Experiment setATCH234 for Dickeya dianthicola 67-19

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
HGI48_RS06775 -4.8 -3.2 glycosyltransferase family 2 protein compare
HGI48_RS10170 -3.4 -6.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS14270 -3.0 -2.5 NADH-quinone oxidoreductase subunit J compare
HGI48_RS04435 -2.6 -2.9 PTS glucose transporter subunit IIA compare
HGI48_RS10140 -2.5 -4.3 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS20560 -2.2 -6.4 methyltransferase domain-containing protein compare
HGI48_RS06475 -2.2 -2.6 citrate synthase compare
HGI48_RS18400 -2.2 -7.9 phosphoglycerate dehydrogenase compare
HGI48_RS19720 -2.1 -3.1 intracellular growth attenuator family protein compare
HGI48_RS13275 -2.0 -11.1 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS15535 -2.0 -9.1 IMP dehydrogenase compare
HGI48_RS13280 -1.9 -10.4 glucan biosynthesis protein G compare
HGI48_RS03265 -1.9 -4.9 lipoprotein NlpI compare
HGI48_RS02290 -1.9 -4.6 hypothetical protein compare
HGI48_RS19090 -1.9 -3.3 EF-P beta-lysylation protein EpmB compare
HGI48_RS18610 -1.9 -4.6 GDP-L-fucose synthase compare
HGI48_RS01210 -1.8 -9.7 phosphoribosylamine--glycine ligase compare
HGI48_RS18520 -1.8 -2.4 adenylosuccinate synthase compare
HGI48_RS10430 -1.8 -3.9 TonB system transport protein TonB compare
HGI48_RS11375 -1.8 -4.3 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS12865 -1.8 -4.4 AI-2E family transporter YdiK compare
HGI48_RS11310 -1.7 -10.7 TerC family protein compare
HGI48_RS18600 -1.7 -5.7 ABC transporter permease compare
HGI48_RS14285 -1.7 -2.1 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS02385 -1.7 -5.3 phosphoserine phosphatase compare
HGI48_RS15185 -1.7 -0.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS07925 -1.7 -3.1 TetR/AcrR family transcriptional regulator compare
HGI48_RS18245 -1.7 -5.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS20045 -1.7 -5.0 tyrosine recombinase XerC compare
HGI48_RS16355 -1.6 -2.5 recombinase RecA compare
HGI48_RS17775 -1.6 -4.6 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS12580 -1.6 -5.8 orotidine-5'-phosphate decarboxylase compare
HGI48_RS17565 -1.5 -5.3 alanine racemase compare
HGI48_RS12925 -1.5 -5.3 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS06120 -1.5 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS02995 -1.5 -3.6 head completion/stabilization protein compare
HGI48_RS12055 -1.4 -3.7 carboxy terminal-processing peptidase compare
HGI48_RS01900 -1.4 -7.6 aspartate carbamoyltransferase compare
HGI48_RS13650 -1.4 -1.7 glycoside hydrolase family 104 protein compare
HGI48_RS04970 -1.4 -3.1 thymidylate synthase compare
HGI48_RS18605 -1.4 -4.8 ABC transporter ATP-binding protein compare
HGI48_RS05790 -1.4 -9.2 multidrug efflux RND transporter permease subunit compare
HGI48_RS13235 -1.4 -6.4 dihydroorotase compare
HGI48_RS14680 -1.4 -1.3 membrane protein YpdK compare
HGI48_RS13395 -1.4 -3.1 flagellar export chaperone FliS compare
HGI48_RS15510 -1.4 -2.7 type II secretion system pilot lipoprotein GspS compare
HGI48_RS05390 -1.3 -1.8 alkylphosphonate utilization protein compare
HGI48_RS21220 -1.3 -4.2 ribosome-dependent GTPase TypA compare
HGI48_RS09460 -1.3 -1.9 glutaredoxin, GrxA family compare
HGI48_RS14260 -1.3 -1.7 NADH-quinone oxidoreductase subunit L compare
HGI48_RS20000 -1.3 -2.8 threonine export protein RhtC compare
