Experiment setATCH220 for Dickeya dianthicola 67-19

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
HGI48_RS15185 -4.7 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS02290 -2.6 -3.5 hypothetical protein compare
HGI48_RS16050 -2.4 -1.4 RNA polymerase-binding protein DksA compare
HGI48_RS10480 -2.4 -5.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS10460 -2.3 -7.1 tryptophan synthase subunit alpha compare
HGI48_RS18835 -2.2 -1.2 nitrogen fixation protein NifM compare
HGI48_RS17770 -2.2 -2.4 DeoR/GlpR transcriptional regulator compare
HGI48_RS20045 -2.1 -3.1 tyrosine recombinase XerC compare
HGI48_RS15190 -2.0 -5.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS08355 -2.0 -3.1 IS481 family transposase compare
HGI48_RS06120 -2.0 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS19055 -1.9 -2.0 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS13275 -1.9 -11.1 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS10170 -1.9 -4.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS03440 -1.9 -1.8 site-specific tyrosine recombinase XerD compare
HGI48_RS20560 -1.9 -5.6 methyltransferase domain-containing protein compare
HGI48_RS10430 -1.9 -4.1 TonB system transport protein TonB compare
HGI48_RS10475 -1.8 -5.0 anthranilate phosphoribosyltransferase compare
HGI48_RS06070 -1.8 -6.3 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS18245 -1.8 -6.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS15535 -1.8 -7.7 IMP dehydrogenase compare
HGI48_RS17805 -1.8 -2.2 YhcH/YjgK/YiaL family protein compare
HGI48_RS12580 -1.7 -5.6 orotidine-5'-phosphate decarboxylase compare
HGI48_RS17565 -1.7 -5.0 alanine racemase compare
HGI48_RS18400 -1.7 -5.3 phosphoglycerate dehydrogenase compare
HGI48_RS18070 -1.7 -4.7 3-isopropylmalate dehydratase small subunit compare
HGI48_RS18520 -1.7 -2.1 adenylosuccinate synthase compare
HGI48_RS13280 -1.7 -9.1 glucan biosynthesis protein G compare
HGI48_RS16355 -1.7 -3.0 recombinase RecA compare
HGI48_RS04970 -1.7 -3.1 thymidylate synthase compare
HGI48_RS10470 -1.7 -6.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS13235 -1.6 -7.1 dihydroorotase compare
HGI48_RS02385 -1.6 -5.2 phosphoserine phosphatase compare
HGI48_RS18020 -1.6 -3.1 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS15750 -1.6 -11.5 phosphoribosylformylglycinamidine synthase compare
HGI48_RS06635 -1.6 -9.2 UDP-glucose 4-epimerase GalE compare
HGI48_RS03520 -1.6 -5.6 sugar transferase compare
HGI48_RS03265 -1.6 -4.1 lipoprotein NlpI compare
HGI48_RS10485 -1.5 -5.3 anthranilate synthase component 1 compare
HGI48_RS12925 -1.5 -4.9 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS19435 -1.5 -1.2 sulfurtransferase complex subunit TusD compare
HGI48_RS00680 -1.5 -2.0 orotate phosphoribosyltransferase compare
HGI48_RS04435 -1.5 -1.9 PTS glucose transporter subunit IIA compare
HGI48_RS14210 -1.5 -2.1 HyaD/HybD family hydrogenase maturation endopeptidase compare
HGI48_RS03655 -1.5 -2.0 MarR family transcriptional regulator compare
HGI48_RS00785 -1.4 -2.3 rhodanese-like domain-containing protein compare
HGI48_RS19090 -1.4 -2.3 EF-P beta-lysylation protein EpmB compare
HGI48_RS16680 -1.4 -2.0 acireductone dioxygenase compare
