Experiment setATCH221 for Dickeya dianthicola 67-19

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
HGI48_RS15185 -4.8 -2.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS10170 -4.0 -5.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS19720 -3.7 -2.4 intracellular growth attenuator family protein compare
HGI48_RS05700 -3.6 -2.2 DNA-binding protein HU-beta compare
HGI48_RS16050 -3.5 -1.2 RNA polymerase-binding protein DksA compare
HGI48_RS12630 -3.3 -2.1 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS14035 -2.9 -2.7 LD-carboxypeptidase compare
HGI48_RS10480 -2.8 -4.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS13210 -2.6 -3.3 23S rRNA accumulation protein YceD compare
HGI48_RS20045 -2.5 -3.3 tyrosine recombinase XerC compare
HGI48_RS10430 -2.4 -3.4 TonB system transport protein TonB compare
HGI48_RS19055 -2.3 -1.8 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS09745 -2.3 -4.1 histidinol dehydrogenase compare
HGI48_RS03440 -2.3 -2.0 site-specific tyrosine recombinase XerD compare
HGI48_RS03215 -2.3 -1.1 preprotein translocase subunit SecG compare
HGI48_RS15560 -2.2 -3.6 outer membrane protein assembly factor BamB compare
HGI48_RS06440 -2.2 -2.1 YbfA family protein compare
HGI48_RS17565 -2.2 -6.2 alanine racemase compare
HGI48_RS10485 -2.1 -7.0 anthranilate synthase component 1 compare
HGI48_RS11375 -2.1 -3.4 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS20560 -2.0 -5.1 methyltransferase domain-containing protein compare
HGI48_RS16450 -2.0 -4.1 GTPase compare
HGI48_RS10140 -1.9 -2.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS05560 -1.9 -2.4 transcriptional regulator NrdR compare
HGI48_RS13390 -1.9 -7.1 flagellar filament capping protein FliD compare
HGI48_RS12925 -1.9 -4.8 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS13235 -1.9 -8.0 dihydroorotase compare
HGI48_RS10470 -1.9 -5.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS10465 -1.9 -8.0 tryptophan synthase subunit beta compare
HGI48_RS13275 -1.8 -9.6 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS05650 -1.8 -2.9 cytochrome o ubiquinol oxidase subunit III compare
HGI48_RS13200 -1.8 -4.3 phosphate acyltransferase PlsX compare
HGI48_RS15190 -1.8 -4.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS04970 -1.8 -2.6 thymidylate synthase compare
HGI48_RS12580 -1.8 -6.8 orotidine-5'-phosphate decarboxylase compare
HGI48_RS14280 -1.8 -1.9 NADH-quinone oxidoreductase subunit NuoH compare
HGI48_RS16205 -1.7 -1.9 23S ribosomal RNA compare
HGI48_RS18265 -1.7 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HGI48_RS01210 -1.7 -7.2 phosphoribosylamine--glycine ligase compare
HGI48_RS20015 -1.7 -3.7 thioesterase family protein compare
HGI48_RS20600 -1.7 -4.2 envelope stress sensor histidine kinase CpxA compare
HGI48_RS03520 -1.7 -4.8 sugar transferase compare
HGI48_RS12475 -1.7 -3.7 TIGR01620 family protein compare
HGI48_RS01590 -1.6 -1.5 divisome-associated lipoprotein YraP compare
HGI48_RS15750 -1.6 -11.2 phosphoribosylformylglycinamidine synthase compare
HGI48_RS19925 -1.6 -1.8 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
HGI48_RS13280 -1.6 -8.2 glucan biosynthesis protein G compare
HGI48_RS10460 -1.6 -3.8 tryptophan synthase subunit alpha compare
HGI48_RS06120 -1.6 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS05390 -1.6 -1.4 alkylphosphonate utilization protein compare
