Experiment setATCH233 for Dickeya dianthicola 67-19

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
HGI48_RS15185 -5.1 -3.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS04435 -3.7 -3.4 PTS glucose transporter subunit IIA compare
HGI48_RS14270 -3.1 -2.7 NADH-quinone oxidoreductase subunit J compare
HGI48_RS10170 -2.9 -6.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS16050 -2.7 -1.7 RNA polymerase-binding protein DksA compare
HGI48_RS18520 -2.6 -2.7 adenylosuccinate synthase compare
HGI48_RS02290 -2.6 -5.0 hypothetical protein compare
HGI48_RS10135 -2.6 -3.0 murein DD-endopeptidase MepM compare
HGI48_RS04970 -2.4 -4.3 thymidylate synthase compare
HGI48_RS10140 -2.2 -3.6 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS20045 -2.1 -4.6 tyrosine recombinase XerC compare
HGI48_RS14260 -2.1 -3.5 NADH-quinone oxidoreductase subunit L compare
HGI48_RS19090 -2.1 -2.9 EF-P beta-lysylation protein EpmB compare
HGI48_RS18400 -2.0 -6.3 phosphoglycerate dehydrogenase compare
HGI48_RS00680 -1.9 -3.3 orotate phosphoribosyltransferase compare
HGI48_RS12925 -1.9 -6.0 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS12580 -1.9 -7.5 orotidine-5'-phosphate decarboxylase compare
HGI48_RS02385 -1.9 -6.3 phosphoserine phosphatase compare
HGI48_RS13650 -1.9 -2.2 glycoside hydrolase family 104 protein compare
HGI48_RS10335 -1.9 -7.5 formyltetrahydrofolate deformylase compare
HGI48_RS21655 -1.8 -2.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS11310 -1.8 -10.6 TerC family protein compare
HGI48_RS01210 -1.8 -8.4 phosphoribosylamine--glycine ligase compare
HGI48_RS13275 -1.8 -11.5 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS16355 -1.8 -2.7 recombinase RecA compare
HGI48_RS19720 -1.8 -3.0 intracellular growth attenuator family protein compare
HGI48_RS13235 -1.8 -9.0 dihydroorotase compare
HGI48_RS06070 -1.8 -6.9 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS18245 -1.7 -6.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS13280 -1.7 -9.9 glucan biosynthesis protein G compare
HGI48_RS15535 -1.7 -7.1 IMP dehydrogenase compare
HGI48_RS06120 -1.7 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS10430 -1.7 -2.6 TonB system transport protein TonB compare
HGI48_RS01290 -1.6 -2.0 DNA-binding transcriptional regulator Fis compare
HGI48_RS10975 -1.6 -5.0 redox-regulated ATPase YchF compare
HGI48_RS19435 -1.6 -1.3 sulfurtransferase complex subunit TusD compare
HGI48_RS07925 -1.6 -4.8 TetR/AcrR family transcriptional regulator compare
HGI48_RS17565 -1.6 -5.3 alanine racemase compare
HGI48_RS12060 -1.6 -1.9 RNA chaperone ProQ compare
HGI48_RS03265 -1.5 -4.8 lipoprotein NlpI compare
HGI48_RS01215 -1.5 -5.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS06280 -1.5 -2.7 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS15750 -1.5 -11.5 phosphoribosylformylglycinamidine synthase compare
HGI48_RS10480 -1.5 -4.3 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS12630 -1.5 -2.1 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS04315 -1.5 -6.8 outer membrane protein assembly factor BamE compare
HGI48_RS14405 -1.4 -10.4 amidophosphoribosyltransferase compare
HGI48_RS17775 -1.4 -4.0 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS01900 -1.4 -7.1 aspartate carbamoyltransferase compare
