Experiment setATCH222 for Dickeya dianthicola 67-19

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
HGI48_RS04435 -4.1 -1.7 PTS glucose transporter subunit IIA compare
HGI48_RS05390 -4.0 -1.7 alkylphosphonate utilization protein compare
HGI48_RS01290 -3.9 -2.0 DNA-binding transcriptional regulator Fis compare
HGI48_RS16050 -3.6 -1.1 RNA polymerase-binding protein DksA compare
HGI48_RS06120 -3.5 -5.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS16355 -3.4 -2.6 recombinase RecA compare
HGI48_RS06515 -3.4 -1.9 succinate--CoA ligase subunit alpha compare
HGI48_RS10480 -3.0 -2.9 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS03655 -3.0 -1.5 MarR family transcriptional regulator compare
HGI48_RS19690 -3.0 -0.8 DUF2531 family protein compare
HGI48_RS01720 -3.0 -2.8 TonB system transport protein ExbD compare
HGI48_RS18520 -2.6 -1.6 adenylosuccinate synthase compare
HGI48_RS06775 -2.5 -1.8 glycosyltransferase family 2 protein compare
HGI48_RS10485 -2.5 -6.7 anthranilate synthase component 1 compare
HGI48_RS10140 -2.5 -3.1 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS19090 -2.5 -3.3 EF-P beta-lysylation protein EpmB compare
HGI48_RS11645 -2.4 -3.3 CesT family type III secretion system chaperone compare
HGI48_RS10170 -2.4 -4.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS06280 -2.4 -2.7 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS18110 -2.4 -1.7 thiamine ABC transporter ATP-binding protein ThiQ compare
HGI48_RS11530 -2.3 -2.3 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS14300 -2.2 -2.1 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS14680 -2.2 -1.5 membrane protein YpdK compare
HGI48_RS14525 -2.2 -3.2 penicillin-insensitive murein endopeptidase compare
HGI48_RS15185 -2.2 -1.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS01930 -2.2 -2.6 GNAT family N-acetyltransferase compare
HGI48_RS08390 -2.1 -2.0 helix-turn-helix transcriptional regulator compare
HGI48_RS14260 -2.1 -1.7 NADH-quinone oxidoreductase subunit L compare
HGI48_RS08835 -2.1 -2.4 hypothetical protein compare
HGI48_RS03555 -2.1 -2.0 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
HGI48_RS10475 -2.1 -4.8 anthranilate phosphoribosyltransferase compare
HGI48_RS17530 -2.1 -1.5 RES family NAD+ phosphorylase compare
HGI48_RS18600 -2.1 -5.3 ABC transporter permease compare
HGI48_RS10470 -2.0 -6.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS17805 -1.9 -1.8 YhcH/YjgK/YiaL family protein compare
HGI48_RS19785 -1.9 -2.2 Fe-S biogenesis protein NfuA compare
HGI48_RS14435 -1.9 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS10430 -1.9 -2.5 TonB system transport protein TonB compare
HGI48_RS12925 -1.9 -5.0 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS03650 -1.8 -1.9 HlyD family secretion protein compare
HGI48_RS13535 -1.8 -3.5 anti-sigma-28 factor FlgM compare
HGI48_RS00915 -1.8 -2.3 Sec-independent protein translocase subunit TatB compare
HGI48_RS03440 -1.8 -0.9 site-specific tyrosine recombinase XerD compare
HGI48_RS11920 -1.8 -2.1 glutamine amidotransferase compare
HGI48_RS10460 -1.8 -3.6 tryptophan synthase subunit alpha compare
HGI48_RS16680 -1.8 -1.9 acireductone dioxygenase compare
HGI48_RS18065 -1.8 -6.5 3-isopropylmalate dehydratase large subunit compare
HGI48_RS06090 -1.8 -2.4 arsenate reductase (glutaredoxin) compare
