Experiment setATCH225 for Dickeya dianthicola 67-19

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
HGI48_RS10480 -3.1 -6.7 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS18520 -2.7 -2.5 adenylosuccinate synthase compare
HGI48_RS19090 -2.6 -5.0 EF-P beta-lysylation protein EpmB compare
HGI48_RS02290 -2.5 -4.9 hypothetical protein compare
HGI48_RS10170 -2.4 -5.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS03440 -2.3 -2.8 site-specific tyrosine recombinase XerD compare
HGI48_RS20045 -2.1 -4.4 tyrosine recombinase XerC compare
HGI48_RS10485 -2.1 -9.0 anthranilate synthase component 1 compare
HGI48_RS13275 -2.1 -12.6 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS16050 -1.9 -1.8 RNA polymerase-binding protein DksA compare
HGI48_RS15175 -1.8 -2.4 peptidylprolyl isomerase B compare
HGI48_RS04970 -1.8 -4.0 thymidylate synthase compare
HGI48_RS10140 -1.8 -2.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS02385 -1.8 -6.0 phosphoserine phosphatase compare
HGI48_RS13280 -1.8 -10.3 glucan biosynthesis protein G compare
HGI48_RS10460 -1.8 -6.2 tryptophan synthase subunit alpha compare
HGI48_RS18400 -1.8 -6.8 phosphoglycerate dehydrogenase compare
HGI48_RS10430 -1.8 -2.9 TonB system transport protein TonB compare
HGI48_RS06280 -1.8 -2.6 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS18065 -1.7 -7.8 3-isopropylmalate dehydratase large subunit compare
HGI48_RS06085 -1.7 -2.9 DnaA inactivator Hda compare
HGI48_RS03900 -1.7 -3.4 hypothetical protein compare
HGI48_RS14350 -1.7 -4.2 acetate kinase compare
HGI48_RS15535 -1.7 -8.3 IMP dehydrogenase compare
HGI48_RS12630 -1.7 -1.6 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS17565 -1.7 -5.1 alanine racemase compare
HGI48_RS06120 -1.6 -2.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS18070 -1.6 -4.7 3-isopropylmalate dehydratase small subunit compare
HGI48_RS15190 -1.6 -4.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS21220 -1.6 -5.9 ribosome-dependent GTPase TypA compare
HGI48_RS01210 -1.6 -8.8 phosphoribosylamine--glycine ligase compare
HGI48_RS01410 -1.6 -1.5 ribosome-associated protein compare
HGI48_RS17775 -1.5 -4.2 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS05700 -1.5 -2.0 DNA-binding protein HU-beta compare
HGI48_RS20560 -1.5 -4.9 methyltransferase domain-containing protein compare
HGI48_RS14490 -1.5 -3.1 glutathione S-transferase compare
HGI48_RS20230 -1.5 -6.7 exopolyphosphatase compare
HGI48_RS17770 -1.5 -1.9 DeoR/GlpR transcriptional regulator compare
HGI48_RS00680 -1.5 -3.2 orotate phosphoribosyltransferase compare
HGI48_RS15185 -1.5 -1.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS13235 -1.5 -6.3 dihydroorotase compare
HGI48_RS15010 -1.4 -8.8 beta-galactosidase compare
HGI48_RS11375 -1.4 -3.4 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS01290 -1.4 -2.0 DNA-binding transcriptional regulator Fis compare
HGI48_RS17530 -1.4 -2.0 RES family NAD+ phosphorylase compare
HGI48_RS18535 -1.3 -6.4 FtsH protease activity modulator HflK compare
HGI48_RS15750 -1.3 -10.3 phosphoribosylformylglycinamidine synthase compare
HGI48_RS06635 -1.3 -7.7 UDP-glucose 4-epimerase GalE compare
HGI48_RS08295 -1.3 -2.2 IS481 family transposase compare
HGI48_RS18055 -1.3 -8.3 2-isopropylmalate synthase compare
