Experiment setATCH230 for Dickeya dianthicola 67-19

Compare to:

Norland

200 most important genes:

  gene name fitness t score description  
HGI48_RS10170 -3.0 -6.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS10140 -2.6 -4.5 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS14035 -2.5 -3.3 LD-carboxypeptidase compare
HGI48_RS13280 -2.5 -13.5 glucan biosynthesis protein G compare
HGI48_RS00680 -2.5 -3.4 orotate phosphoribosyltransferase compare
HGI48_RS03440 -2.4 -1.5 site-specific tyrosine recombinase XerD compare
HGI48_RS20045 -2.4 -4.3 tyrosine recombinase XerC compare
HGI48_RS18520 -2.3 -2.8 adenylosuccinate synthase compare
HGI48_RS15535 -2.2 -9.4 IMP dehydrogenase compare
HGI48_RS06070 -2.1 -7.4 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS19090 -2.1 -4.7 EF-P beta-lysylation protein EpmB compare
HGI48_RS01210 -2.1 -10.3 phosphoribosylamine--glycine ligase compare
HGI48_RS13235 -2.0 -10.1 dihydroorotase compare
HGI48_RS18400 -2.0 -7.0 phosphoglycerate dehydrogenase compare
HGI48_RS13275 -2.0 -11.7 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS15190 -1.9 -5.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS02290 -1.9 -3.1 hypothetical protein compare
HGI48_RS10335 -1.8 -7.6 formyltetrahydrofolate deformylase compare
HGI48_RS03265 -1.8 -4.4 lipoprotein NlpI compare
HGI48_RS16050 -1.8 -2.0 RNA polymerase-binding protein DksA compare
HGI48_RS11310 -1.8 -11.2 TerC family protein compare
HGI48_RS12925 -1.8 -7.0 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS06120 -1.8 -3.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS10430 -1.8 -3.4 TonB system transport protein TonB compare
HGI48_RS06475 -1.7 -1.8 citrate synthase compare
HGI48_RS18245 -1.7 -5.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS17775 -1.7 -4.7 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS04435 -1.7 -1.6 PTS glucose transporter subunit IIA compare
HGI48_RS14260 -1.7 -2.6 NADH-quinone oxidoreductase subunit L compare
HGI48_RS19055 -1.7 -2.4 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS16355 -1.6 -3.0 recombinase RecA compare
HGI48_RS12580 -1.6 -7.0 orotidine-5'-phosphate decarboxylase compare
HGI48_RS01215 -1.6 -6.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS15185 -1.6 -2.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS01900 -1.6 -7.4 aspartate carbamoyltransferase compare
HGI48_RS01635 -1.5 -4.2 outer membrane channel protein TolC compare
HGI48_RS01050 -1.5 -2.2 tRNA-Thr compare
HGI48_RS14270 -1.5 -1.6 NADH-quinone oxidoreductase subunit J compare
HGI48_RS18240 -1.5 -7.9 carbamoyl-phosphate synthase large subunit compare
HGI48_RS15750 -1.5 -10.2 phosphoribosylformylglycinamidine synthase compare
HGI48_RS00620 -1.5 -3.0 isoaspartyl peptidase/L-asparaginase compare
HGI48_RS18070 -1.4 -3.8 3-isopropylmalate dehydratase small subunit compare
HGI48_RS02385 -1.4 -5.5 phosphoserine phosphatase compare
HGI48_RS14405 -1.4 -8.9 amidophosphoribosyltransferase compare
HGI48_RS10975 -1.4 -4.7 redox-regulated ATPase YchF compare
HGI48_RS14305 -1.4 -2.2 NADH-quinone oxidoreductase subunit B compare
HGI48_RS04970 -1.3 -2.8 thymidylate synthase compare
HGI48_RS21720 -1.3 -2.5 membrane protein insertion efficiency factor YidD compare
HGI48_RS17565 -1.3 -4.6 alanine racemase compare