HGI48_RS20070 -1.8 -4.2 class I adenylate cyclase compare
HGI48_RS18340 -1.7 -2.6 homoserine kinase compare
HGI48_RS06440 -1.7 -1.8 YbfA family protein compare
HGI48_RS17565 -1.7 -4.2 alanine racemase compare
HGI48_RS13275 -1.7 -8.5 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS07295 -1.7 -5.0 addiction module antitoxin compare
HGI48_RS15285 -1.7 -3.2 DUF2057 family protein compare
HGI48_RS14285 -1.7 -1.3 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS10465 -1.7 -5.4 tryptophan synthase subunit beta compare
HGI48_RS00155 -1.7 -1.8 ABC transporter permease compare
HGI48_RS18550 -1.7 -2.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HGI48_RS19720 -1.7 -1.7 intracellular growth attenuator family protein compare
HGI48_RS13395 -1.6 -2.7 flagellar export chaperone FliS compare
HGI48_RS14405 -1.6 -8.8 amidophosphoribosyltransferase compare
HGI48_RS01210 -1.6 -6.6 phosphoribosylamine--glycine ligase compare
HGI48_RS11310 -1.6 -6.9 TerC family protein compare
HGI48_RS14970 -1.6 -2.2 hypothetical protein compare
HGI48_RS06635 -1.6 -5.8 UDP-glucose 4-epimerase GalE compare
HGI48_RS19940 -1.6 -6.6 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HGI48_RS01215 -1.6 -4.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS05095 -1.6 -2.2 DUF3461 family protein compare
HGI48_RS00785 -1.6 -1.5 rhodanese-like domain-containing protein compare
HGI48_RS17775 -1.6 -3.4 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS21655 -1.6 -1.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS18400 -1.5 -3.5 phosphoglycerate dehydrogenase compare
HGI48_RS11375 -1.5 -1.5 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS15535 -1.5 -6.5 IMP dehydrogenase compare
HGI48_RS13280 -1.5 -6.7 glucan biosynthesis protein G compare
HGI48_RS05650 -1.5 -1.8 cytochrome o ubiquinol oxidase subunit III compare
HGI48_RS01900 -1.5 -6.8 aspartate carbamoyltransferase compare
HGI48_RS17135 -1.5 -3.2 FlxA-like family protein compare
HGI48_RS02125 -1.5 -1.4 D-threitol dehydrogenase compare
HGI48_RS19095 -1.5 -2.2 DUF4156 domain-containing protein compare
HGI48_RS12865 -1.5 -3.1 AI-2E family transporter YdiK compare
HGI48_RS15295 -1.5 -2.4 DNA helicase IV compare
HGI48_RS12210 -1.5 -2.0 phage tail assembly protein compare
HGI48_RS04315 -1.5 -4.6 outer membrane protein assembly factor BamE compare
HGI48_RS06435 -1.5 -1.6 K(+)-transporting ATPase subunit F compare
HGI48_RS18070 -1.5 -2.5 3-isopropylmalate dehydratase small subunit compare
HGI48_RS13030 -1.5 -3.9 glutathione peroxidase compare
HGI48_RS09265 -1.5 -1.8 1-phosphofructokinase compare
HGI48_RS14465 -1.5 -2.9 tripartite tricarboxylate transporter TctB family protein compare
HGI48_RS19870 -1.5 -2.3 nickel-responsive transcriptional regulator NikR compare
HGI48_RS13650 -1.4 -1.1 glycoside hydrolase family 104 protein compare
HGI48_RS06495 -1.4 -5.0 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS14305 -1.4 -1.2 NADH-quinone oxidoreductase subunit B compare
HGI48_RS00630 -1.4 -3.2 P1 family peptidase compare
HGI48_RS01790 -1.4 -3.2 dTDP-4-dehydrorhamnose 3,5-epimerase family protein compare
HGI48_RS07925 -1.4 -4.2 TetR/AcrR family transcriptional regulator compare
HGI48_RS15750 -1.4 -8.9 phosphoribosylformylglycinamidine synthase compare
HGI48_RS13390 -1.4 -4.8 flagellar filament capping protein FliD compare