HGI48_RS02790 -1.3 -3.7 transcriptional regulator ExuR compare
HGI48_RS10465 -1.3 -4.8 tryptophan synthase subunit beta compare
HGI48_RS03265 -1.3 -3.9 lipoprotein NlpI compare
HGI48_RS00360 -1.2 -2.3 MarR family transcriptional regulator compare
HGI48_RS14405 -1.2 -8.5 amidophosphoribosyltransferase compare
HGI48_RS19070 -1.2 -2.9 fumarate reductase subunit FrdC compare
HGI48_RS10075 -1.2 -6.4 MAPEG family protein compare
HGI48_RS12580 -1.2 -5.6 orotidine-5'-phosphate decarboxylase compare
HGI48_RS10900 -1.2 -4.4 fumarate/nitrate reduction transcriptional regulator Fnr compare
HGI48_RS01215 -1.2 -4.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS19785 -1.2 -2.1 Fe-S biogenesis protein NfuA compare
HGI48_RS18030 -1.2 -7.6 catabolite repressor/activator compare
HGI48_RS20620 -1.2 -3.2 DUF2756 domain-containing protein compare
HGI48_RS06455 -1.2 -1.5 type 2 GTP cyclohydrolase I compare
HGI48_RS15615 -1.1 -2.4 Fe-S cluster assembly protein IscX compare
HGI48_RS12925 -1.1 -4.7 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS01900 -1.1 -6.3 aspartate carbamoyltransferase compare
HGI48_RS03520 -1.1 -3.9 sugar transferase compare
HGI48_RS17005 -1.1 -2.9 phosphoadenylyl-sulfate reductase compare
HGI48_RS20070 -1.1 -2.6 class I adenylate cyclase compare
HGI48_RS17355 -1.1 -2.8 YggT family protein compare
HGI48_RS20015 -1.1 -3.2 thioesterase family protein compare
HGI48_RS08365 -1.1 -3.5 DNA sulfur modification protein DndE compare
HGI48_RS05640 -1.1 -3.1 protoheme IX farnesyltransferase compare
HGI48_RS20465 -1.1 -6.5 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
HGI48_RS17805 -1.1 -1.5 YhcH/YjgK/YiaL family protein compare
HGI48_RS10975 -1.1 -3.8 redox-regulated ATPase YchF compare
HGI48_RS10470 -1.1 -3.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS11530 -1.0 -2.2 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS00755 -1.0 -2.9 putative lipopolysaccharide heptosyltransferase III compare
HGI48_RS06480 -1.0 -2.8 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS21235 -1.0 -6.1 nitrogen regulation protein NR(I) compare
HGI48_RS20035 -1.0 -3.6 DNA helicase II compare
HGI48_RS14260 -1.0 -2.7 NADH-quinone oxidoreductase subunit L compare
HGI48_RS21205 -1.0 -2.6 fatty acid biosynthesis protein FabY compare
HGI48_RS10335 -1.0 -3.9 formyltetrahydrofolate deformylase compare
HGI48_RS09155 -1.0 -5.6 DUF3413 domain-containing protein compare
HGI48_RS20600 -1.0 -3.2 envelope stress sensor histidine kinase CpxA compare
HGI48_RS10475 -1.0 -2.9 anthranilate phosphoribosyltransferase compare
HGI48_RS11645 -1.0 -2.5 CesT family type III secretion system chaperone compare
HGI48_RS15580 -1.0 -2.7 cytoskeleton protein RodZ compare
HGI48_RS00040 -1.0 -2.5 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
HGI48_RS15560 -1.0 -2.2 outer membrane protein assembly factor BamB compare
HGI48_RS04870 -1.0 -2.7 hypothetical protein compare
HGI48_RS09600 -0.9 -3.7 thioredoxin-disulfide reductase compare
HGI48_RS01405 -0.9 -3.2 DUF1543 domain-containing protein compare
HGI48_RS18335 -0.9 -2.6 threonine synthase compare
HGI48_RS07115 -0.9 -2.0 EexN family lipoprotein compare
HGI48_RS16355 -0.9 -1.6 recombinase RecA compare
HGI48_RS21390 -0.9 -3.4 F0F1 ATP synthase subunit I compare