HGI48_RS15175 -1.3 -2.1 peptidylprolyl isomerase B compare
HGI48_RS04305 -1.3 -2.3 type II toxin-antitoxin system RatA family toxin compare
HGI48_RS10090 -1.3 -3.1 dihydroneopterin triphosphate diphosphatase compare
HGI48_RS11530 -1.2 -2.2 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS05660 -1.2 -2.9 cytochrome o ubiquinol oxidase subunit II compare
HGI48_RS10480 -1.2 -3.6 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS19720 -1.2 -1.6 intracellular growth attenuator family protein compare
HGI48_RS20230 -1.2 -4.6 exopolyphosphatase compare
HGI48_RS19435 -1.2 -1.2 sulfurtransferase complex subunit TusD compare
HGI48_RS12055 -1.2 -3.2 carboxy terminal-processing peptidase compare
HGI48_RS20600 -1.1 -3.2 envelope stress sensor histidine kinase CpxA compare
HGI48_RS11375 -1.1 -2.9 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS18020 -1.1 -1.9 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS08365 -1.1 -3.3 DNA sulfur modification protein DndE compare
HGI48_RS20560 -1.1 -3.4 methyltransferase domain-containing protein compare
HGI48_RS21220 -1.1 -3.6 ribosome-dependent GTPase TypA compare
HGI48_RS04315 -1.1 -4.3 outer membrane protein assembly factor BamE compare
HGI48_RS06455 -1.1 -1.6 type 2 GTP cyclohydrolase I compare
HGI48_RS20035 -1.1 -2.8 DNA helicase II compare
HGI48_RS06340 -1.1 -6.0 asparagine synthase B compare
HGI48_RS09600 -1.0 -4.3 thioredoxin-disulfide reductase compare
HGI48_RS00740 -1.0 -4.4 glycosyltransferase family 9 protein compare
HGI48_RS14350 -1.0 -4.3 acetate kinase compare
HGI48_RS21020 -1.0 -5.2 inorganic phosphate transporter PitA compare
HGI48_RS18110 -1.0 -1.4 thiamine ABC transporter ATP-binding protein ThiQ compare
HGI48_RS10500 -1.0 -4.2 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS08300 -1.0 -3.3 CcdB family protein compare
HGI48_RS00155 -1.0 -1.6 ABC transporter permease compare
HGI48_RS06480 -1.0 -2.9 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS17005 -1.0 -2.5 phosphoadenylyl-sulfate reductase compare
HGI48_RS12060 -1.0 -1.0 RNA chaperone ProQ compare
HGI48_RS11020 -1.0 -1.9 hypothetical protein compare
HGI48_RS21235 -1.0 -5.2 nitrogen regulation protein NR(I) compare
HGI48_RS18835 -1.0 -0.9 nitrogen fixation protein NifM compare
HGI48_RS20015 -1.0 -3.0 thioesterase family protein compare
HGI48_RS15865 -1.0 -7.1 ATP-dependent RNA helicase SrmB compare
HGI48_RS05640 -0.9 -3.1 protoheme IX farnesyltransferase compare
HGI48_RS07115 -0.9 -2.0 EexN family lipoprotein compare
HGI48_RS07925 -0.9 -2.7 TetR/AcrR family transcriptional regulator compare
HGI48_RS10465 -0.9 -6.2 tryptophan synthase subunit beta compare
HGI48_RS10075 -0.9 -4.6 MAPEG family protein compare
HGI48_RS19940 -0.9 -6.7 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HGI48_RS21390 -0.9 -3.7 F0F1 ATP synthase subunit I compare
HGI48_RS10990 -0.9 -2.6 AAA family ATPase compare
HGI48_RS08000 -0.9 -1.9 type VI secretion system-associated protein TagO compare
HGI48_RS15325 -0.9 -1.8 hypothetical protein compare
HGI48_RS14300 -0.9 -1.7 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS13620 -0.9 -2.3 protein DsrB compare
HGI48_RS13200 -0.9 -3.2 phosphate acyltransferase PlsX compare
HGI48_RS10900 -0.9 -3.9 fumarate/nitrate reduction transcriptional regulator Fnr compare
HGI48_RS13975 -0.9 -3.7 DNA cytosine methyltransferase compare
