Experiment setATCH223 for Dickeya dianthicola 67-19

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
HGI48_RS03215 -4.6 -0.9 preprotein translocase subunit SecG compare
HGI48_RS19435 -4.4 -1.5 sulfurtransferase complex subunit TusD compare
HGI48_RS05700 -4.3 -1.7 DNA-binding protein HU-beta compare
HGI48_RS14280 -3.8 -1.8 NADH-quinone oxidoreductase subunit NuoH compare
HGI48_RS16355 -3.8 -2.1 recombinase RecA compare
HGI48_RS16050 -3.5 -1.0 RNA polymerase-binding protein DksA compare
HGI48_RS00735 -3.5 -1.4 glycosyltransferase family 4 protein compare
HGI48_RS04385 -3.2 -2.8 LuxR family transcriptional regulator compare
HGI48_RS17770 -3.0 -1.7 DeoR/GlpR transcriptional regulator compare
HGI48_RS20045 -2.9 -4.4 tyrosine recombinase XerC compare
HGI48_RS10470 -2.7 -8.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS19720 -2.7 -2.4 intracellular growth attenuator family protein compare
HGI48_RS10460 -2.7 -6.5 tryptophan synthase subunit alpha compare
HGI48_RS06630 -2.7 -2.5 galactose-1-phosphate uridylyltransferase compare
HGI48_RS10430 -2.6 -3.4 TonB system transport protein TonB compare
HGI48_RS09310 -2.5 -2.3 acyl carrier protein compare
HGI48_RS07650 -2.4 -1.8 hypothetical protein compare
HGI48_RS11375 -2.4 -3.4 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS10480 -2.4 -3.0 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS18400 -2.4 -6.5 phosphoglycerate dehydrogenase compare
HGI48_RS06775 -2.3 -1.9 glycosyltransferase family 2 protein compare
HGI48_RS01410 -2.3 -1.7 ribosome-associated protein compare
HGI48_RS18020 -2.3 -2.7 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS05690 -2.3 -2.8 ATP-dependent protease ATP-binding subunit ClpX compare
HGI48_RS13210 -2.2 -2.9 23S rRNA accumulation protein YceD compare
HGI48_RS07925 -2.2 -3.4 TetR/AcrR family transcriptional regulator compare
HGI48_RS08300 -2.2 -3.2 CcdB family protein compare
HGI48_RS13275 -2.2 -11.3 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS14285 -2.1 -1.7 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS18065 -2.1 -6.0 3-isopropylmalate dehydratase large subunit compare
HGI48_RS15535 -2.1 -6.7 IMP dehydrogenase compare
HGI48_RS12060 -2.1 -1.8 RNA chaperone ProQ compare
HGI48_RS15805 -2.1 -2.1 pyridoxine 5'-phosphate synthase compare
HGI48_RS17005 -2.1 -3.2 phosphoadenylyl-sulfate reductase compare
HGI48_RS10140 -2.1 -2.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS15185 -2.0 -1.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS18090 -2.0 -1.7 glucose uptake inhibitor SgrT compare
HGI48_RS10485 -2.0 -6.0 anthranilate synthase component 1 compare
HGI48_RS18340 -2.0 -2.2 homoserine kinase compare
HGI48_RS03520 -1.9 -5.4 sugar transferase compare
HGI48_RS18520 -1.9 -1.4 adenylosuccinate synthase compare
HGI48_RS13280 -1.9 -9.2 glucan biosynthesis protein G compare
HGI48_RS19940 -1.9 -9.3 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HGI48_RS05790 -1.9 -9.2 multidrug efflux RND transporter permease subunit compare
HGI48_RS20560 -1.9 -5.4 methyltransferase domain-containing protein compare
HGI48_RS10475 -1.8 -3.8 anthranilate phosphoribosyltransferase compare
HGI48_RS19930 -1.8 -3.4 CpmJ protein compare
HGI48_RS11020 -1.8 -1.8 hypothetical protein compare
HGI48_RS10335 -1.8 -5.6 formyltetrahydrofolate deformylase compare
