Experiment setATCH233 for Dickeya dianthicola 67-19

Compare to:

Upstate

200 most detrimental genes:

  gene name fitness t score description  
HGI48_RS01985 +3.9 9.6 helix-turn-helix transcriptional regulator compare
HGI48_RS13605 +1.6 12.3 flagellar transcriptional regulator FlhC compare
HGI48_RS13610 +1.4 9.6 flagellar transcriptional regulator FlhD compare
HGI48_RS13600 +1.4 10.1 flagellar motor stator protein MotA compare
HGI48_RS12650 +1.3 8.8 transcriptional regulator SlyA compare
HGI48_RS10060 +1.2 2.9 hypothetical protein compare
HGI48_RS13920 +1.2 8.4 deoxyribonuclease compare
HGI48_RS18545 +1.1 5.9 RNA chaperone Hfq compare
HGI48_RS06075 +1.1 2.3 uracil phosphoribosyltransferase compare
HGI48_RS13515 +1.1 6.1 flagellar hook assembly protein FlgD compare
HGI48_RS13595 +1.1 6.6 flagellar motor protein MotB compare
HGI48_RS13525 +1.0 2.9 flagellar basal body rod protein FlgB compare
HGI48_RS20750 +1.0 2.1 cell division ATP-binding protein FtsE compare
HGI48_RS15770 +1.0 2.8 tryptophan synthase subunit beta compare
HGI48_RS00140 +0.9 1.7 putative FMN-dependent luciferase-like monooxygenase compare
HGI48_RS13495 +0.9 7.0 flagellar basal body L-ring protein FlgH compare
HGI48_RS13490 +0.9 5.0 flagellar basal body P-ring protein FlgI compare
HGI48_RS15565 +0.9 1.9 YfgM family protein compare
HGI48_RS13915 +0.9 6.6 hypothetical protein compare
HGI48_RS04355 +0.9 2.2 oxygen-dependent coproporphyrinogen oxidase compare
HGI48_RS21310 +0.9 8.1 ribose operon transcriptional repressor RbsR compare
HGI48_RS13925 +0.9 5.6 hypothetical protein compare
HGI48_RS13905 +0.9 5.6 hypothetical protein compare
HGI48_RS11220 +0.9 4.1 disulfide bond formation protein DsbB compare
HGI48_RS13450 +0.9 3.7 flagellar motor switch protein FliN compare
HGI48_RS21640 +0.8 3.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
HGI48_RS04135 +0.8 1.2 carboxymuconolactone decarboxylase family protein compare
HGI48_RS13530 +0.8 5.3 flagellar basal body P-ring formation protein FlgA compare
HGI48_RS13555 +0.8 6.8 flagellar type III secretion system protein FlhB compare
HGI48_RS13510 +0.8 6.6 flagellar hook protein FlgE compare
HGI48_RS05260 +0.8 1.6 transposase compare
HGI48_RS13455 +0.8 4.9 flagellar biosynthetic protein FliO compare
HGI48_RS13520 +0.8 4.1 flagellar basal body rod protein FlgC compare
HGI48_RS13415 +0.8 5.8 flagellar motor switch protein FliG compare
HGI48_RS13500 +0.8 4.1 flagellar basal-body rod protein FlgG compare
HGI48_RS13435 +0.8 5.3 flagellar hook-length control protein FliK compare
HGI48_RS13445 +0.8 5.5 flagellar motor switch protein FliM compare
HGI48_RS13465 +0.8 4.7 flagellar biosynthesis protein FliQ compare
HGI48_RS21720 +0.8 1.5 membrane protein insertion efficiency factor YidD compare
HGI48_RS14620 +0.8 1.1 ABC transporter ATP-binding protein compare
HGI48_RS13470 +0.8 6.0 flagellar type III secretion system protein FliR compare
HGI48_RS13550 +0.7 6.0 flagellar biosynthesis protein FlhA compare
HGI48_RS13285 +0.7 2.9 DUF2946 domain-containing protein compare
HGI48_RS13425 +0.7 5.9 flagellum-specific ATP synthase FliI compare
HGI48_RS04380 +0.7 2.3 GNAT family N-acetyltransferase compare
HGI48_RS04670 +0.7 1.3 transposase compare
HGI48_RS13505 +0.7 3.3 flagellar basal body rod protein FlgF compare