HGI48_RS10245 -1.3 -2.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
HGI48_RS06085 -1.3 -2.8 DnaA inactivator Hda compare
HGI48_RS13210 -1.3 -2.8 23S rRNA accumulation protein YceD compare
HGI48_RS15010 -1.3 -7.6 beta-galactosidase compare
HGI48_RS06070 -1.3 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS08355 -1.3 -2.7 IS481 family transposase compare
HGI48_RS15190 -1.3 -4.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS00095 -1.3 -0.9 PAS domain-containing protein compare
HGI48_RS06545 -1.3 -3.0 Tol-Pal system protein TolQ compare
HGI48_RS05700 -1.2 -2.0 DNA-binding protein HU-beta compare
HGI48_RS09745 -1.2 -3.6 histidinol dehydrogenase compare
HGI48_RS20455 -1.2 -3.1 ATP-dependent protease subunit HslV compare
HGI48_RS15750 -1.2 -9.5 phosphoribosylformylglycinamidine synthase compare
HGI48_RS10335 -1.2 -5.9 formyltetrahydrofolate deformylase compare
HGI48_RS03510 -1.2 -8.8 polysaccharide biosynthesis protein compare
HGI48_RS19055 -1.2 -1.4 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS21430 -1.2 -1.8 F0F1 ATP synthase subunit epsilon compare
HGI48_RS10090 -1.2 -2.9 dihydroneopterin triphosphate diphosphatase compare
HGI48_RS00680 -1.2 -1.9 orotate phosphoribosyltransferase compare
HGI48_RS10075 -1.2 -5.9 MAPEG family protein compare
HGI48_RS00795 -1.2 -1.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
HGI48_RS01215 -1.2 -4.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS06550 -1.1 -2.3 colicin uptake protein TolR compare
HGI48_RS01720 -1.1 -2.0 TonB system transport protein ExbD compare
HGI48_RS20035 -1.1 -4.6 DNA helicase II compare
HGI48_RS20810 -1.1 -6.6 2-dehydro-3-deoxygluconokinase compare
HGI48_RS14405 -1.1 -7.2 amidophosphoribosyltransferase compare
HGI48_RS05795 -1.1 -5.0 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS19070 -1.1 -3.7 fumarate reductase subunit FrdC compare
HGI48_RS06635 -1.1 -5.7 UDP-glucose 4-epimerase GalE compare
HGI48_RS05535 -1.1 -1.0 preprotein translocase subunit YajC compare
HGI48_RS04315 -1.1 -4.2 outer membrane protein assembly factor BamE compare
HGI48_RS19435 -1.1 -0.9 sulfurtransferase complex subunit TusD compare
HGI48_RS09730 -1.1 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS03440 -1.0 -1.1 site-specific tyrosine recombinase XerD compare
HGI48_RS09740 -1.0 -3.4 histidinol-phosphate transaminase compare
HGI48_RS18550 -1.0 -2.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HGI48_RS21655 -1.0 -1.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS14435 -1.0 -1.5 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS03215 -1.0 -0.9 preprotein translocase subunit SecG compare
HGI48_RS21235 -1.0 -5.8 nitrogen regulation protein NR(I) compare
HGI48_RS14300 -1.0 -1.8 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS18240 -1.0 -5.5 carbamoyl-phosphate synthase large subunit compare
HGI48_RS14305 -1.0 -1.2 NADH-quinone oxidoreductase subunit B compare
HGI48_RS00785 -1.0 -1.9 rhodanese-like domain-containing protein compare
HGI48_RS13545 -1.0 -2.4 flagellar protein FlhE compare
HGI48_RS17090 -1.0 -3.7 2-hydroxy-3-oxopropionate reductase compare
HGI48_RS21020 -1.0 -4.3 inorganic phosphate transporter PitA compare
HGI48_RS18620 -1.0 -3.6 glycosyltransferase compare
HGI48_RS12040 -1.0 -2.5 two-component system response regulator NarL compare