HGI48_RS11310 -0.9 -5.9 TerC family protein compare
HGI48_RS18340 -0.9 -2.6 homoserine kinase compare
HGI48_RS05655 -0.9 -3.6 cytochrome o ubiquinol oxidase subunit I compare
HGI48_RS14750 -0.9 -3.6 GspS family T2SS pilot lipoprotein variant OutS compare
HGI48_RS02700 -0.9 -2.6 FxsA family protein compare
HGI48_RS13175 -0.9 -3.5 beta-ketoacyl-ACP synthase II compare
HGI48_RS20225 -0.9 -4.6 ATP-dependent RNA helicase RhlB compare
HGI48_RS05680 -0.9 -3.5 trigger factor compare
HGI48_RS18180 -0.9 -2.9 co-chaperone DjlA compare
HGI48_RS05790 -0.9 -6.1 multidrug efflux RND transporter permease subunit compare
HGI48_RS07925 -0.9 -2.5 TetR/AcrR family transcriptional regulator compare
HGI48_RS06070 -0.8 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS01715 -0.8 -4.7 tol-pal system-associated acyl-CoA thioesterase compare
HGI48_RS00785 -0.8 -1.4 rhodanese-like domain-containing protein compare
HGI48_RS13975 -0.8 -2.5 DNA cytosine methyltransferase compare
HGI48_RS19735 -0.8 -3.8 Hsp33 family molecular chaperone HslO compare
HGI48_RS11315 -0.8 -2.4 PTS mannose transporter subunit IIAB compare
HGI48_RS05795 -0.8 -3.9 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS06340 -0.8 -3.7 asparagine synthase B compare
HGI48_RS21020 -0.8 -3.8 inorganic phosphate transporter PitA compare
HGI48_RS07180 -0.8 -1.8 helix-turn-helix domain-containing protein compare
HGI48_RS08965 -0.8 -1.4 hypothetical protein compare
HGI48_RS00740 -0.8 -3.7 glycosyltransferase family 9 protein compare
HGI48_RS17620 -0.8 -2.2 hypothetical protein compare
HGI48_RS20395 -0.8 -4.5 HTH-type transcriptional repressor FabR compare
HGI48_RS04435 -0.8 -1.3 PTS glucose transporter subunit IIA compare
HGI48_RS18530 -0.8 -3.1 protease modulator HflC compare
HGI48_RS09740 -0.8 -2.1 histidinol-phosphate transaminase compare
HGI48_RS15865 -0.8 -5.8 ATP-dependent RNA helicase SrmB compare
HGI48_RS18075 -0.8 -1.6 siderophore-interacting protein compare
HGI48_RS18060 -0.8 -3.5 3-isopropylmalate dehydrogenase compare
HGI48_RS13210 -0.8 -2.6 23S rRNA accumulation protein YceD compare
HGI48_RS13045 -0.8 -2.0 NAD-dependent protein deacylase compare
HGI48_RS04450 -0.8 -4.2 cysteine synthase A compare
HGI48_RS19075 -0.8 -2.1 fumarate reductase subunit FrdD compare
HGI48_RS04315 -0.8 -2.7 outer membrane protein assembly factor BamE compare
HGI48_RS01300 -0.8 -2.0 50S ribosomal protein L11 methyltransferase compare
HGI48_RS19720 -0.8 -1.1 intracellular growth attenuator family protein compare
HGI48_RS12805 -0.8 -2.5 pyruvate kinase PykF compare
HGI48_RS14435 -0.8 -1.3 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS18130 -0.8 -2.8 DedA family protein compare
HGI48_RS12670 -0.8 -3.7 Grx4 family monothiol glutaredoxin compare
HGI48_RS01495 -0.8 -4.0 phospholipid-binding protein MlaC compare
HGI48_RS02765 -0.8 -1.5 YqjK-like family protein compare
HGI48_RS10245 -0.8 -1.8 GlsB/YeaQ/YmgE family stress response membrane protein compare
HGI48_RS06755 -0.8 -4.2 dTDP-glucose 4,6-dehydratase compare
HGI48_RS20810 -0.8 -5.0 2-dehydro-3-deoxygluconokinase compare
HGI48_RS21710 -0.8 -3.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HGI48_RS17035 -0.8 -2.3 7-carboxy-7-deazaguanine synthase QueE compare
HGI48_RS06785 -0.8 -1.6 glycosyl transferase compare
HGI48_RS03100 -0.8 -2.9 hypothetical protein compare
