Experiment setATCH235 for Dickeya dianthicola 67-19

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
HGI48_RS14305 -3.4 -2.4 NADH-quinone oxidoreductase subunit B compare
HGI48_RS10430 -3.0 -4.9 TonB system transport protein TonB compare
HGI48_RS10170 -2.8 -6.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS04970 -2.4 -4.3 thymidylate synthase compare
HGI48_RS18520 -2.4 -2.6 adenylosuccinate synthase compare
HGI48_RS11310 -2.3 -13.8 TerC family protein compare
HGI48_RS12580 -2.3 -10.8 orotidine-5'-phosphate decarboxylase compare
HGI48_RS14270 -2.2 -1.8 NADH-quinone oxidoreductase subunit J compare
HGI48_RS19055 -2.2 -2.3 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS14260 -2.1 -2.7 NADH-quinone oxidoreductase subunit L compare
HGI48_RS06120 -2.1 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS13235 -2.1 -8.8 dihydroorotase compare
HGI48_RS04435 -2.1 -2.0 PTS glucose transporter subunit IIA compare
HGI48_RS15190 -2.1 -6.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS12925 -2.1 -7.8 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS02290 -2.1 -2.6 hypothetical protein compare
HGI48_RS13275 -2.0 -12.6 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS13040 -2.0 -4.3 hypothetical protein compare
HGI48_RS15535 -1.9 -7.6 IMP dehydrogenase compare
HGI48_RS20045 -1.9 -3.5 tyrosine recombinase XerC compare
HGI48_RS13280 -1.9 -11.5 glucan biosynthesis protein G compare
HGI48_RS14285 -1.9 -1.8 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS16050 -1.8 -1.7 RNA polymerase-binding protein DksA compare
HGI48_RS18240 -1.8 -9.6 carbamoyl-phosphate synthase large subunit compare
HGI48_RS18400 -1.8 -5.8 phosphoglycerate dehydrogenase compare
HGI48_RS06550 -1.8 -2.5 colicin uptake protein TolR compare
HGI48_RS02385 -1.7 -6.5 phosphoserine phosphatase compare
HGI48_RS21430 -1.7 -2.6 F0F1 ATP synthase subunit epsilon compare
HGI48_RS03265 -1.7 -4.7 lipoprotein NlpI compare
HGI48_RS18070 -1.7 -5.0 3-isopropylmalate dehydratase small subunit compare
HGI48_RS20750 -1.7 -1.7 cell division ATP-binding protein FtsE compare
HGI48_RS15750 -1.6 -11.8 phosphoribosylformylglycinamidine synthase compare
HGI48_RS15185 -1.6 -2.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS17565 -1.6 -5.5 alanine racemase compare
HGI48_RS18245 -1.6 -6.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS20560 -1.6 -4.0 methyltransferase domain-containing protein compare
HGI48_RS03520 -1.6 -5.8 sugar transferase compare
HGI48_RS01210 -1.6 -7.7 phosphoribosylamine--glycine ligase compare
HGI48_RS13210 -1.5 -3.6 23S rRNA accumulation protein YceD compare
HGI48_RS07055 -1.5 -1.6 IS481 family transposase compare
HGI48_RS09310 -1.4 -2.3 acyl carrier protein compare
HGI48_RS01215 -1.4 -5.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS17225 -1.4 -4.7 HlyC/CorC family transporter compare
HGI48_RS18600 -1.4 -4.9 ABC transporter permease compare
HGI48_RS19090 -1.4 -3.0 EF-P beta-lysylation protein EpmB compare
HGI48_RS14405 -1.4 -8.2 amidophosphoribosyltransferase compare
HGI48_RS10090 -1.4 -3.1 dihydroneopterin triphosphate diphosphatase compare
HGI48_RS10650 -1.3 -4.5 mannose-6-phosphate isomerase compare
HGI48_RS20545 -1.3 -2.8 NUDIX domain-containing protein compare
HGI48_RS03900 -1.3 -2.4 hypothetical protein compare