HGI48_RS11530 -1.4 -2.9 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS00735 -1.4 -2.2 glycosyltransferase family 4 protein compare
HGI48_RS09735 -1.3 -3.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS10075 -1.3 -7.5 MAPEG family protein compare
HGI48_RS09600 -1.2 -5.0 thioredoxin-disulfide reductase compare
HGI48_RS21040 -1.2 -1.3 DUF1471 domain-containing protein compare
HGI48_RS10090 -1.2 -2.6 dihydroneopterin triphosphate diphosphatase compare
HGI48_RS18605 -1.2 -5.4 ABC transporter ATP-binding protein compare
HGI48_RS18240 -1.2 -6.8 carbamoyl-phosphate synthase large subunit compare
HGI48_RS20595 -1.2 -4.1 envelope stress response regulator transcription factor CpxR compare
HGI48_RS09745 -1.2 -3.7 histidinol dehydrogenase compare
HGI48_RS01590 -1.2 -1.4 divisome-associated lipoprotein YraP compare
HGI48_RS18340 -1.2 -3.3 homoserine kinase compare
HGI48_RS18550 -1.2 -2.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HGI48_RS03440 -1.2 -1.0 site-specific tyrosine recombinase XerD compare
HGI48_RS06085 -1.2 -2.5 DnaA inactivator Hda compare
HGI48_RS02765 -1.1 -2.8 YqjK-like family protein compare
HGI48_RS11645 -1.1 -3.0 CesT family type III secretion system chaperone compare
HGI48_RS20035 -1.1 -3.6 DNA helicase II compare
HGI48_RS05790 -1.1 -8.0 multidrug efflux RND transporter permease subunit compare
HGI48_RS17195 -1.1 -2.4 hypothetical protein compare
HGI48_RS18610 -1.1 -3.8 GDP-L-fucose synthase compare
HGI48_RS17770 -1.1 -1.9 DeoR/GlpR transcriptional regulator compare
HGI48_RS21220 -1.1 -3.2 ribosome-dependent GTPase TypA compare
HGI48_RS18070 -1.1 -3.7 3-isopropylmalate dehydratase small subunit compare
HGI48_RS15560 -1.1 -2.7 outer membrane protein assembly factor BamB compare
HGI48_RS20230 -1.1 -5.2 exopolyphosphatase compare
HGI48_RS08250 -1.1 -4.3 FadR family transcriptional regulator compare
HGI48_RS21375 -1.0 -2.3 FMN-binding protein MioC compare
HGI48_RS19750 -1.0 -2.8 two-component system response regulator OmpR compare
HGI48_RS19940 -1.0 -6.9 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HGI48_RS19930 -1.0 -3.6 CpmJ protein compare
HGI48_RS06515 -1.0 -2.2 succinate--CoA ligase subunit alpha compare
HGI48_RS12040 -1.0 -2.7 two-component system response regulator NarL compare
HGI48_RS06475 -1.0 -1.3 citrate synthase compare
HGI48_RS10465 -1.0 -6.6 tryptophan synthase subunit beta compare
HGI48_RS10500 -1.0 -4.5 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS21235 -1.0 -4.8 nitrogen regulation protein NR(I) compare
HGI48_RS14285 -1.0 -1.0 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS05535 -1.0 -1.0 preprotein translocase subunit YajC compare
HGI48_RS00125 -0.9 -2.1 DUF3861 domain-containing protein compare
HGI48_RS13210 -0.9 -2.7 23S rRNA accumulation protein YceD compare
HGI48_RS20050 -0.9 -4.0 DUF484 domain-containing protein compare
HGI48_RS06340 -0.9 -5.0 asparagine synthase B compare
HGI48_RS09090 -0.9 -1.7 CopG family ribbon-helix-helix protein compare
HGI48_RS14615 -0.9 -3.0 iron-enterobactin ABC transporter permease compare
HGI48_RS18125 -0.9 -2.1 acetolactate synthase small subunit compare
HGI48_RS06065 -0.9 -3.1 phosphoribosylglycinamide formyltransferase compare
HGI48_RS03215 -0.9 -1.0 preprotein translocase subunit SecG compare
HGI48_RS14305 -0.9 -1.3 NADH-quinone oxidoreductase subunit B compare
HGI48_RS06790 -0.9 -2.1 glycosyl transferase compare