HGI48_RS00755 -1.8 -3.2 putative lipopolysaccharide heptosyltransferase III compare
HGI48_RS18070 -1.8 -4.0 3-isopropylmalate dehydratase small subunit compare
HGI48_RS19090 -1.7 -1.9 EF-P beta-lysylation protein EpmB compare
HGI48_RS17565 -1.7 -3.9 alanine racemase compare
HGI48_RS14610 -1.7 -2.0 Fe(3+)-siderophore ABC transporter permease compare
HGI48_RS01215 -1.7 -5.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS20035 -1.6 -4.2 DNA helicase II compare
HGI48_RS14305 -1.6 -1.5 NADH-quinone oxidoreductase subunit B compare
HGI48_RS07350 -1.6 -2.5 4Fe-4S binding protein compare
HGI48_RS06635 -1.6 -6.3 UDP-glucose 4-epimerase GalE compare
HGI48_RS18600 -1.6 -4.8 ABC transporter permease compare
HGI48_RS04435 -1.6 -1.2 PTS glucose transporter subunit IIA compare
HGI48_RS14920 -1.6 -2.5 inovirus-type Gp2 protein compare
HGI48_RS09950 -1.6 -2.4 LysR family transcriptional regulator compare
HGI48_RS10245 -1.6 -2.0 GlsB/YeaQ/YmgE family stress response membrane protein compare
HGI48_RS19750 -1.6 -2.4 two-component system response regulator OmpR compare
HGI48_RS21460 -1.6 -2.6 beta-ketoacyl synthase chain length factor compare
HGI48_RS20845 -1.6 -2.2 cellulose synthase compare
HGI48_RS10075 -1.6 -6.1 MAPEG family protein compare
HGI48_RS05325 -1.6 -3.8 GNAT family N-acetyltransferase compare
HGI48_RS07570 -1.5 -2.5 iron ABC transporter permease compare
HGI48_RS19935 -1.5 -5.4 carbapenem biosynthesis protein CpmH compare
HGI48_RS04025 -1.5 -2.4 DUF2840 domain-containing protein compare
HGI48_RS06795 -1.5 -1.7 glycosyltransferase compare
HGI48_RS01485 -1.5 -3.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
HGI48_RS02385 -1.5 -4.9 phosphoserine phosphatase compare
HGI48_RS01210 -1.5 -5.0 phosphoribosylamine--glycine ligase compare
HGI48_RS08365 -1.5 -3.7 DNA sulfur modification protein DndE compare
HGI48_RS00515 -1.5 -2.7 LuxR family transcriptional regulator compare
HGI48_RS12925 -1.5 -4.0 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS03510 -1.4 -8.8 polysaccharide biosynthesis protein compare
HGI48_RS10500 -1.4 -4.1 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS17775 -1.4 -2.6 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS19070 -1.4 -2.8 fumarate reductase subunit FrdC compare
HGI48_RS11740 -1.4 -1.3 type III secretion protein compare
HGI48_RS05650 -1.4 -1.7 cytochrome o ubiquinol oxidase subunit III compare
HGI48_RS05390 -1.4 -1.0 alkylphosphonate utilization protein compare
HGI48_RS05300 -1.4 -2.1 helix-turn-helix transcriptional regulator compare
HGI48_RS17890 -1.4 -2.5 carboxylating nicotinate-nucleotide diphosphorylase compare
HGI48_RS18125 -1.4 -1.5 acetolactate synthase small subunit compare
HGI48_RS11530 -1.3 -1.3 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS18060 -1.3 -4.6 3-isopropylmalate dehydrogenase compare
HGI48_RS01150 -1.3 -2.8 thiazole synthase compare
HGI48_RS00680 -1.3 -1.4 orotate phosphoribosyltransferase compare
HGI48_RS10550 -1.3 -1.6 electron transport complex subunit E compare
HGI48_RS10170 -1.3 -1.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS14510 -1.3 -1.4 YfcL family protein compare
HGI48_RS06840 -1.3 -3.5 NADP-dependent phosphogluconate dehydrogenase compare
HGI48_RS20745 -1.3 -3.0 cell division protein FtsX compare
HGI48_RS10900 -1.3 -3.2 fumarate/nitrate reduction transcriptional regulator Fnr compare