HGI48_RS21340 +0.7 2.6 YgiW/YdeI family stress tolerance OB fold protein compare
HGI48_RS08425 +0.7 3.0 TrbC/VirB2 family protein compare
HGI48_RS13910 +0.7 3.8 hypothetical protein compare
HGI48_RS13410 +0.7 5.7 flagellar M-ring protein FliF compare
HGI48_RS06345 +0.7 5.3 ROK family protein compare
HGI48_RS13385 +0.7 4.1 flagellin FliC compare
HGI48_RS00955 +0.6 1.5 helix-turn-helix transcriptional regulator compare
HGI48_RS13460 +0.6 4.9 flagellar type III secretion system pore protein FliP compare
HGI48_RS19245 +0.6 2.3 alternative ribosome-rescue factor A compare
HGI48_RS21315 +0.6 5.3 ribokinase compare
HGI48_RS15235 +0.6 2.3 DksA/TraR family C4-type zinc finger protein compare
HGI48_RS20265 +0.6 2.4 hypothetical protein compare
HGI48_RS13430 +0.6 3.6 flagella biosynthesis chaperone FliJ compare
HGI48_RS03725 +0.6 4.2 SIS domain-containing protein compare
HGI48_RS13440 +0.6 4.4 flagellar basal body-associated protein FliL compare
HGI48_RS04300 +0.6 1.3 SsrA-binding protein SmpB compare
HGI48_RS13485 +0.6 3.8 flagellar assembly peptidoglycan hydrolase FlgJ compare
HGI48_RS16560 +0.6 1.4 type I-E CRISPR-associated protein Cse2/CasB compare
HGI48_RS07830 +0.6 1.6 triphosphoribosyl-dephospho-CoA synthase compare
HGI48_RS09215 +0.6 1.7 microcin C ABC transporter ATP-binding protein YejF compare
HGI48_RS11210 +0.6 1.6 hypothetical protein compare
HGI48_RS08955 +0.6 2.0 hypothetical protein compare
HGI48_RS14935 +0.6 1.3 hypothetical protein compare
HGI48_RS13480 +0.6 4.4 flagellar hook-associated protein FlgK compare
HGI48_RS04820 +0.6 1.9 type II toxin-antitoxin system toxin CcdB compare
HGI48_RS17740 +0.6 2.4 glucosamine kinase compare
HGI48_RS13420 +0.6 3.1 flagellar assembly protein FliH compare
HGI48_RS15285 +0.6 2.3 DUF2057 family protein compare
HGI48_RS21320 +0.6 2.9 ribose ABC transporter substrate-binding protein RbsB compare
HGI48_RS19905 +0.6 2.5 asparagine synthase C-terminal domain-containing protein compare
HGI48_RS01100 +0.5 3.6 DUF1176 domain-containing protein compare
HGI48_RS09230 +0.5 4.1 ABC transporter substrate-binding protein compare
HGI48_RS07650 +0.5 1.4 hypothetical protein compare
HGI48_RS17585 +0.5 2.2 Lrp/AsnC family transcriptional regulator compare
HGI48_RS08530 +0.5 2.0 hypothetical protein compare
HGI48_RS04065 +0.5 1.1 DUF736 domain-containing protein compare
HGI48_RS10845 +0.5 3.0 ABC transporter permease subunit compare
HGI48_RS00490 +0.5 2.4 acyl carrier protein compare
HGI48_RS04720 +0.5 1.6 hypothetical protein compare
HGI48_RS13475 +0.5 3.4 flagellar hook-associated protein FlgL compare
HGI48_RS11690 +0.5 1.3 EscI/YscI/HrpB family type III secretion system inner rod protein compare
HGI48_RS04270 +0.5 1.5 hypothetical protein compare
HGI48_RS17025 +0.5 1.5 hypothetical protein compare
HGI48_RS19950 +0.5 2.6 pirin family protein compare
HGI48_RS12285 +0.5 1.0 ABC transporter ATP-binding protein compare
HGI48_RS10050 +0.5 1.3 VOC family protein compare
HGI48_RS02775 +0.5 0.8 DUF883 domain-containing protein compare
HGI48_RS14580 +0.5 1.0 tRNA-Arg compare
HGI48_RS09225 +0.5 2.5 microcin C ABC transporter permease YejB compare
HGI48_RS19020 +0.5 2.7 glutathione S-transferase family protein compare
HGI48_RS21045 +0.5 2.8 endonuclease/exonuclease/phosphatase family protein compare