HGI48_RS19750 -0.9 -2.5 two-component system response regulator OmpR compare
HGI48_RS17195 -0.9 -1.5 hypothetical protein compare
HGI48_RS03520 -0.9 -3.2 sugar transferase compare
HGI48_RS15865 -0.9 -6.2 ATP-dependent RNA helicase SrmB compare
HGI48_RS14350 -0.9 -2.8 acetate kinase compare
HGI48_RS18535 -0.9 -4.3 FtsH protease activity modulator HflK compare
HGI48_RS13975 -0.9 -3.7 DNA cytosine methyltransferase compare
HGI48_RS20780 -0.9 -2.0 sulfurtransferase TusA compare
HGI48_RS00700 -0.9 -2.8 DNA repair protein RadC compare
HGI48_RS06905 -0.9 -2.0 ABC transporter ATP-binding protein compare
HGI48_RS18030 -0.9 -5.3 catabolite repressor/activator compare
HGI48_RS20595 -0.9 -3.8 envelope stress response regulator transcription factor CpxR compare
HGI48_RS21375 -0.9 -2.7 FMN-binding protein MioC compare
HGI48_RS10650 -0.9 -3.6 mannose-6-phosphate isomerase compare
HGI48_RS10070 -0.9 -1.8 carboxy-S-adenosyl-L-methionine synthase CmoA compare
HGI48_RS13570 -0.9 -3.6 chemotaxis response regulator protein-glutamate methylesterase compare
HGI48_RS09265 -0.9 -2.3 1-phosphofructokinase compare
HGI48_RS10480 -0.9 -3.0 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS09310 -0.9 -1.6 acyl carrier protein compare
HGI48_RS08890 -0.8 -1.6 DNA starvation/stationary phase protection protein Dps compare
HGI48_RS19940 -0.8 -5.4 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HGI48_RS20015 -0.8 -2.4 thioesterase family protein compare
HGI48_RS18595 -0.8 -4.4 GDP-mannose 4,6-dehydratase compare
HGI48_RS20230 -0.8 -4.0 exopolyphosphatase compare
HGI48_RS06065 -0.8 -2.6 phosphoribosylglycinamide formyltransferase compare
HGI48_RS12065 -0.8 -2.3 GAF domain-containing protein compare
HGI48_RS18835 -0.8 -0.7 nitrogen fixation protein NifM compare
HGI48_RS21615 -0.8 -2.7 4Fe-4S dicluster domain-containing protein compare
HGI48_RS10425 -0.8 -0.9 YciI family protein compare
HGI48_RS16945 -0.8 -1.7 RNA polymerase sigma factor RpoS compare
HGI48_RS18065 -0.8 -5.0 3-isopropylmalate dehydratase large subunit compare
HGI48_RS04440 -0.8 -2.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HGI48_RS15615 -0.8 -1.3 Fe-S cluster assembly protein IscX compare
HGI48_RS18020 -0.8 -1.9 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS06135 -0.8 -2.5 esterase compare
HGI48_RS05655 -0.8 -3.1 cytochrome o ubiquinol oxidase subunit I compare
HGI48_RS06270 -0.8 -3.0 glutamate/aspartate ABC transporter substrate-binding protein compare
HGI48_RS16605 -0.8 -1.9 glutamate 5-kinase compare
HGI48_RS04365 -0.8 -1.5 RpoE-regulated lipoprotein compare
HGI48_RS15830 -0.8 -4.2 elongation factor 4 compare
HGI48_RS00685 -0.8 -2.0 nucleoid occlusion factor SlmA compare
HGI48_RS00470 -0.8 -2.8 acyl-CoA dehydrogenase compare
HGI48_RS07055 -0.8 -1.2 IS481 family transposase compare
HGI48_RS15995 -0.8 -2.7 CdaR family transcriptional regulator compare
HGI48_RS17035 -0.8 -2.5 7-carboxy-7-deazaguanine synthase QueE compare
HGI48_RS13390 -0.8 -3.0 flagellar filament capping protein FliD compare
HGI48_RS14445 -0.8 -1.6 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS11950 -0.7 -2.6 type II toxin-antitoxin system prevent-host-death family antitoxin compare
HGI48_RS14970 -0.7 -1.6 hypothetical protein compare
HGI48_RS17345 -0.7 -1.9 YggS family pyridoxal phosphate-dependent enzyme compare
HGI48_RS08000 -0.7 -2.0 type VI secretion system-associated protein TagO compare