HGI48_RS14300 -1.4 -2.2 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS01215 -1.4 -5.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS10140 -1.4 -3.2 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS11375 -1.4 -2.6 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS18500 -1.4 -2.3 YqgE/AlgH family protein compare
HGI48_RS18065 -1.4 -4.7 3-isopropylmalate dehydratase large subunit compare
HGI48_RS01410 -1.3 -1.7 ribosome-associated protein compare
HGI48_RS14405 -1.3 -7.5 amidophosphoribosyltransferase compare
HGI48_RS10975 -1.3 -4.4 redox-regulated ATPase YchF compare
HGI48_RS05560 -1.3 -2.5 transcriptional regulator NrdR compare
HGI48_RS15175 -1.3 -1.8 peptidylprolyl isomerase B compare
HGI48_RS04315 -1.3 -4.6 outer membrane protein assembly factor BamE compare
HGI48_RS03325 -1.3 -3.3 purine-nucleoside phosphorylase compare
HGI48_RS18340 -1.3 -3.1 homoserine kinase compare
HGI48_RS10090 -1.2 -2.7 dihydroneopterin triphosphate diphosphatase compare
HGI48_RS01900 -1.2 -6.2 aspartate carbamoyltransferase compare
HGI48_RS18240 -1.2 -7.0 carbamoyl-phosphate synthase large subunit compare
HGI48_RS21220 -1.2 -3.8 ribosome-dependent GTPase TypA compare
HGI48_RS07925 -1.2 -4.6 TetR/AcrR family transcriptional regulator compare
HGI48_RS01210 -1.2 -5.0 phosphoribosylamine--glycine ligase compare
HGI48_RS06280 -1.2 -2.9 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS19940 -1.2 -7.3 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HGI48_RS20035 -1.2 -3.6 DNA helicase II compare
HGI48_RS06340 -1.2 -6.7 asparagine synthase B compare
HGI48_RS05790 -1.2 -7.5 multidrug efflux RND transporter permease subunit compare
HGI48_RS05795 -1.2 -5.1 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS18860 -1.2 -3.1 Fe-S cluster assembly protein NifU compare
HGI48_RS12670 -1.2 -3.9 Grx4 family monothiol glutaredoxin compare
HGI48_RS10465 -1.2 -5.8 tryptophan synthase subunit beta compare
HGI48_RS00295 -1.2 -2.4 hypothetical protein compare
HGI48_RS10540 -1.1 -5.9 HTH-type transcriptional regulator CysB compare
HGI48_RS14285 -1.1 -1.8 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS18205 -1.1 -6.2 Co2+/Mg2+ efflux protein ApaG compare
HGI48_RS15470 -1.1 -2.6 type II secretion system minor pseudopilin GspI compare
HGI48_RS10990 -1.1 -2.7 AAA family ATPase compare
HGI48_RS17775 -1.1 -2.8 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS19785 -1.1 -1.8 Fe-S biogenesis protein NfuA compare
HGI48_RS20015 -1.0 -2.8 thioesterase family protein compare
HGI48_RS14580 -1.0 -1.3 tRNA-Arg compare
HGI48_RS01635 -1.0 -2.4 outer membrane channel protein TolC compare
HGI48_RS15010 -1.0 -6.1 beta-galactosidase compare
HGI48_RS19720 -1.0 -1.4 intracellular growth attenuator family protein compare
HGI48_RS06775 -1.0 -1.7 glycosyltransferase family 2 protein compare
HGI48_RS21265 -1.0 -3.8 thiol:disulfide interchange protein DsbA compare
HGI48_RS21430 -1.0 -1.8 F0F1 ATP synthase subunit epsilon compare
HGI48_RS12060 -1.0 -1.4 RNA chaperone ProQ compare
HGI48_RS20400 -1.0 -3.6 Si-specific NAD(P)(+) transhydrogenase compare
HGI48_RS20295 -1.0 -4.1 dihydroxy-acid dehydratase compare
HGI48_RS14350 -1.0 -2.1 acetate kinase compare
HGI48_RS13975 -1.0 -4.1 DNA cytosine methyltransferase compare
HGI48_RS13210 -1.0 -1.4 23S rRNA accumulation protein YceD compare
HGI48_RS08640 -0.9 -3.1 molybdopterin molybdotransferase MoeA compare