HGI48_RS13120 -1.4 -2.5 phosphotransferase compare
HGI48_RS21220 -1.4 -3.4 ribosome-dependent GTPase TypA compare
HGI48_RS15010 -1.4 -6.7 beta-galactosidase compare
HGI48_RS04450 -1.4 -3.8 cysteine synthase A compare
HGI48_RS04495 -1.4 -3.2 nitric oxide reductase transcriptional regulator NorR compare
HGI48_RS08275 -1.4 -1.6 hypothetical protein compare
HGI48_RS18805 -1.3 -2.4 hypothetical protein compare
HGI48_RS18245 -1.3 -3.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS11945 -1.3 -2.4 type II toxin-antitoxin system death-on-curing family toxin compare
HGI48_RS00685 -1.3 -1.9 nucleoid occlusion factor SlmA compare
HGI48_RS02785 -1.3 -2.6 DedA family protein compare
HGI48_RS10375 -1.3 -2.7 YchE family NAAT transporter compare
HGI48_RS20305 -1.3 -2.1 acetolactate synthase 2 small subunit compare
HGI48_RS11020 -1.3 -1.3 hypothetical protein compare
HGI48_RS17035 -1.3 -2.6 7-carboxy-7-deazaguanine synthase QueE compare
HGI48_RS10075 -1.3 -4.7 MAPEG family protein compare
HGI48_RS10035 -1.3 -2.2 hypothetical protein compare
HGI48_RS10550 -1.3 -1.5 electron transport complex subunit E compare
HGI48_RS20560 -1.3 -3.2 methyltransferase domain-containing protein compare
HGI48_RS17195 -1.3 -1.5 hypothetical protein compare
HGI48_RS17890 -1.3 -2.5 carboxylating nicotinate-nucleotide diphosphorylase compare
HGI48_RS15190 -1.3 -2.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS16250 -1.3 -5.3 bifunctional chorismate mutase/prephenate dehydratase compare
HGI48_RS05790 -1.3 -6.5 multidrug efflux RND transporter permease subunit compare
HGI48_RS09460 -1.3 -1.1 glutaredoxin, GrxA family compare
HGI48_RS08620 -1.3 -1.7 NAD(P)H-dependent oxidoreductase compare
HGI48_RS05795 -1.3 -3.8 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS05300 -1.3 -2.0 helix-turn-helix transcriptional regulator compare
HGI48_RS00755 -1.3 -2.0 putative lipopolysaccharide heptosyltransferase III compare
HGI48_RS20450 -1.3 -2.7 cell division protein FtsN compare
HGI48_RS17725 -1.2 -1.5 glycoside hydrolase family 88 protein compare
HGI48_RS04970 -1.2 -1.5 thymidylate synthase compare
HGI48_RS03510 -1.2 -7.1 polysaccharide biosynthesis protein compare
HGI48_RS00655 -1.2 -2.1 L-Ala-D/L-Glu epimerase compare
HGI48_RS09745 -1.2 -2.0 histidinol dehydrogenase compare
HGI48_RS20600 -1.2 -2.7 envelope stress sensor histidine kinase CpxA compare
HGI48_RS18020 -1.2 -1.4 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS05455 -1.2 -1.3 pyrimidine/purine nucleoside phosphorylase compare
HGI48_RS17000 -1.2 -3.5 uroporphyrinogen-III C-methyltransferase compare
HGI48_RS18060 -1.2 -4.7 3-isopropylmalate dehydrogenase compare
HGI48_RS02075 -1.2 -1.2 hypothetical protein compare
HGI48_RS14490 -1.2 -1.8 glutathione S-transferase compare
HGI48_RS15960 -1.2 -2.4 helix-turn-helix domain-containing protein compare
HGI48_RS19055 -1.2 -0.9 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS21235 -1.2 -4.3 nitrogen regulation protein NR(I) compare
HGI48_RS04530 -1.2 -2.3 FMN-binding protein compare
HGI48_RS02065 -1.2 -2.1 DUF1778 domain-containing protein compare
HGI48_RS06085 -1.2 -1.9 DnaA inactivator Hda compare
HGI48_RS08365 -1.2 -2.4 DNA sulfur modification protein DndE compare
HGI48_RS00040 -1.2 -1.9 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