HGI48_RS01465 -0.7 -4.8 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
HGI48_RS19750 -0.7 -1.7 two-component system response regulator OmpR compare
HGI48_RS00915 -0.7 -1.3 Sec-independent protein translocase subunit TatB compare
HGI48_RS21650 -0.7 -1.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
HGI48_RS17485 -0.7 -3.5 diaminopimelate decarboxylase compare
HGI48_RS21430 -0.7 -1.5 F0F1 ATP synthase subunit epsilon compare
HGI48_RS18240 -0.7 -3.6 carbamoyl-phosphate synthase large subunit compare
HGI48_RS19425 -0.7 -1.6 sulfurtransferase complex subunit TusB compare
HGI48_RS12475 -0.7 -2.5 TIGR01620 family protein compare
HGI48_RS01635 -0.7 -1.9 outer membrane channel protein TolC compare
HGI48_RS13560 -0.7 -3.0 protein phosphatase CheZ compare
HGI48_RS08580 -0.7 -2.2 type VI secretion system tip protein VgrG compare
HGI48_RS05860 -0.7 -3.0 Kef family K(+) transporter compare
HGI48_RS18205 -0.7 -4.3 Co2+/Mg2+ efflux protein ApaG compare
HGI48_RS02125 -0.7 -1.1 D-threitol dehydrogenase compare
HGI48_RS14630 -0.7 -2.3 MbtH family NRPS accessory protein compare
HGI48_RS18510 -0.7 -4.9 class 1 fructose-bisphosphatase compare
HGI48_RS05775 -0.7 -1.9 Hha toxicity modulator TomB compare
HGI48_RS12865 -0.7 -2.3 AI-2E family transporter YdiK compare
HGI48_RS05530 -0.7 -2.1 tRNA guanosine(34) transglycosylase Tgt compare
HGI48_RS17750 -0.7 -2.2 ABC transporter ATP-binding protein compare
HGI48_RS12055 -0.7 -2.1 carboxy terminal-processing peptidase compare
HGI48_RS14610 -0.7 -1.9 Fe(3+)-siderophore ABC transporter permease compare
HGI48_RS14035 -0.7 -1.3 LD-carboxypeptidase compare
HGI48_RS15810 -0.7 -2.8 DNA repair protein RecO compare
HGI48_RS18135 -0.7 -3.6 N-acetylmuramidase family protein compare
HGI48_RS02330 -0.7 -2.2 hypothetical protein compare
HGI48_RS13115 -0.7 -1.8 beta-N-acetylhexosaminidase compare
HGI48_RS14280 -0.7 -1.3 NADH-quinone oxidoreductase subunit NuoH compare
HGI48_RS17345 -0.7 -1.9 YggS family pyridoxal phosphate-dependent enzyme compare
HGI48_RS08595 -0.7 -2.9 DgsA anti-repressor MtfA compare
HGI48_RS05325 -0.7 -3.0 GNAT family N-acetyltransferase compare
HGI48_RS07085 -0.7 -2.2 conjugal transfer protein compare
HGI48_RS06625 -0.7 -3.8 galactokinase compare
HGI48_RS13390 -0.7 -3.0 flagellar filament capping protein FliD compare
HGI48_RS10500 -0.7 -3.1 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS08780 -0.7 -2.3 secretion protein HlyD compare
HGI48_RS14600 -0.6 -3.6 Fe2+-enterobactin ABC transporter substrate-binding protein compare
HGI48_RS12545 -0.6 -3.1 exoribonuclease II compare
HGI48_RS16925 -0.6 -2.5 MetQ/NlpA family lipoprotein compare
HGI48_RS12660 -0.6 -2.0 lactoylglutathione lyase compare
HGI48_RS14300 -0.6 -1.1 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS00990 -0.6 -3.3 Trk system potassium transporter TrkH compare
HGI48_RS15830 -0.6 -3.4 elongation factor 4 compare
HGI48_RS00685 -0.6 -1.7 nucleoid occlusion factor SlmA compare
HGI48_RS15020 -0.6 -3.5 ABC transporter permease subunit compare
HGI48_RS01050 -0.6 -1.0 tRNA-Thr compare
HGI48_RS11595 -0.6 -1.6 damage-inducible protein J compare
HGI48_RS09665 -0.6 -5.2 formate C-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in plant experiments

For plant cv.Atlantic across organisms