HGI48_RS04980 +0.5 1.4 prepilin peptidase-dependent protein compare
HGI48_RS08900 +0.5 2.0 outer membrane protein OmpX compare
HGI48_RS07045 +0.5 2.3 transposase compare
HGI48_RS03515 +0.5 1.9 NAD-dependent epimerase/dehydratase family protein compare
HGI48_RS18480 +0.5 2.2 SprT family zinc-dependent metalloprotease compare
HGI48_RS09500 +0.5 2.0 DUF2593 family protein compare
HGI48_RS00430 +0.5 3.0 two-component system sensor histidine kinase VfmI compare
HGI48_RS13135 +0.5 1.9 purine nucleoside phosphoramidase compare
HGI48_RS18710 +0.5 2.3 ABC transporter substrate-binding protein compare
HGI48_RS08630 +0.5 2.4 acyl-CoA thioesterase compare
HGI48_RS01785 +0.5 1.9 MFS transporter compare
HGI48_RS11775 +0.5 3.2 peptide antibiotic transporter SbmA compare
HGI48_RS06290 +0.5 2.8 PhoH family protein compare
HGI48_RS20125 +0.5 2.3 nuclear transport factor 2 family protein compare
HGI48_RS00295 +0.5 1.1 hypothetical protein compare
HGI48_RS10095 +0.4 1.4 YebC/PmpR family DNA-binding transcriptional regulator compare
HGI48_RS18715 +0.4 1.8 ABC transporter substrate-binding protein compare
HGI48_RS02085 +0.4 2.0 amino acid transporter compare
HGI48_RS02905 +0.4 1.1 phage regulatory CII family protein compare
HGI48_RS02350 +0.4 2.0 Xaa-Pro aminopeptidase compare
HGI48_RS19585 +0.4 1.4 helix-turn-helix transcriptional regulator compare
HGI48_RS15195 +0.4 0.9 HAAAP family serine/threonine permease compare
HGI48_RS03300 +0.4 2.2 N-acetyltransferase compare
HGI48_RS01135 +0.4 2.3 heavy metal response regulator transcription factor compare
HGI48_RS13350 +0.4 1.8 RNA polymerase sigma factor FliA compare
HGI48_RS06255 +0.4 1.4 amino acid ABC transporter ATP-binding protein compare
HGI48_RS11605 +0.4 1.0 hypothetical protein compare
HGI48_RS01790 +0.4 1.9 dTDP-4-dehydrorhamnose 3,5-epimerase family protein compare
HGI48_RS14375 +0.4 1.7 TIGR01777 family protein compare
HGI48_RS14995 +0.4 1.9 LacI family DNA-binding transcriptional regulator compare
HGI48_RS17860 +0.4 2.4 hypothetical protein compare
HGI48_RS05940 +0.4 2.3 transcriptional regulator RcsB compare
HGI48_RS03185 +0.4 1.4 transcription elongation factor GreA compare
HGI48_RS16620 +0.4 1.7 YfiR family protein compare
HGI48_RS01980 +0.4 1.5 hypothetical protein compare
HGI48_RS11680 +0.4 1.5 serine kinase compare
HGI48_RS13405 +0.4 2.1 flagellar hook-basal body complex protein FliE compare
HGI48_RS07215 +0.4 1.7 DUF736 domain-containing protein compare
HGI48_RS18675 +0.4 1.8 biotin-dependent carboxyltransferase family protein compare
HGI48_RS11110 +0.4 1.0 CesT family type III secretion system chaperone compare
HGI48_RS10450 +0.4 2.7 outer membrane protein OmpW compare
HGI48_RS01105 +0.4 0.8 DUF1127 domain-containing protein compare
HGI48_RS13020 +0.4 1.8 C40 family peptidase compare
HGI48_RS10790 +0.4 2.4 SDR family oxidoreductase compare
HGI48_RS11525 +0.4 1.1 NUDIX hydrolase compare
HGI48_RS00540 +0.4 1.1 YicC family protein compare
HGI48_RS05275 +0.4 1.0 transposase compare
HGI48_RS01640 +0.4 1.7 ADP-ribose diphosphatase compare
HGI48_RS10805 +0.4 2.9 virulence factor compare
HGI48_RS11965 +0.4 1.7 TetR/AcrR family transcriptional regulator compare
HGI48_RS00470 +0.4 1.6 acyl-CoA dehydrogenase compare
HGI48_RS00945 +0.4 1.2 NAD(P)H-flavin reductase compare
HGI48_RS00650 +0.4 1.7 ABC transporter ATP-binding protein compare