HGI48_RS15535 -1.6 -5.7 IMP dehydrogenase compare
HGI48_RS18860 -1.6 -4.1 Fe-S cluster assembly protein NifU compare
HGI48_RS08965 -1.6 -1.8 hypothetical protein compare
HGI48_RS14255 -1.6 -1.6 NADH-quinone oxidoreductase subunit M compare
HGI48_RS14260 -1.6 -2.4 NADH-quinone oxidoreductase subunit L compare
HGI48_RS17005 -1.5 -2.5 phosphoadenylyl-sulfate reductase compare
HGI48_RS09600 -1.5 -3.1 thioredoxin-disulfide reductase compare
HGI48_RS19700 -1.5 -1.9 PilN domain-containing protein compare
HGI48_RS15275 -1.5 -2.7 heat shock protein HspQ compare
HGI48_RS06085 -1.5 -2.9 DnaA inactivator Hda compare
HGI48_RS09310 -1.5 -1.5 acyl carrier protein compare
HGI48_RS14610 -1.5 -3.0 Fe(3+)-siderophore ABC transporter permease compare
HGI48_RS06775 -1.5 -1.5 glycosyltransferase family 2 protein compare
HGI48_RS19435 -1.5 -1.1 sulfurtransferase complex subunit TusD compare
HGI48_RS19090 -1.5 -2.3 EF-P beta-lysylation protein EpmB compare
HGI48_RS09250 -1.4 -2.5 YkgJ family cysteine cluster protein compare
HGI48_RS21020 -1.4 -5.3 inorganic phosphate transporter PitA compare
HGI48_RS00800 -1.4 -2.2 serine O-acetyltransferase compare
HGI48_RS14615 -1.4 -2.5 iron-enterobactin ABC transporter permease compare
HGI48_RS03265 -1.4 -3.2 lipoprotein NlpI compare
HGI48_RS09090 -1.4 -1.8 CopG family ribbon-helix-helix protein compare
HGI48_RS16605 -1.4 -1.9 glutamate 5-kinase compare
HGI48_RS05790 -1.3 -7.9 multidrug efflux RND transporter permease subunit compare
HGI48_RS02370 -1.3 -2.7 5-formyltetrahydrofolate cyclo-ligase compare
HGI48_RS08685 -1.3 -2.5 malonyl-ACP O-methyltransferase BioC compare
HGI48_RS02025 -1.3 -1.5 DNA-binding transcriptional regulator compare
HGI48_RS20230 -1.3 -3.6 exopolyphosphatase compare
HGI48_RS12865 -1.3 -2.8 AI-2E family transporter YdiK compare
HGI48_RS16925 -1.3 -3.7 MetQ/NlpA family lipoprotein compare
HGI48_RS10975 -1.3 -3.5 redox-regulated ATPase YchF compare
HGI48_RS18400 -1.3 -4.2 phosphoglycerate dehydrogenase compare
HGI48_RS02700 -1.3 -2.6 FxsA family protein compare
HGI48_RS18520 -1.3 -1.3 adenylosuccinate synthase compare
HGI48_RS18030 -1.3 -6.2 catabolite repressor/activator compare
HGI48_RS13620 -1.3 -2.2 protein DsrB compare
HGI48_RS00680 -1.3 -2.1 orotate phosphoribosyltransferase compare
HGI48_RS01900 -1.3 -5.3 aspartate carbamoyltransferase compare
HGI48_RS10075 -1.3 -4.2 MAPEG family protein compare
HGI48_RS06250 -1.2 -2.3 zinc ribbon-containing protein compare
HGI48_RS21040 -1.2 -0.9 DUF1471 domain-containing protein compare
HGI48_RS05295 -1.2 -3.1 DoxX family protein compare
HGI48_RS19940 -1.2 -6.7 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HGI48_RS15010 -1.2 -6.3 beta-galactosidase compare
HGI48_RS06700 -1.2 -4.1 iron-sulfur cluster carrier protein ApbC compare
HGI48_RS21430 -1.2 -1.4 F0F1 ATP synthase subunit epsilon compare
HGI48_RS01215 -1.2 -3.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS19750 -1.2 -3.0 two-component system response regulator OmpR compare
HGI48_RS06340 -1.2 -5.0 asparagine synthase B compare
HGI48_RS06280 -1.2 -1.7 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS03655 -1.2 -1.3 MarR family transcriptional regulator compare
HGI48_RS10540 -1.2 -5.7 HTH-type transcriptional regulator CysB compare
HGI48_RS14350 -1.2 -1.9 acetate kinase compare