HGI48_RS17355 -0.9 -2.0 YggT family protein compare
HGI48_RS18065 -0.9 -4.6 3-isopropylmalate dehydratase large subunit compare
HGI48_RS01715 -0.9 -4.2 tol-pal system-associated acyl-CoA thioesterase compare
HGI48_RS08295 -0.9 -1.5 IS481 family transposase compare
HGI48_RS12355 -0.9 -2.9 LUD domain-containing protein compare
HGI48_RS15010 -0.9 -5.9 beta-galactosidase compare
HGI48_RS06280 -0.9 -1.7 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS15560 -0.9 -2.0 outer membrane protein assembly factor BamB compare
HGI48_RS12960 -0.9 -2.5 nicotinate phosphoribosyltransferase compare
HGI48_RS04440 -0.8 -3.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HGI48_RS12660 -0.8 -2.5 lactoylglutathione lyase compare
HGI48_RS20595 -0.8 -2.8 envelope stress response regulator transcription factor CpxR compare
HGI48_RS10460 -0.8 -3.8 tryptophan synthase subunit alpha compare
HGI48_RS07570 -0.8 -2.4 iron ABC transporter permease compare
HGI48_RS05560 -0.8 -1.8 transcriptional regulator NrdR compare
HGI48_RS06510 -0.8 -1.6 ADP-forming succinate--CoA ligase subunit beta compare
HGI48_RS02370 -0.8 -1.9 5-formyltetrahydrofolate cyclo-ligase compare
HGI48_RS16750 -0.8 -1.7 oxalurate catabolism protein HpxX compare
HGI48_RS03520 -0.8 -3.7 sugar transferase compare
HGI48_RS21475 -0.8 -2.1 acyl carrier protein compare
HGI48_RS19750 -0.8 -2.0 two-component system response regulator OmpR compare
HGI48_RS15615 -0.8 -2.0 Fe-S cluster assembly protein IscX compare
HGI48_RS05325 -0.8 -2.8 GNAT family N-acetyltransferase compare
HGI48_RS12865 -0.8 -2.7 AI-2E family transporter YdiK compare
HGI48_RS06635 -0.8 -4.5 UDP-glucose 4-epimerase GalE compare
HGI48_RS18060 -0.8 -4.4 3-isopropylmalate dehydrogenase compare
HGI48_RS05880 -0.8 -1.8 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
HGI48_RS21265 -0.8 -3.4 thiol:disulfide interchange protein DsbA compare
HGI48_RS13040 -0.8 -2.3 hypothetical protein compare
HGI48_RS13560 -0.8 -2.6 protein phosphatase CheZ compare
HGI48_RS07875 -0.8 -3.3 metal ABC transporter permease compare
HGI48_RS05790 -0.8 -5.5 multidrug efflux RND transporter permease subunit compare
HGI48_RS14180 -0.7 -2.9 hydrogenase expression/formation protein HypE compare
HGI48_RS10540 -0.7 -4.4 HTH-type transcriptional regulator CysB compare
HGI48_RS04870 -0.7 -2.4 hypothetical protein compare
HGI48_RS00800 -0.7 -0.9 serine O-acetyltransferase compare
HGI48_RS08685 -0.7 -1.8 malonyl-ACP O-methyltransferase BioC compare
HGI48_RS05795 -0.7 -3.2 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS18510 -0.7 -5.4 class 1 fructose-bisphosphatase compare
HGI48_RS19070 -0.7 -2.7 fumarate reductase subunit FrdC compare
HGI48_RS18030 -0.7 -4.4 catabolite repressor/activator compare
HGI48_RS06735 -0.7 -1.5 protein-tyrosine-phosphatase compare
HGI48_RS07580 -0.7 -3.2 ABC transporter ATP-binding protein compare
HGI48_RS02410 -0.7 -1.8 stress-response protein compare
HGI48_RS01410 -0.7 -1.1 ribosome-associated protein compare
HGI48_RS20545 -0.7 -1.6 NUDIX domain-containing protein compare
HGI48_RS20225 -0.7 -4.1 ATP-dependent RNA helicase RhlB compare
HGI48_RS14970 -0.7 -1.8 hypothetical protein compare
HGI48_RS05650 -0.7 -1.7 cytochrome o ubiquinol oxidase subunit III compare
HGI48_RS05535 -0.7 -0.7 preprotein translocase subunit YajC compare