HGI48_RS13015 -1.3 -2.3 EAL domain-containing protein compare
HGI48_RS08965 -1.3 -1.1 hypothetical protein compare
HGI48_RS10465 -1.3 -4.4 tryptophan synthase subunit beta compare
HGI48_RS09930 -1.3 -2.0 NUDIX hydrolase compare
HGI48_RS02715 -1.3 -1.1 chorismate lyase compare
HGI48_RS07775 -1.3 -2.4 LysR family transcriptional regulator compare
HGI48_RS05910 -1.3 -1.9 2Fe-2S ferredoxin-like protein compare
HGI48_RS06120 -1.3 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS01445 -1.3 -1.5 RNA polymerase factor sigma-54 compare
HGI48_RS05795 -1.3 -3.9 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS06780 -1.3 -2.2 oligosaccharide flippase family protein compare
HGI48_RS13025 -1.3 -2.8 vitamin B12 ABC transporter ATP-binding protein BtuD compare
HGI48_RS20270 -1.3 -5.4 ketol-acid reductoisomerase compare
HGI48_RS18410 -1.3 -1.4 hypothetical protein compare
HGI48_RS12900 -1.3 -4.8 membrane integrity-associated transporter subunit PqiA compare
HGI48_RS10975 -1.3 -2.9 redox-regulated ATPase YchF compare
HGI48_RS01845 -1.2 -2.0 ABC transporter permease compare
HGI48_RS21220 -1.2 -2.9 ribosome-dependent GTPase TypA compare
HGI48_RS15430 -1.2 -2.9 amino acid ABC transporter ATP-binding protein compare
HGI48_RS06250 -1.2 -2.1 zinc ribbon-containing protein compare
HGI48_RS02775 -1.2 -1.2 DUF883 domain-containing protein compare
HGI48_RS04350 -1.2 -1.2 YaiI/YqxD family protein compare
HGI48_RS13235 -1.2 -4.9 dihydroorotase compare
HGI48_RS01105 -1.2 -1.1 DUF1127 domain-containing protein compare
HGI48_RS19785 -1.2 -0.9 Fe-S biogenesis protein NfuA compare
HGI48_RS12580 -1.2 -4.1 orotidine-5'-phosphate decarboxylase compare
HGI48_RS13030 -1.2 -2.7 glutathione peroxidase compare
HGI48_RS18605 -1.2 -3.1 ABC transporter ATP-binding protein compare
HGI48_RS10425 -1.2 -1.1 YciI family protein compare
HGI48_RS08295 -1.2 -1.4 IS481 family transposase compare
HGI48_RS15010 -1.2 -5.3 beta-galactosidase compare
HGI48_RS14355 -1.2 -2.1 phosphate acetyltransferase compare
HGI48_RS01440 -1.2 -2.3 ribosome hibernation promoting factor compare
HGI48_RS14270 -1.2 -1.1 NADH-quinone oxidoreductase subunit J compare
HGI48_RS14350 -1.2 -1.9 acetate kinase compare
HGI48_RS17190 -1.2 -1.5 IS4 family transposase compare
HGI48_RS05530 -1.2 -2.5 tRNA guanosine(34) transglycosylase Tgt compare
HGI48_RS06070 -1.2 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS17645 -1.1 -2.3 phage tail protein compare
HGI48_RS12570 -1.1 -2.0 osmotically-inducible lipoprotein OsmB compare
HGI48_RS05660 -1.1 -1.7 cytochrome o ubiquinol oxidase subunit II compare
HGI48_RS14615 -1.1 -2.1 iron-enterobactin ABC transporter permease compare
HGI48_RS17485 -1.1 -4.0 diaminopimelate decarboxylase compare
HGI48_RS15750 -1.1 -6.9 phosphoribosylformylglycinamidine synthase compare
HGI48_RS20305 -1.1 -2.0 acetolactate synthase 2 small subunit compare
HGI48_RS18615 -1.1 -2.9 hypothetical protein compare
HGI48_RS06675 -1.1 -4.0 6-phosphogluconolactonase compare
HGI48_RS17185 -1.1 -3.4 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
HGI48_RS03265 -1.1 -2.2 lipoprotein NlpI compare
HGI48_RS18830 -1.1 -1.9 IS3 family transposase compare
HGI48_RS15190 -1.1 -2.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS09810 -1.1 -1.7 citrate lyase holo-[acyl-carrier protein] synthase compare