HGI48_RS14405 -1.2 -6.0 amidophosphoribosyltransferase compare
HGI48_RS06635 -1.2 -5.5 UDP-glucose 4-epimerase GalE compare
HGI48_RS21470 -1.2 -1.7 acyl carrier protein compare
HGI48_RS00965 -1.2 -2.1 YeeE/YedE family protein compare
HGI48_RS21720 -1.2 -2.1 membrane protein insertion efficiency factor YidD compare
HGI48_RS02385 -1.2 -3.7 phosphoserine phosphatase compare
HGI48_RS06455 -1.2 -1.5 type 2 GTP cyclohydrolase I compare
HGI48_RS18240 -1.2 -4.9 carbamoyl-phosphate synthase large subunit compare
HGI48_RS18340 -1.1 -2.2 homoserine kinase compare
HGI48_RS18535 -1.1 -3.2 FtsH protease activity modulator HflK compare
HGI48_RS06630 -1.1 -1.4 galactose-1-phosphate uridylyltransferase compare
HGI48_RS18245 -1.1 -2.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS11945 -1.1 -2.1 type II toxin-antitoxin system death-on-curing family toxin compare
HGI48_RS20050 -1.1 -3.5 DUF484 domain-containing protein compare
HGI48_RS01505 -1.1 -2.2 BolA family iron metabolism protein IbaG compare
HGI48_RS21380 -1.1 -3.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HGI48_RS18020 -1.1 -1.6 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS01715 -1.1 -4.6 tol-pal system-associated acyl-CoA thioesterase compare
HGI48_RS05740 -1.1 -2.8 P-II family nitrogen regulator compare
HGI48_RS18075 -1.1 -1.4 siderophore-interacting protein compare
HGI48_RS04315 -1.1 -4.0 outer membrane protein assembly factor BamE compare
HGI48_RS18065 -1.1 -4.6 3-isopropylmalate dehydratase large subunit compare
HGI48_RS03020 -1.1 -2.3 phage tail protein compare
HGI48_RS07650 -1.1 -1.3 hypothetical protein compare
HGI48_RS06545 -1.1 -2.0 Tol-Pal system protein TolQ compare
HGI48_RS00755 -1.1 -2.4 putative lipopolysaccharide heptosyltransferase III compare
HGI48_RS14490 -1.1 -2.1 glutathione S-transferase compare
HGI48_RS09265 -1.1 -1.7 1-phosphofructokinase compare
HGI48_RS07300 -1.1 -1.9 hydrogenase maturation peptidase HycI compare
HGI48_RS01050 -1.1 -1.3 tRNA-Thr compare
HGI48_RS21375 -1.1 -1.8 FMN-binding protein MioC compare
HGI48_RS16915 -1.1 -3.8 methionine ABC transporter ATP-binding protein MetN compare
HGI48_RS06480 -1.1 -2.0 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS10070 -1.1 -1.3 carboxy-S-adenosyl-L-methionine synthase CmoA compare
HGI48_RS21655 -1.0 -1.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS04590 -1.0 -2.7 multidrug efflux MFS transporter compare
HGI48_RS07925 -1.0 -1.8 TetR/AcrR family transcriptional regulator compare
HGI48_RS20400 -1.0 -2.8 Si-specific NAD(P)(+) transhydrogenase compare
HGI48_RS01845 -1.0 -1.6 ABC transporter permease compare
HGI48_RS16560 -1.0 -2.1 type I-E CRISPR-associated protein Cse2/CasB compare
HGI48_RS03770 -1.0 -1.8 myo-inosose-2 dehydratase compare
HGI48_RS15580 -1.0 -2.6 cytoskeleton protein RodZ compare
HGI48_RS14355 -1.0 -2.2 phosphate acetyltransferase compare
HGI48_RS18060 -1.0 -4.2 3-isopropylmalate dehydrogenase compare
HGI48_RS20225 -1.0 -5.5 ATP-dependent RNA helicase RhlB compare
HGI48_RS00740 -1.0 -2.9 glycosyltransferase family 9 protein compare
HGI48_RS20035 -1.0 -3.4 DNA helicase II compare
HGI48_RS13975 -1.0 -2.9 DNA cytosine methyltransferase compare
HGI48_RS10475 -1.0 -2.5 anthranilate phosphoribosyltransferase compare
HGI48_RS20805 -1.0 -1.4 4-oxalocrotonate tautomerase family protein compare