HGI48_RS05035 -0.7 -2.9 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
HGI48_RS20805 -0.7 -1.8 4-oxalocrotonate tautomerase family protein compare
HGI48_RS01445 -0.7 -1.8 RNA polymerase factor sigma-54 compare
HGI48_RS17930 -0.7 -1.4 8-oxo-dGTP diphosphatase MutT compare
HGI48_RS15795 -0.7 -2.6 YfhL family 4Fe-4S dicluster ferredoxin compare
HGI48_RS01635 -0.7 -1.8 outer membrane channel protein TolC compare
HGI48_RS02815 -0.7 -2.0 YgjV family protein compare
HGI48_RS05690 -0.7 -1.9 ATP-dependent protease ATP-binding subunit ClpX compare
HGI48_RS11905 -0.7 -1.7 transposase compare
HGI48_RS14200 -0.7 -1.4 hydrogenase maturation nickel metallochaperone HypA compare
HGI48_RS06515 -0.7 -1.6 succinate--CoA ligase subunit alpha compare
HGI48_RS13585 -0.7 -3.0 chemotaxis protein CheW compare
HGI48_RS03450 -0.7 -3.1 single-stranded-DNA-specific exonuclease RecJ compare
HGI48_RS10165 -0.7 -3.5 glucose-6-phosphate dehydrogenase compare
HGI48_RS19430 -0.7 -1.6 sulfurtransferase complex subunit TusC compare
HGI48_RS03065 -0.7 -2.8 phage major tail tube protein compare
HGI48_RS08690 -0.7 -2.6 ATP-dependent dethiobiotin synthetase BioD compare
HGI48_RS10470 -0.7 -4.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS02770 -0.7 -2.6 phage holin family protein compare
HGI48_RS19850 -0.7 -3.9 glycogen debranching protein GlgX compare
HGI48_RS07875 -0.7 -3.0 metal ABC transporter permease compare
HGI48_RS18585 -0.7 -4.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
HGI48_RS20600 -0.7 -1.9 envelope stress sensor histidine kinase CpxA compare
HGI48_RS01290 -0.7 -1.1 DNA-binding transcriptional regulator Fis compare
HGI48_RS00740 -0.7 -2.5 glycosyltransferase family 9 protein compare
HGI48_RS18075 -0.7 -1.3 siderophore-interacting protein compare
HGI48_RS19690 -0.7 -0.9 DUF2531 family protein compare
HGI48_RS12990 -0.7 -3.6 aspartate/tyrosine/aromatic aminotransferase compare
HGI48_RS10160 -0.7 -3.1 MurR/RpiR family transcriptional regulator compare
HGI48_RS00830 -0.7 -1.9 uridine phosphorylase compare
HGI48_RS05680 -0.7 -3.0 trigger factor compare
HGI48_RS13200 -0.7 -2.1 phosphate acyltransferase PlsX compare
HGI48_RS08655 -0.7 -3.3 CidB/LrgB family autolysis modulator compare
HGI48_RS20555 -0.7 -1.4 phage tail assembly chaperone compare
HGI48_RS06280 -0.7 -2.0 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS18615 -0.7 -2.4 hypothetical protein compare
HGI48_RS05530 -0.7 -2.6 tRNA guanosine(34) transglycosylase Tgt compare
HGI48_RS11245 -0.6 -2.5 septum site-determining protein MinD compare
HGI48_RS13045 -0.6 -1.5 NAD-dependent protein deacylase compare
HGI48_RS10135 -0.6 -1.2 murein DD-endopeptidase MepM compare
HGI48_RS11645 -0.6 -1.9 CesT family type III secretion system chaperone compare
HGI48_RS12630 -0.6 -0.9 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS16030 -0.6 -1.9 bifunctional glycosyl transferase/transpeptidase compare
HGI48_RS16050 -0.6 -0.5 RNA polymerase-binding protein DksA compare
HGI48_RS15985 -0.6 -2.3 sulfate ABC transporter permease subunit CysT compare
HGI48_RS16100 -0.6 -3.1 hypoxanthine phosphoribosyltransferase compare
HGI48_RS18180 -0.6 -2.4 co-chaperone DjlA compare
HGI48_RS15470 -0.6 -1.8 type II secretion system minor pseudopilin GspI compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in plant experiments

For plant cv.Upstate across organisms