HGI48_RS14180 -1.1 -2.6 hydrogenase expression/formation protein HypE compare
HGI48_RS14190 -1.1 -1.2 hydrogenase maturation factor HybG compare
HGI48_RS18075 -1.1 -1.0 siderophore-interacting protein compare
HGI48_RS02085 -1.1 -2.6 amino acid transporter compare
HGI48_RS14405 -1.1 -5.8 amidophosphoribosyltransferase compare
HGI48_RS08605 -1.1 -2.2 DUF3168 domain-containing protein compare
HGI48_RS13975 -1.1 -3.4 DNA cytosine methyltransferase compare
HGI48_RS13200 -1.1 -1.9 phosphate acyltransferase PlsX compare
HGI48_RS04065 -1.1 -0.9 DUF736 domain-containing protein compare
HGI48_RS01290 -1.1 -1.5 DNA-binding transcriptional regulator Fis compare
HGI48_RS02860 -1.1 -1.4 ATP-independent periplasmic protein-refolding chaperone compare
HGI48_RS14580 -1.1 -1.2 tRNA-Arg compare
HGI48_RS12960 -1.1 -1.6 nicotinate phosphoribosyltransferase compare
HGI48_RS03275 -1.1 -2.2 DEAD/DEAH family ATP-dependent RNA helicase compare
HGI48_RS00620 -1.1 -1.4 isoaspartyl peptidase/L-asparaginase compare
HGI48_RS01715 -1.1 -3.6 tol-pal system-associated acyl-CoA thioesterase compare
HGI48_RS09465 -1.1 -2.0 oxygen-insensitive NADPH nitroreductase compare
HGI48_RS18240 -1.1 -5.0 carbamoyl-phosphate synthase large subunit compare
HGI48_RS02765 -1.1 -1.1 YqjK-like family protein compare
HGI48_RS15865 -1.1 -5.4 ATP-dependent RNA helicase SrmB compare
HGI48_RS02145 -1.1 -4.3 ABC transporter permease compare
HGI48_RS13175 -1.1 -3.2 beta-ketoacyl-ACP synthase II compare
HGI48_RS01430 -1.0 -3.0 RNase adapter RapZ compare
HGI48_RS18195 -1.0 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HGI48_RS08740 -1.0 -1.6 ABC transporter ATP-binding protein compare
HGI48_RS15765 -1.0 -2.6 N-acetylmuramic acid 6-phosphate etherase compare
HGI48_RS04320 -1.0 -3.3 DNA repair protein RecN compare
HGI48_RS12040 -1.0 -1.3 two-component system response regulator NarL compare
HGI48_RS15175 -1.0 -1.0 peptidylprolyl isomerase B compare
HGI48_RS13545 -1.0 -1.3 flagellar protein FlhE compare
HGI48_RS08250 -1.0 -2.7 FadR family transcriptional regulator compare
HGI48_RS12105 -1.0 -1.3 replication protein B compare
HGI48_RS20545 -1.0 -1.6 NUDIX domain-containing protein compare
HGI48_RS18030 -1.0 -4.1 catabolite repressor/activator compare
HGI48_RS01710 -1.0 -4.0 cystathionine beta-lyase compare
HGI48_RS21430 -1.0 -1.1 F0F1 ATP synthase subunit epsilon compare
HGI48_RS10650 -1.0 -2.6 mannose-6-phosphate isomerase compare
HGI48_RS17235 -1.0 -1.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HGI48_RS07510 -1.0 -2.4 phosphonate ABC transporter substrate-binding protein compare
HGI48_RS01465 -1.0 -4.2 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
HGI48_RS12670 -1.0 -2.5 Grx4 family monothiol glutaredoxin compare
HGI48_RS08575 -1.0 -1.7 DUF1795 domain-containing protein compare
HGI48_RS00925 -1.0 -2.7 3'-5' ssDNA/RNA exonuclease TatD compare
HGI48_RS05535 -1.0 -0.6 preprotein translocase subunit YajC compare
HGI48_RS04190 -1.0 -1.8 transposase compare
HGI48_RS08355 -1.0 -1.2 IS481 family transposase compare
HGI48_RS21235 -1.0 -4.2 nitrogen regulation protein NR(I) compare
HGI48_RS18115 -1.0 -2.0 ilvB operon leader peptide IvbL compare
HGI48_RS12630 -1.0 -0.8 pyridoxamine 5'-phosphate oxidase compare


Specific Phenotypes

For 1 genes in this experiment

For plant cv.Atlantic in Dickeya dianthicola 67-19

For plant cv.Atlantic across organisms