245 -0.8 -1.3 GlsB/YeaQ/YmgE family stress response membrane protein compare
HGI48_RS13545 -0.8 -2.3 flagellar protein FlhE compare
HGI48_RS18605 -0.8 -3.2 ABC transporter ATP-binding protein compare
HGI48_RS00915 -0.8 -2.1 Sec-independent protein translocase subunit TatB compare
HGI48_RS20810 -0.8 -5.1 2-dehydro-3-deoxygluconokinase compare
HGI48_RS04315 -0.8 -2.8 outer membrane protein assembly factor BamE compare
HGI48_RS05640 -0.8 -2.1 protoheme IX farnesyltransferase compare
HGI48_RS18340 -0.8 -1.8 homoserine kinase compare
HGI48_RS05650 -0.8 -1.2 cytochrome o ubiquinol oxidase subunit III compare
HGI48_RS03685 -0.8 -1.6 GNAT family N-acetyltransferase compare
HGI48_RS14405 -0.8 -4.5 amidophosphoribosyltransferase compare
HGI48_RS01715 -0.8 -3.5 tol-pal system-associated acyl-CoA thioesterase compare
HGI48_RS14615 -0.8 -2.4 iron-enterobactin ABC transporter permease compare
HGI48_RS15865 -0.8 -5.1 ATP-dependent RNA helicase SrmB compare
HGI48_RS02490 -0.8 -3.4 LysR family transcriptional regulator compare
HGI48_RS13210 -0.8 -1.2 23S rRNA accumulation protein YceD compare
HGI48_RS20400 -0.8 -2.7 Si-specific NAD(P)(+) transhydrogenase compare
HGI48_RS21235 -0.8 -4.0 nitrogen regulation protein NR(I) compare
HGI48_RS14630 -0.7 -2.4 MbtH family NRPS accessory protein compare
HGI48_RS05535 -0.7 -0.7 preprotein translocase subunit YajC compare
HGI48_RS05200 -0.7 -1.5 VOC family protein compare
HGI48_RS16355 -0.7 -1.1 recombinase RecA compare
HGI48_RS20015 -0.7 -2.4 thioesterase family protein compare
HGI48_RS17485 -0.7 -3.6 diaminopimelate decarboxylase compare
HGI48_RS09090 -0.7 -1.5 CopG family ribbon-helix-helix protein compare
HGI48_RS03940 -0.7 -2.1 EexN family lipoprotein compare
HGI48_RS05860 -0.7 -2.5 Kef family K(+) transporter compare
HGI48_RS01050 -0.7 -1.1 tRNA-Thr compare
HGI48_RS00910 -0.7 -2.1 Sec-independent protein translocase subunit TatA compare
HGI48_RS07875 -0.7 -2.1 metal ABC transporter permease compare
HGI48_RS20475 -0.7 -2.8 cell division protein ZapB compare
HGI48_RS15230 -0.7 -4.0 exopolyphosphatase compare
HGI48_RS14200 -0.7 -1.5 hydrogenase maturation nickel metallochaperone HypA compare
HGI48_RS19840 -0.7 -4.6 glycogen synthase GlgA compare
HGI48_RS04320 -0.7 -2.5 DNA repair protein RecN compare
HGI48_RS02745 -0.7 -3.8 pirin family protein compare
HGI48_RS03305 -0.7 -2.1 GIY-YIG nuclease family protein compare
HGI48_RS18615 -0.7 -2.4 hypothetical protein compare
HGI48_RS12670 -0.7 -2.1 Grx4 family monothiol glutaredoxin compare
HGI48_RS18030 -0.7 -3.7 catabolite repressor/activator compare
HGI48_RS14525 -0.7 -1.6 penicillin-insensitive murein endopeptidase compare
HGI48_RS08960 -0.7 -2.3 hypothetical protein compare
HGI48_RS03520 -0.7 -2.3 sugar transferase compare
HGI48_RS05680 -0.7 -3.0 trigger factor compare
HGI48_RS12890 -0.7 -2.5 membrane integrity-associated transporter subunit PqiC compare
HGI48_RS04305 -0.7 -1.3 type II toxin-antitoxin system RatA family toxin compare
HGI48_RS09525 -0.7 -2.3 arginine ABC transporter substrate-binding protein compare
HGI48_RS10540 -0.7 -4.0 HTH-type transcriptional regulator CysB compare
HGI48_RS10520 -0.7 -1.9 hypothetical protein compare
HGI48_RS06625 -0.7 -3.7 galactokinase compare
HGI48_RS09740 -0.7 -1.9 histidinol-phosphate transaminase compare
HGI48_RS08620 -0.7 -1.5 NAD(P)H-dependent oxidoreductase compare
HGI48_RS16450 -0.7 -2.1 GTPase compare
HGI48_RS14510 -0.7 -1.4 YfcL family protein compare
HGI48_RS17345 -0.7 -2.0 YggS family pyridoxal phosphate-dependent enzyme compare
HGI48_RS05070 -0.7 -3.0 LOG family protein compare
HGI48_RS00740 -0.7 -2.2 glycosyltransferase family 9 protein compare
HGI48_RS17595 -0.7 -3.5 aspartate/tyrosine/aromatic aminotransferase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in plant experiments

For plant cv.Upstate across organisms