HGI48_RS13975 -0.9 -4.0 DNA cytosine methyltransferase compare
HGI48_RS14035 -0.9 -1.9 LD-carboxypeptidase compare
HGI48_RS12570 -0.9 -2.6 osmotically-inducible lipoprotein OsmB compare
HGI48_RS13115 -0.9 -3.0 beta-N-acetylhexosaminidase compare
HGI48_RS05650 -0.9 -1.5 cytochrome o ubiquinol oxidase subunit III compare
HGI48_RS15190 -0.9 -3.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS15010 -0.9 -5.6 beta-galactosidase compare
HGI48_RS21020 -0.9 -4.9 inorganic phosphate transporter PitA compare
HGI48_RS20560 -0.9 -2.2 methyltransferase domain-containing protein compare
HGI48_RS16680 -0.9 -1.8 acireductone dioxygenase compare
HGI48_RS08775 -0.9 -2.7 ABC transporter ATP-binding protein compare
HGI48_RS01715 -0.9 -4.1 tol-pal system-associated acyl-CoA thioesterase compare
HGI48_RS18835 -0.9 -0.9 nitrogen fixation protein NifM compare
HGI48_RS20070 -0.9 -2.8 class I adenylate cyclase compare
HGI48_RS01445 -0.9 -2.3 RNA polymerase factor sigma-54 compare
HGI48_RS17205 -0.9 -3.7 gamma-glutamylcyclotransferase compare
HGI48_RS20600 -0.9 -2.7 envelope stress sensor histidine kinase CpxA compare
HGI48_RS06635 -0.9 -5.1 UDP-glucose 4-epimerase GalE compare
HGI48_RS18030 -0.9 -5.7 catabolite repressor/activator compare
HGI48_RS13390 -0.8 -3.6 flagellar filament capping protein FliD compare
HGI48_RS21205 -0.8 -2.8 fatty acid biosynthesis protein FabY compare
HGI48_RS18065 -0.8 -3.6 3-isopropylmalate dehydratase large subunit compare
HGI48_RS05795 -0.8 -4.3 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS10540 -0.8 -4.8 HTH-type transcriptional regulator CysB compare
HGI48_RS17345 -0.8 -2.5 YggS family pyridoxal phosphate-dependent enzyme compare
HGI48_RS17005 -0.8 -2.0 phosphoadenylyl-sulfate reductase compare
HGI48_RS09715 -0.8 -2.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HGI48_RS14610 -0.8 -2.4 Fe(3+)-siderophore ABC transporter permease compare
HGI48_RS08725 -0.8 -2.7 molybdopterin synthase catalytic subunit MoaE compare
HGI48_RS19055 -0.8 -1.4 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS15175 -0.8 -1.6 peptidylprolyl isomerase B compare
HGI48_RS03770 -0.8 -2.8 myo-inosose-2 dehydratase compare
HGI48_RS15865 -0.8 -6.0 ATP-dependent RNA helicase SrmB compare
HGI48_RS17030 -0.8 -1.9 6-carboxytetrahydropterin synthase QueD compare
HGI48_RS12865 -0.8 -2.3 AI-2E family transporter YdiK compare
HGI48_RS08165 -0.8 -2.2 GNAT family N-acetyltransferase compare
HGI48_RS00755 -0.8 -2.0 putative lipopolysaccharide heptosyltransferase III compare
HGI48_RS06700 -0.8 -2.9 iron-sulfur cluster carrier protein ApbC compare
HGI48_RS03450 -0.8 -2.3 single-stranded-DNA-specific exonuclease RecJ compare
HGI48_RS12720 -0.8 -2.4 EthD family reductase compare
HGI48_RS02940 -0.8 -2.8 phosphoadenosine phosphosulfate reductase family protein compare
HGI48_RS09740 -0.8 -2.6 histidinol-phosphate transaminase compare
HGI48_RS08320 -0.8 -2.5 S26 family signal peptidase compare
HGI48_RS07860 -0.8 -1.3 malonate decarboxylase subunit epsilon compare
HGI48_RS18600 -0.8 -3.3 ABC transporter permease compare
HGI48_RS02700 -0.8 -2.7 FxsA family protein compare
HGI48_RS06545 -0.7 -1.2 Tol-Pal system protein TolQ compare
HGI48_RS00960 -0.7 -2.1 YeeE/YedE family protein compare
HGI48_RS18060 -0.7 -3.0 3-isopropylmalate dehydrogenase compare
HGI48_RS03135 -0.7 -1.0 malate dehydrogenase compare