HGI48_RS07925 -1.3 -1.8 TetR/AcrR family transcriptional regulator compare
HGI48_RS01290 -1.3 -3.2 DNA-binding transcriptional regulator Fis compare
HGI48_RS10335 -1.3 -5.0 formyltetrahydrofolate deformylase compare
HGI48_RS10975 -1.3 -4.4 redox-regulated ATPase YchF compare
HGI48_RS15175 -1.3 -1.9 peptidylprolyl isomerase B compare
HGI48_RS01715 -1.3 -5.7 tol-pal system-associated acyl-CoA thioesterase compare
HGI48_RS00680 -1.3 -2.5 orotate phosphoribosyltransferase compare
HGI48_RS10075 -1.3 -6.6 MAPEG family protein compare
HGI48_RS14035 -1.3 -2.1 LD-carboxypeptidase compare
HGI48_RS17005 -1.3 -3.2 phosphoadenylyl-sulfate reductase compare
HGI48_RS10550 -1.2 -2.5 electron transport complex subunit E compare
HGI48_RS08000 -1.2 -2.8 type VI secretion system-associated protein TagO compare
HGI48_RS12920 -1.2 -2.4 cell division protein ZapC compare
HGI48_RS21220 -1.2 -4.2 ribosome-dependent GTPase TypA compare
HGI48_RS03685 -1.2 -2.3 GNAT family N-acetyltransferase compare
HGI48_RS12000 -1.2 -2.6 respiratory nitrate reductase subunit gamma compare
HGI48_RS19430 -1.2 -2.3 sulfurtransferase complex subunit TusC compare
HGI48_RS03440 -1.2 -1.2 site-specific tyrosine recombinase XerD compare
HGI48_RS06675 -1.1 -5.0 6-phosphogluconolactonase compare
HGI48_RS18610 -1.1 -2.8 GDP-L-fucose synthase compare
HGI48_RS19095 -1.1 -2.4 DUF4156 domain-containing protein compare
HGI48_RS17025 -1.1 -2.1 hypothetical protein compare
HGI48_RS06085 -1.1 -1.9 DnaA inactivator Hda compare
HGI48_RS18605 -1.1 -3.9 ABC transporter ATP-binding protein compare
HGI48_RS05790 -1.1 -6.7 multidrug efflux RND transporter permease subunit compare
HGI48_RS06070 -1.1 -4.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS13650 -1.1 -1.2 glycoside hydrolase family 104 protein compare
HGI48_RS01590 -1.1 -1.5 divisome-associated lipoprotein YraP compare
HGI48_RS06545 -1.1 -2.4 Tol-Pal system protein TolQ compare
HGI48_RS00800 -1.1 -2.1 serine O-acetyltransferase compare
HGI48_RS16605 -1.1 -2.0 glutamate 5-kinase compare
HGI48_RS19930 -1.1 -3.9 CpmJ protein compare
HGI48_RS15580 -1.1 -2.6 cytoskeleton protein RodZ compare
HGI48_RS00960 -1.1 -2.2 YeeE/YedE family protein compare
HGI48_RS15010 -1.0 -7.0 beta-galactosidase compare
HGI48_RS04315 -1.0 -4.3 outer membrane protein assembly factor BamE compare
HGI48_RS16945 -1.0 -2.0 RNA polymerase sigma factor RpoS compare
HGI48_RS20035 -1.0 -3.3 DNA helicase II compare
HGI48_RS05795 -1.0 -5.0 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS01445 -1.0 -2.5 RNA polymerase factor sigma-54 compare
HGI48_RS20600 -1.0 -2.7 envelope stress sensor histidine kinase CpxA compare
HGI48_RS19720 -1.0 -1.6 intracellular growth attenuator family protein compare
HGI48_RS14350 -1.0 -3.5 acetate kinase compare
HGI48_RS03510 -1.0 -6.3 polysaccharide biosynthesis protein compare
HGI48_RS01900 -1.0 -4.1 aspartate carbamoyltransferase compare
HGI48_RS11110 -1.0 -2.2 CesT family type III secretion system chaperone compare
HGI48_RS09745 -1.0 -2.7 histidinol dehydrogenase compare
HGI48_RS00925 -1.0 -3.1 3'-5' ssDNA/RNA exonuclease TatD compare
HGI48_RS06515 -1.0 -1.7 succinate--CoA ligase subunit alpha compare
HGI48_RS18030 -1.0 -6.0 catabolite repressor/activator compare
HGI48_RS20580 -1.0 -1.5 transposase compare
HGI48_RS18835 -1.0 -0.8 nitrogen fixation protein NifM compare