HGI48_RS10555 +0.4 1.2 electron transport complex subunit RsxG compare
HGI48_RS14800 +0.4 2.4 aminotransferase compare
HGI48_RS14930 +0.4 1.4 hypothetical protein compare
HGI48_RS18825 +0.4 1.2 S8 family serine peptidase compare
HGI48_RS10365 +0.4 2.2 thymidine kinase compare
HGI48_RS03190 +0.4 1.1 ribosome assembly RNA-binding protein YhbY compare
HGI48_RS15360 +0.4 1.5 two-component system sensor histidine kinase BaeS compare
HGI48_RS07865 +0.4 2.4 LysR family transcriptional regulator compare
HGI48_RS01930 +0.4 1.0 GNAT family N-acetyltransferase compare
HGI48_RS11725 +0.4 2.4 type III secretion system export apparatus subunit SctV compare
HGI48_RS05710 +0.4 1.1 helix-hairpin-helix domain-containing protein compare
HGI48_RS13540 +0.4 1.6 flagellar export chaperone FlgN compare
HGI48_RS11170 +0.4 1.9 type I toxin-antitoxin system SymE family toxin compare
HGI48_RS15790 +0.4 2.6 cyclic-guanylate-specific phosphodiesterase compare
HGI48_RS05755 +0.4 2.1 YbaY family lipoprotein compare
HGI48_RS07525 +0.4 1.5 diaminobutyrate--2-oxoglutarate transaminase compare
HGI48_RS20190 +0.4 0.9 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
HGI48_RS14890 +0.4 1.8 sulfatase-like hydrolase/transferase compare
HGI48_RS07890 +0.4 2.2 iron-containing alcohol dehydrogenase compare
HGI48_RS06890 +0.4 2.4 LuxR family transcriptional regulator compare
HGI48_RS11840 +0.4 1.2 ABC transporter permease compare
HGI48_RS15435 +0.4 1.7 ABC transporter permease subunit compare
HGI48_RS13045 +0.4 1.2 NAD-dependent protein deacylase compare
HGI48_RS16300 +0.4 1.5 S-ribosylhomocysteine lyase compare
HGI48_RS04925 +0.4 1.3 DUF2884 family protein compare
HGI48_RS17020 +0.4 1.8 MFS transporter compare
HGI48_RS09420 +0.4 2.0 methionine ABC transporter ATP-binding protein compare
HGI48_RS04755 +0.4 1.3 phosphotransferase compare
HGI48_RS10920 +0.4 2.1 DUF1471 domain-containing protein compare
HGI48_RS02065 +0.4 1.2 DUF1778 domain-containing protein compare
HGI48_RS15730 +0.4 1.9 nitrogen regulatory protein P-II compare
HGI48_RS05350 +0.4 1.8 DUF692 family protein compare
HGI48_RS18090 +0.4 0.7 glucose uptake inhibitor SgrT compare
HGI48_RS02455 +0.4 1.2 iron ABC transporter permease compare
HGI48_RS11585 +0.4 0.8 hypothetical protein compare
HGI48_RS08905 +0.4 1.3 MarR family transcriptional regulator compare
HGI48_RS00230 +0.4 1.9 urea carboxylase-associated family protein compare
HGI48_RS12335 +0.4 1.6 serine protease compare
HGI48_RS09045 +0.4 1.4 hypothetical protein compare
HGI48_RS09145 +0.4 1.8 tyrosine-type recombinase/integrase compare
HGI48_RS21345 +0.4 1.9 response regulator compare
HGI48_RS12210 +0.4 1.4 phage tail assembly protein compare
HGI48_RS12575 +0.4 1.3 stress response translation initiation inhibitor YciH compare
HGI48_RS02185 +0.3 1.8 ABC transporter permease subunit compare
HGI48_RS18765 +0.3 1.9 LysR family transcriptional regulator compare
HGI48_RS16190 +0.3 2.2 endonuclease/exonuclease/phosphatase family protein compare
HGI48_RS05420 +0.3 1.4 N-acetyltransferase compare
HGI48_RS15250 +0.3 1.3 isochorismatase family protein compare
HGI48_RS08350 +0.3 1.4 class I SAM-dependent methyltransferase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in plant experiments

For plant cv.Upstate across organisms