HGI48_RS10485 -0.7 -3.9 anthranilate synthase component 1 compare
HGI48_RS07980 -0.7 -2.4 type VI secretion system baseplate subunit TssK compare
HGI48_RS15830 -0.7 -4.0 elongation factor 4 compare
HGI48_RS08300 -0.7 -1.8 CcdB family protein compare
HGI48_RS10470 -0.7 -3.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS18345 -0.7 -4.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HGI48_RS01465 -0.7 -4.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
HGI48_RS18335 -0.7 -2.9 threonine synthase compare
HGI48_RS14350 -0.7 -1.7 acetate kinase compare
HGI48_RS00790 -0.7 -1.6 protein-export chaperone SecB compare
HGI48_RS18535 -0.7 -2.4 FtsH protease activity modulator HflK compare
HGI48_RS01690 -0.7 -3.1 2,5-didehydrogluconate reductase DkgA compare
HGI48_RS10995 -0.7 -1.5 IS21 family transposase compare
HGI48_RS00685 -0.7 -1.9 nucleoid occlusion factor SlmA compare
HGI48_RS04495 -0.7 -2.5 nitric oxide reductase transcriptional regulator NorR compare
HGI48_RS07055 -0.7 -1.1 IS481 family transposase compare
HGI48_RS03520 -0.7 -2.7 sugar transferase compare
HGI48_RS19440 -0.7 -2.2 transcriptional regulator compare
HGI48_RS05860 -0.7 -3.1 Kef family K(+) transporter compare
HGI48_RS20220 -0.7 -1.3 thioredoxin TrxA compare
HGI48_RS18175 -0.7 -1.4 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA compare
HGI48_RS10650 -0.7 -3.6 mannose-6-phosphate isomerase compare
HGI48_RS18055 -0.7 -4.9 2-isopropylmalate synthase compare
HGI48_RS04320 -0.7 -3.2 DNA repair protein RecN compare
HGI48_RS05655 -0.7 -2.6 cytochrome o ubiquinol oxidase subunit I compare
HGI48_RS08000 -0.7 -1.9 type VI secretion system-associated protein TagO compare
HGI48_RS08450 -0.7 -1.8 conjugal transfer protein TrbF compare
HGI48_RS10350 -0.6 -2.9 two-component system response regulator RssB compare
HGI48_RS05740 -0.6 -2.7 P-II family nitrogen regulator compare
HGI48_RS05735 -0.6 -4.7 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
HGI48_RS05325 -0.6 -2.8 GNAT family N-acetyltransferase compare
HGI48_RS21265 -0.6 -2.9 thiol:disulfide interchange protein DsbA compare
HGI48_RS21430 -0.6 -1.4 F0F1 ATP synthase subunit epsilon compare
HGI48_RS02790 -0.6 -2.3 transcriptional regulator ExuR compare
HGI48_RS20225 -0.6 -4.1 ATP-dependent RNA helicase RhlB compare
HGI48_RS05075 -0.6 -2.1 SecY-interacting protein compare
HGI48_RS06905 -0.6 -2.3 ABC transporter ATP-binding protein compare
HGI48_RS09730 -0.6 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS14445 -0.6 -1.4 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS19690 -0.6 -0.9 DUF2531 family protein compare
HGI48_RS17485 -0.6 -3.2 diaminopimelate decarboxylase compare
HGI48_RS13200 -0.6 -2.1 phosphate acyltransferase PlsX compare
HGI48_RS07295 -0.6 -2.5 addiction module antitoxin compare
HGI48_RS05640 -0.6 -1.8 protoheme IX farnesyltransferase compare
HGI48_RS14970 -0.6 -1.7 hypothetical protein compare
HGI48_RS10340 -0.6 -2.1 YchJ family protein compare
HGI48_RS04440 -0.6 -2.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HGI48_RS08365 -0.6 -2.1 DNA sulfur modification protein DndE compare
HGI48_RS10990 -0.6 -1.8 AAA family ATPase compare
HGI48_RS05660 -0.6 -1.6 cytochrome o ubiquinol oxidase subunit II compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in plant experiments

For plant cv.Upstate across organisms