HGI48_RS14445 -0.7 -1.6 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS09240 -0.7 -3.0 GTP-binding protein compare
HGI48_RS12630 -0.7 -0.9 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS14575 -0.7 -3.5 phospholipid-binding lipoprotein MlaA compare
HGI48_RS06065 -0.7 -2.9 phosphoribosylglycinamide formyltransferase compare
HGI48_RS15830 -0.7 -3.0 elongation factor 4 compare
HGI48_RS16170 -0.7 -2.0 ribonuclease HI compare
HGI48_RS10135 -0.7 -0.7 murein DD-endopeptidase MepM compare
HGI48_RS13390 -0.7 -3.6 flagellar filament capping protein FliD compare
HGI48_RS03450 -0.6 -2.4 single-stranded-DNA-specific exonuclease RecJ compare
HGI48_RS07710 -0.6 -1.6 LysR family transcriptional regulator compare
HGI48_RS10885 -0.6 -2.3 superoxide dismutase family protein compare
HGI48_RS05655 -0.6 -2.6 cytochrome o ubiquinol oxidase subunit I compare
HGI48_RS18210 -0.6 -1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HGI48_RS17620 -0.6 -1.3 hypothetical protein compare
HGI48_RS15810 -0.6 -2.8 DNA repair protein RecO compare
HGI48_RS00830 -0.6 -2.0 uridine phosphorylase compare
HGI48_RS04245 -0.6 -1.6 DUF4755 domain-containing protein compare
HGI48_RS05605 -0.6 -2.6 tRNA 4-thiouridine(8) synthase ThiI compare
HGI48_RS17235 -0.6 -1.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HGI48_RS00095 -0.6 -0.7 PAS domain-containing protein compare
HGI48_RS05470 -0.6 -2.0 fructokinase compare
HGI48_RS09730 -0.6 -2.6 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS01290 -0.6 -1.0 DNA-binding transcriptional regulator Fis compare
HGI48_RS01720 -0.6 -1.5 TonB system transport protein ExbD compare
HGI48_RS01640 -0.6 -2.1 ADP-ribose diphosphatase compare
HGI48_RS18205 -0.6 -3.6 Co2+/Mg2+ efflux protein ApaG compare
HGI48_RS10470 -0.6 -3.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS10485 -0.6 -3.1 anthranilate synthase component 1 compare
HGI48_RS03900 -0.6 -1.1 hypothetical protein compare
HGI48_RS11595 -0.6 -1.0 damage-inducible protein J compare
HGI48_RS00795 -0.6 -0.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
HGI48_RS20220 -0.6 -1.3 thioredoxin TrxA compare
HGI48_RS00735 -0.6 -1.0 glycosyltransferase family 4 protein compare
HGI48_RS18055 -0.6 -4.4 2-isopropylmalate synthase compare
HGI48_RS07430 -0.6 -1.9 DUF3916 domain-containing protein compare
HGI48_RS20890 -0.6 -1.7 hypothetical protein compare
HGI48_RS02125 -0.6 -1.2 D-threitol dehydrogenase compare
HGI48_RS04720 -0.6 -1.8 hypothetical protein compare
HGI48_RS10245 -0.6 -1.5 GlsB/YeaQ/YmgE family stress response membrane protein compare
HGI48_RS08380 -0.6 -4.0 DNA sulfur modification protein DndB compare
HGI48_RS14355 -0.6 -2.0 phosphate acetyltransferase compare
HGI48_RS13845 -0.6 -2.1 hypothetical protein compare
HGI48_RS06785 -0.6 -1.5 glycosyl transferase compare
HGI48_RS16060 -0.6 -2.8 polynucleotide adenylyltransferase PcnB compare
HGI48_RS18530 -0.6 -3.2 protease modulator HflC compare
HGI48_RS02940 -0.6 -2.0 phosphoadenosine phosphosulfate reductase family protein compare
HGI48_RS01150 -0.6 -1.7 thiazole synthase compare
HGI48_RS03740 -0.6 -2.0 inositol 2-dehydrogenase compare
HGI48_RS08450 -0.6 -1.7 conjugal transfer protein TrbF compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in plant experiments

For plant cv.Norland across organisms