HGI48_RS09530 -0.9 -2.6 arginine ABC transporter ATP-binding protein ArtP compare
HGI48_RS18075 -0.9 -1.6 siderophore-interacting protein compare
HGI48_RS18550 -0.9 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HGI48_RS20230 -0.9 -4.3 exopolyphosphatase compare
HGI48_RS19785 -0.9 -1.3 Fe-S biogenesis protein NfuA compare
HGI48_RS14615 -0.9 -2.2 iron-enterobactin ABC transporter permease compare
HGI48_RS04440 -0.9 -3.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HGI48_RS13175 -0.9 -3.2 beta-ketoacyl-ACP synthase II compare
HGI48_RS19750 -0.9 -2.5 two-component system response regulator OmpR compare
HGI48_RS21020 -0.9 -4.8 inorganic phosphate transporter PitA compare
HGI48_RS06700 -0.9 -2.8 iron-sulfur cluster carrier protein ApbC compare
HGI48_RS07860 -0.9 -1.5 malonate decarboxylase subunit epsilon compare
HGI48_RS02790 -0.9 -2.9 transcriptional regulator ExuR compare
HGI48_RS00095 -0.9 -1.3 PAS domain-containing protein compare
HGI48_RS13545 -0.9 -2.1 flagellar protein FlhE compare
HGI48_RS00685 -0.9 -2.3 nucleoid occlusion factor SlmA compare
HGI48_RS02495 -0.9 -2.3 aromatic ring-hydroxylating dioxygenase subunit alpha compare
HGI48_RS09600 -0.9 -2.9 thioredoxin-disulfide reductase compare
HGI48_RS15865 -0.9 -5.9 ATP-dependent RNA helicase SrmB compare
HGI48_RS18020 -0.9 -1.7 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS18615 -0.9 -2.7 hypothetical protein compare
HGI48_RS00540 -0.8 -2.6 YicC family protein compare
HGI48_RS09630 -0.8 -2.4 Tat proofreading chaperone DmsD compare
HGI48_RS18510 -0.8 -6.0 class 1 fructose-bisphosphatase compare
HGI48_RS18125 -0.8 -2.3 acetolactate synthase small subunit compare
HGI48_RS08555 -0.8 -1.0 helix-turn-helix domain-containing protein compare
HGI48_RS01410 -0.8 -1.2 ribosome-associated protein compare
HGI48_RS16005 -0.8 -5.3 dGTPase compare
HGI48_RS16170 -0.8 -2.3 ribonuclease HI compare
HGI48_RS13395 -0.8 -2.2 flagellar export chaperone FliS compare
HGI48_RS17775 -0.8 -2.0 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS21235 -0.8 -3.8 nitrogen regulation protein NR(I) compare
HGI48_RS03135 -0.8 -1.4 malate dehydrogenase compare
HGI48_RS00155 -0.8 -1.6 ABC transporter permease compare
HGI48_RS13570 -0.8 -3.8 chemotaxis response regulator protein-glutamate methylesterase compare
HGI48_RS11205 -0.8 -4.2 fatty acid metabolism transcriptional regulator FadR compare
HGI48_RS05650 -0.8 -1.5 cytochrome o ubiquinol oxidase subunit III compare
HGI48_RS05325 -0.8 -3.1 GNAT family N-acetyltransferase compare
HGI48_RS13975 -0.8 -3.5 DNA cytosine methyltransferase compare
HGI48_RS06475 -0.8 -0.8 citrate synthase compare
HGI48_RS12200 -0.8 -3.0 phage tail sheath protein compare
HGI48_RS05640 -0.8 -2.7 protoheme IX farnesyltransferase compare
HGI48_RS08450 -0.8 -2.0 conjugal transfer protein TrbF compare
HGI48_RS00515 -0.8 -1.9 LuxR family transcriptional regulator compare
HGI48_RS14610 -0.8 -1.9 Fe(3+)-siderophore ABC transporter permease compare
HGI48_RS12660 -0.8 -2.2 lactoylglutathione lyase compare
HGI48_RS06630 -0.8 -1.6 galactose-1-phosphate uridylyltransferase compare
HGI48_RS08380 -0.8 -4.6 DNA sulfur modification protein DndB compare
HGI48_RS06340 -0.8 -4.2 asparagine synthase B compare
HGI48_RS14465 -0.8 -2.1 tripartite tricarboxylate transporter TctB family protein compare