HGI48_RS06390 -0.9 -2.7 esterase compare
HGI48_RS10075 -0.9 -4.5 MAPEG family protein compare
HGI48_RS07295 -0.9 -3.3 addiction module antitoxin compare
HGI48_RS04305 -0.9 -2.0 type II toxin-antitoxin system RatA family toxin compare
HGI48_RS18845 -0.9 -1.8 nitrogen fixation protein NifW compare
HGI48_RS10520 -0.9 -2.2 hypothetical protein compare
HGI48_RS20230 -0.9 -4.8 exopolyphosphatase compare
HGI48_RS01195 -0.9 -4.0 YjaG family protein compare
HGI48_RS11530 -0.9 -1.4 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS00815 -0.9 -4.0 HTH-type transcriptional regulator MetR compare
HGI48_RS21020 -0.9 -4.6 inorganic phosphate transporter PitA compare
HGI48_RS03450 -0.9 -2.9 single-stranded-DNA-specific exonuclease RecJ compare
HGI48_RS10135 -0.9 -1.5 murein DD-endopeptidase MepM compare
HGI48_RS09155 -0.9 -4.3 DUF3413 domain-containing protein compare
HGI48_RS20070 -0.8 -1.4 class I adenylate cyclase compare
HGI48_RS14935 -0.8 -1.1 hypothetical protein compare
HGI48_RS14465 -0.8 -2.8 tripartite tricarboxylate transporter TctB family protein compare
HGI48_RS17235 -0.8 -1.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HGI48_RS09465 -0.8 -2.4 oxygen-insensitive NADPH nitroreductase compare
HGI48_RS06545 -0.8 -1.5 Tol-Pal system protein TolQ compare
HGI48_RS02905 -0.8 -1.6 phage regulatory CII family protein compare
HGI48_RS01715 -0.8 -4.5 tol-pal system-associated acyl-CoA thioesterase compare
HGI48_RS00740 -0.8 -3.2 glycosyltransferase family 9 protein compare
HGI48_RS05640 -0.8 -2.5 protoheme IX farnesyltransferase compare
HGI48_RS21460 -0.8 -2.5 beta-ketoacyl synthase chain length factor compare
HGI48_RS14680 -0.8 -1.3 membrane protein YpdK compare
HGI48_RS13590 -0.8 -5.9 chemotaxis protein CheA compare
HGI48_RS20270 -0.8 -4.7 ketol-acid reductoisomerase compare
HGI48_RS04450 -0.8 -3.2 cysteine synthase A compare
HGI48_RS04735 -0.8 -2.3 hypothetical protein compare
HGI48_RS18335 -0.8 -2.6 threonine synthase compare
HGI48_RS10050 -0.8 -1.1 VOC family protein compare
HGI48_RS06840 -0.8 -3.4 NADP-dependent phosphogluconate dehydrogenase compare
HGI48_RS10900 -0.8 -3.4 fumarate/nitrate reduction transcriptional regulator Fnr compare
HGI48_RS09265 -0.8 -2.2 1-phosphofructokinase compare
HGI48_RS15275 -0.8 -2.0 heat shock protein HspQ compare
HGI48_RS12865 -0.8 -2.3 AI-2E family transporter YdiK compare
HGI48_RS10335 -0.8 -3.2 formyltetrahydrofolate deformylase compare
HGI48_RS14445 -0.8 -1.7 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS21720 -0.8 -1.8 membrane protein insertion efficiency factor YidD compare
HGI48_RS06065 -0.8 -2.6 phosphoribosylglycinamide formyltransferase compare
HGI48_RS11020 -0.8 -1.5 hypothetical protein compare
HGI48_RS17190 -0.8 -1.9 IS4 family transposase compare
HGI48_RS12630 -0.8 -0.8 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS09210 -0.8 -1.8 hypothetical protein compare
HGI48_RS00565 -0.8 -2.2 ABC transporter permease compare
HGI48_RS14260 -0.7 -1.4 NADH-quinone oxidoreductase subunit L compare
HGI48_RS18055 -0.7 -4.6 2-isopropylmalate synthase compare
HGI48_RS16040 -0.7 -2.6 RNA 2',3'-cyclic phosphodiesterase compare
HGI48_RS01050 -0.7 -1.2 tRNA-Thr compare
HGI48_RS00755 -0.7 -2.2 putative lipopolysaccharide heptosyltransferase III compare