HGI48_RS08760 -1.2 -2.4 endonuclease/exonuclease/phosphatase family protein compare
HGI48_RS11325 -1.2 -2.5 PTS mannose transporter subunit IID compare
HGI48_RS20045 -1.2 -1.2 tyrosine recombinase XerC compare
HGI48_RS20715 -1.1 -1.3 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG compare
HGI48_RS14350 -1.1 -2.9 acetate kinase compare
HGI48_RS08295 -1.1 -1.3 IS481 family transposase compare
HGI48_RS02290 -1.1 -1.7 hypothetical protein compare
HGI48_RS10335 -1.1 -3.2 formyltetrahydrofolate deformylase compare
HGI48_RS12475 -1.1 -2.2 TIGR01620 family protein compare
HGI48_RS04655 -1.1 -2.6 MipA/OmpV family protein compare
HGI48_RS04720 -1.1 -1.8 hypothetical protein compare
HGI48_RS06070 -1.1 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS20035 -1.1 -3.8 DNA helicase II compare
HGI48_RS20400 -1.1 -3.3 Si-specific NAD(P)(+) transhydrogenase compare
HGI48_RS00740 -1.1 -3.7 glycosyltransferase family 9 protein compare
HGI48_RS07685 -1.1 -2.3 energy transducer TonB compare
HGI48_RS17235 -1.1 -1.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HGI48_RS05640 -1.1 -1.9 protoheme IX farnesyltransferase compare
HGI48_RS13560 -1.1 -3.1 protein phosphatase CheZ compare
HGI48_RS10540 -1.1 -4.5 HTH-type transcriptional regulator CysB compare
HGI48_RS20270 -1.1 -4.9 ketol-acid reductoisomerase compare
HGI48_RS13235 -1.1 -3.7 dihydroorotase compare
HGI48_RS04870 -1.1 -2.2 hypothetical protein compare
HGI48_RS13100 -1.1 -1.8 glycine zipper 2TM domain-containing protein compare
HGI48_RS19930 -1.1 -1.8 CpmJ protein compare
HGI48_RS06795 -1.1 -1.4 glycosyltransferase compare
HGI48_RS18055 -1.1 -5.3 2-isopropylmalate synthase compare
HGI48_RS18605 -1.1 -3.0 ABC transporter ATP-binding protein compare
HGI48_RS19155 -1.1 -4.9 homoserine O-succinyltransferase compare
HGI48_RS12410 -1.1 -2.2 tRNA 2-thiocytidine(32) synthetase TtcA compare
HGI48_RS08900 -1.1 -2.7 outer membrane protein OmpX compare
HGI48_RS20250 -1.1 -0.9 peptidylprolyl isomerase compare
HGI48_RS16100 -1.1 -2.8 hypoxanthine phosphoribosyltransferase compare
HGI48_RS20990 -1.1 -1.8 DUF1471 domain-containing protein compare
HGI48_RS05695 -1.1 -4.5 endopeptidase La compare
HGI48_RS15015 -1.1 -5.3 glycosyl hydrolase 53 family protein compare
HGI48_RS12660 -1.0 -1.9 lactoylglutathione lyase compare
HGI48_RS09155 -1.0 -3.4 DUF3413 domain-containing protein compare
HGI48_RS09620 -1.0 -3.2 replication-associated recombination protein A compare
HGI48_RS07580 -1.0 -2.5 ABC transporter ATP-binding protein compare
HGI48_RS16320 -1.0 -1.6 tRNA-Arg compare
HGI48_RS09240 -1.0 -3.3 GTP-binding protein compare
HGI48_RS12720 -1.0 -1.7 EthD family reductase compare
HGI48_RS08465 -1.0 -0.8 transposase compare
HGI48_RS05715 -1.0 -2.1 7-cyano-7-deazaguanine synthase QueC compare
HGI48_RS12930 -1.0 -2.5 NADPH-dependent FMN reductase compare
HGI48_RS11230 -1.0 -2.8 fumarylacetoacetate hydrolase family protein compare
HGI48_RS05690 -1.0 -1.6 ATP-dependent protease ATP-binding subunit ClpX compare
HGI48_RS07055 -1.0 -0.7 IS481 family transposase compare
HGI48_RS13200 -1.0 -2.3 phosphate acyltransferase PlsX compare
HGI48_RS08765 -1.0 -3.6 ABC transporter permease compare


Specific Phenotypes

For 1 genes in this experiment

For plant cv.Atlantic in Dickeya dianthicola 67-19

For plant cv.Atlantic across organisms