HGI48_RS11530 -0.8 -1.0 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS13200 -0.8 -2.8 phosphate acyltransferase PlsX compare
HGI48_RS16100 -0.8 -2.7 hypoxanthine phosphoribosyltransferase compare
HGI48_RS12560 -0.8 -3.6 2-keto-3-deoxygluconate transporter compare
HGI48_RS05695 -0.7 -4.3 endopeptidase La compare
HGI48_RS20890 -0.7 -2.0 hypothetical protein compare
HGI48_RS02025 -0.7 -1.3 DNA-binding transcriptional regulator compare
HGI48_RS12570 -0.7 -1.9 osmotically-inducible lipoprotein OsmB compare
HGI48_RS09460 -0.7 -1.2 glutaredoxin, GrxA family compare
HGI48_RS18065 -0.7 -4.3 3-isopropylmalate dehydratase large subunit compare
HGI48_RS05455 -0.7 -2.0 pyrimidine/purine nucleoside phosphorylase compare
HGI48_RS19940 -0.7 -4.6 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HGI48_RS11490 -0.7 -3.1 DNA-binding transcriptional regulator KdgR compare
HGI48_RS15470 -0.7 -1.9 type II secretion system minor pseudopilin GspI compare
HGI48_RS09730 -0.7 -2.0 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS18910 -0.7 -2.1 nitrogen fixation protein NifY compare
HGI48_RS08300 -0.7 -2.2 CcdB family protein compare
HGI48_RS01480 -0.7 -2.5 phospholipid ABC transporter ATP-binding protein MlaF compare
HGI48_RS06635 -0.7 -3.8 UDP-glucose 4-epimerase GalE compare
HGI48_RS04305 -0.7 -1.5 type II toxin-antitoxin system RatA family toxin compare
HGI48_RS02905 -0.7 -1.2 phage regulatory CII family protein compare
HGI48_RS18210 -0.7 -1.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HGI48_RS03450 -0.7 -2.2 single-stranded-DNA-specific exonuclease RecJ compare
HGI48_RS11645 -0.7 -2.0 CesT family type III secretion system chaperone compare
HGI48_RS01050 -0.7 -1.0 tRNA-Thr compare
HGI48_RS11630 -0.7 -1.3 hypothetical protein compare
HGI48_RS18585 -0.7 -4.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
HGI48_RS00200 -0.7 -2.0 DNA-3-methyladenine glycosylase I compare
HGI48_RS10500 -0.7 -4.0 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS00735 -0.7 -1.0 glycosyltransferase family 4 protein compare
HGI48_RS10165 -0.7 -3.6 glucose-6-phosphate dehydrogenase compare
HGI48_RS12630 -0.7 -0.9 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS19855 -0.7 -4.7 1,4-alpha-glucan branching protein GlgB compare
HGI48_RS08780 -0.7 -2.2 secretion protein HlyD compare
HGI48_RS10575 -0.7 -1.2 electron transport complex subunit RsxA compare
HGI48_RS05910 -0.7 -1.5 2Fe-2S ferredoxin-like protein compare
HGI48_RS18810 -0.7 -2.3 radical SAM protein compare
HGI48_RS20050 -0.7 -2.9 DUF484 domain-containing protein compare
HGI48_RS19100 -0.7 -4.1 glucose-6-phosphate isomerase compare
HGI48_RS19070 -0.7 -2.4 fumarate reductase subunit FrdC compare
HGI48_RS18845 -0.7 -1.2 nitrogen fixation protein NifW compare
HGI48_RS10520 -0.7 -1.5 hypothetical protein compare
HGI48_RS02265 -0.7 -2.6 HD domain-containing protein compare
HGI48_RS01635 -0.7 -1.6 outer membrane channel protein TolC compare
HGI48_RS01485 -0.7 -2.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
HGI48_RS06625 -0.7 -3.9 galactokinase compare
HGI48_RS19965 -0.7 -2.0 glycerol-3-phosphate dehydrogenase subunit GlpB compare
HGI48_RS18055 -0.7 -5.0 2-isopropylmalate synthase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in plant experiments

For plant cv.Upstate across organisms