HGI48_RS12660 -0.7 -2.2 lactoylglutathione lyase compare
HGI48_RS07580 -0.7 -2.3 ABC transporter ATP-binding protein compare
HGI48_RS13200 -0.7 -1.8 phosphate acyltransferase PlsX compare
HGI48_RS19750 -0.7 -1.6 two-component system response regulator OmpR compare
HGI48_RS12590 -0.7 -2.4 LapA family protein compare
HGI48_RS19930 -0.7 -2.1 CpmJ protein compare
HGI48_RS06935 -0.7 -2.8 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
HGI48_RS14305 -0.7 -0.9 NADH-quinone oxidoreductase subunit B compare
HGI48_RS00095 -0.7 -1.0 PAS domain-containing protein compare
HGI48_RS10375 -0.7 -1.6 YchE family NAAT transporter compare
HGI48_RS08515 -0.7 -2.2 conjugal transfer protein TrbI compare
HGI48_RS17010 -0.7 -4.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
HGI48_RS10500 -0.7 -3.7 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS04350 -0.7 -1.2 YaiI/YqxD family protein compare
HGI48_RS20225 -0.7 -4.0 ATP-dependent RNA helicase RhlB compare
HGI48_RS14970 -0.7 -1.6 hypothetical protein compare
HGI48_RS10550 -0.7 -1.4 electron transport complex subunit E compare
HGI48_RS08380 -0.7 -3.3 DNA sulfur modification protein DndB compare
HGI48_RS04320 -0.7 -3.3 DNA repair protein RecN compare
HGI48_RS00960 -0.7 -1.1 YeeE/YedE family protein compare
HGI48_RS07650 -0.7 -0.9 hypothetical protein compare
HGI48_RS14200 -0.6 -1.3 hydrogenase maturation nickel metallochaperone HypA compare
HGI48_RS18060 -0.6 -2.7 3-isopropylmalate dehydrogenase compare
HGI48_RS18195 -0.6 -2.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HGI48_RS06480 -0.6 -1.8 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS08165 -0.6 -1.5 GNAT family N-acetyltransferase compare
HGI48_RS14610 -0.6 -1.8 Fe(3+)-siderophore ABC transporter permease compare
HGI48_RS09600 -0.6 -1.8 thioredoxin-disulfide reductase compare
HGI48_RS12990 -0.6 -3.4 aspartate/tyrosine/aromatic aminotransferase compare
HGI48_RS16055 -0.6 -2.9 tRNA glutamyl-Q(34) synthetase GluQRS compare
HGI48_RS14075 -0.6 -1.4 NAD(P)H-dependent oxidoreductase compare
HGI48_RS02865 -0.6 -1.8 FAD:protein FMN transferase ApbE compare
HGI48_RS18030 -0.6 -4.1 catabolite repressor/activator compare
HGI48_RS15015 -0.6 -4.2 glycosyl hydrolase 53 family protein compare
HGI48_RS13575 -0.6 -3.6 protein-glutamate O-methyltransferase CheR compare
HGI48_RS08365 -0.6 -1.8 DNA sulfur modification protein DndE compare
HGI48_RS10320 -0.6 -0.9 exodeoxyribonuclease III compare
HGI48_RS15830 -0.6 -3.5 elongation factor 4 compare
HGI48_RS15030 -0.6 -2.8 extracellular solute-binding protein compare
HGI48_RS11310 -0.6 -3.7 TerC family protein compare
HGI48_RS20395 -0.6 -3.3 HTH-type transcriptional repressor FabR compare
HGI48_RS00040 -0.6 -1.5 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
HGI48_RS20735 -0.6 -1.7 aspartate 1-decarboxylase autocleavage activator PanM compare
HGI48_RS12970 -0.6 -3.7 porin compare
HGI48_RS00375 -0.6 -2.2 HAD-IA family hydrolase compare
HGI48_RS01430 -0.6 -2.5 RNase adapter RapZ compare
HGI48_RS12055 -0.6 -1.7 carboxy terminal-processing peptidase compare
HGI48_RS00830 -0.6 -1.4 uridine phosphorylase compare
HGI48_RS20595 -0.6 -2.4 envelope stress response regulator transcription factor CpxR compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in plant experiments

For plant cv.Atlantic across organisms