HGI48_RS06065 -1.0 -3.0 phosphoribosylglycinamide formyltransferase compare
HGI48_RS05775 -1.0 -2.0 Hha toxicity modulator TomB compare
HGI48_RS00790 -1.0 -1.2 protein-export chaperone SecB compare
HGI48_RS07875 -1.0 -2.9 metal ABC transporter permease compare
HGI48_RS21220 -1.0 -2.7 ribosome-dependent GTPase TypA compare
HGI48_RS08710 -1.0 -1.7 molybdenum cofactor biosynthesis protein B compare
HGI48_RS10900 -1.0 -3.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
HGI48_RS00530 -1.0 -3.2 hypothetical protein compare
HGI48_RS17750 -1.0 -2.5 ABC transporter ATP-binding protein compare
HGI48_RS21265 -1.0 -3.5 thiol:disulfide interchange protein DsbA compare
HGI48_RS01290 -1.0 -1.8 DNA-binding transcriptional regulator Fis compare
HGI48_RS08300 -1.0 -1.7 CcdB family protein compare
HGI48_RS15195 -0.9 -1.4 HAAAP family serine/threonine permease compare
HGI48_RS20090 -0.9 -2.7 protoheme IX biogenesis protein HemY compare
HGI48_RS01635 -0.9 -1.8 outer membrane channel protein TolC compare
HGI48_RS08775 -0.9 -1.9 ABC transporter ATP-binding protein compare
HGI48_RS10500 -0.9 -2.9 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS00345 -0.9 -2.1 nickel/cobalt efflux protein RcnA compare
HGI48_RS17090 -0.9 -2.9 2-hydroxy-3-oxopropionate reductase compare
HGI48_RS18055 -0.9 -5.0 2-isopropylmalate synthase compare
HGI48_RS02330 -0.9 -2.2 hypothetical protein compare
HGI48_RS03190 -0.9 -1.8 ribosome assembly RNA-binding protein YhbY compare
HGI48_RS20070 -0.9 -1.7 class I adenylate cyclase compare
HGI48_RS14720 -0.9 -3.0 type II secretion system major pseudopilin GspG compare
HGI48_RS20880 -0.9 -1.6 hypothetical protein compare
HGI48_RS06495 -0.9 -2.8 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS03475 -0.9 -1.4 winged helix-turn-helix transcriptional regulator compare
HGI48_RS20250 -0.9 -1.0 peptidylprolyl isomerase compare
HGI48_RS01445 -0.9 -1.6 RNA polymerase factor sigma-54 compare
HGI48_RS21235 -0.9 -3.8 nitrogen regulation protein NR(I) compare
HGI48_RS08540 -0.9 -1.6 H-NS histone family protein compare
HGI48_RS10575 -0.9 -1.2 electron transport complex subunit RsxA compare
HGI48_RS04495 -0.9 -2.5 nitric oxide reductase transcriptional regulator NorR compare
HGI48_RS14270 -0.9 -1.0 NADH-quinone oxidoreductase subunit J compare
HGI48_RS11730 -0.9 -2.2 type III secretion system inner membrane ring subunit SctD compare
HGI48_RS20465 -0.9 -4.3 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
HGI48_RS13110 -0.9 -2.0 alpha/beta hydrolase compare
HGI48_RS00135 -0.9 -3.8 alkylhydroperoxidase domain protein compare
HGI48_RS00165 -0.9 -2.4 valine--pyruvate transaminase compare
HGI48_RS16100 -0.9 -2.7 hypoxanthine phosphoribosyltransferase compare
HGI48_RS09640 -0.9 -3.4 MBL fold metallo-hydrolase compare
HGI48_RS06170 -0.9 -2.1 fluoride efflux transporter CrcB compare
HGI48_RS19440 -0.9 -2.9 transcriptional regulator compare
HGI48_RS08780 -0.9 -1.8 secretion protein HlyD compare
HGI48_RS04565 -0.9 -3.0 ribonuclease Z compare
HGI48_RS00735 -0.9 -0.9 glycosyltransferase family 4 protein compare
HGI48_RS02245 -0.9 -1.6 Lrp/AsnC ligand binding domain-containing protein compare
HGI48_RS02905 -0.8 -1.3 phage regulatory CII family protein compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in plant experiments

For plant cv.Atlantic across organisms