Experiment setATCH218 for Dickeya dianthicola 67-19

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
HGI48_RS06475 -3.4 -2.0 citrate synthase compare
HGI48_RS09740 -3.1 -4.0 histidinol-phosphate transaminase compare
HGI48_RS12925 -3.0 -5.6 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS04970 -2.9 -4.4 thymidylate synthase compare
HGI48_RS14270 -2.9 -2.1 NADH-quinone oxidoreductase subunit J compare
HGI48_RS17925 -2.8 -3.2 DNA gyrase inhibitor YacG compare
HGI48_RS15190 -2.8 -4.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS12630 -2.8 -2.1 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS08740 -2.6 -2.2 ABC transporter ATP-binding protein compare
HGI48_RS12580 -2.4 -5.9 orotidine-5'-phosphate decarboxylase compare
HGI48_RS05260 -2.3 -1.4 transposase compare
HGI48_RS01210 -2.3 -9.1 phosphoribosylamine--glycine ligase compare
HGI48_RS21235 -2.3 -7.8 nitrogen regulation protein NR(I) compare
HGI48_RS12660 -2.1 -3.9 lactoylglutathione lyase compare
HGI48_RS01900 -2.1 -7.9 aspartate carbamoyltransferase compare
HGI48_RS01555 -2.0 -8.3 glutamate synthase small subunit compare
HGI48_RS08365 -2.0 -3.9 DNA sulfur modification protein DndE compare
HGI48_RS02665 -1.9 -1.8 helix-turn-helix domain-containing protein compare
HGI48_RS18245 -1.9 -5.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS09735 -1.9 -2.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS00850 -1.9 -8.9 phosphoenolpyruvate carboxylase compare
HGI48_RS18075 -1.9 -1.9 siderophore-interacting protein compare
HGI48_RS18400 -1.9 -5.4 phosphoglycerate dehydrogenase compare
HGI48_RS01560 -1.9 -12.6 glutamate synthase large subunit compare
HGI48_RS03555 -1.8 -2.1 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
HGI48_RS18510 -1.8 -10.0 class 1 fructose-bisphosphatase compare
HGI48_RS10140 -1.8 -3.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS13650 -1.8 -1.5 glycoside hydrolase family 104 protein compare
HGI48_RS15185 -1.7 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS07055 -1.7 -1.9 IS481 family transposase compare
HGI48_RS09745 -1.7 -3.3 histidinol dehydrogenase compare
HGI48_RS18520 -1.7 -1.8 adenylosuccinate synthase compare
HGI48_RS00795 -1.7 -1.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
HGI48_RS15750 -1.7 -10.8 phosphoribosylformylglycinamidine synthase compare
HGI48_RS00685 -1.7 -2.7 nucleoid occlusion factor SlmA compare
HGI48_RS18065 -1.7 -6.9 3-isopropylmalate dehydratase large subunit compare
HGI48_RS00355 -1.7 -8.5 argininosuccinate synthase compare
HGI48_RS20295 -1.7 -7.1 dihydroxy-acid dehydratase compare
HGI48_RS08375 -1.7 -11.2 DNA phosphorothioation system sulfurtransferase DndC compare
HGI48_RS17770 -1.6 -1.9 DeoR/GlpR transcriptional regulator compare
HGI48_RS07830 -1.6 -1.9 triphosphoribosyl-dephospho-CoA synthase compare
HGI48_RS17805 -1.6 -2.0 YhcH/YjgK/YiaL family protein compare
HGI48_RS14405 -1.6 -8.3 amidophosphoribosyltransferase compare
HGI48_RS18060 -1.6 -7.2 3-isopropylmalate dehydrogenase compare
HGI48_RS09730 -1.6 -1.4 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS04670 -1.6 -1.3 transposase compare
HGI48_RS08380 -1.6 -5.9 DNA sulfur modification protein DndB compare
HGI48_RS02575 -1.6 -5.1 heavy metal translocating P-type ATPase compare
HGI48_RS11530 -1.5 -2.3 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS01215 -1.5 -5.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS13235 -1.5 -4.6 dihydroorotase compare
HGI48_RS15615 -1.5 -2.1 Fe-S cluster assembly protein IscX compare
HGI48_RS09810 -1.5 -3.2 citrate lyase holo-[acyl-carrier protein] synthase compare
HGI48_RS06070 -1.5 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS12720 -1.5 -2.7 EthD family reductase compare
HGI48_RS01915 -1.5 -8.1 ornithine carbamoyltransferase compare
HGI48_RS18070 -1.5 -3.0 3-isopropylmalate dehydratase small subunit compare
HGI48_RS19100 -1.4 -5.8 glucose-6-phosphate isomerase compare
HGI48_RS20930 -1.4 -2.4 hypothetical protein compare
HGI48_RS10430 -1.4 -2.6 TonB system transport protein TonB compare
HGI48_RS15995 -1.4 -4.0 CdaR family transcriptional regulator compare
HGI48_RS21040 -1.4 -1.0 DUF1471 domain-containing protein compare
HGI48_RS10465 -1.4 -6.7 tryptophan synthase subunit beta compare
HGI48_RS06700 -1.4 -3.8 iron-sulfur cluster carrier protein ApbC compare
HGI48_RS07650 -1.4 -1.4 hypothetical protein compare
HGI48_RS01165 -1.4 -5.2 thiamine phosphate synthase compare
HGI48_RS18125 -1.4 -2.0 acetolactate synthase small subunit compare
HGI48_RS20270 -1.4 -6.2 ketol-acid reductoisomerase compare
HGI48_RS14260 -1.4 -2.7 NADH-quinone oxidoreductase subunit L compare
HGI48_RS18335 -1.3 -3.8 threonine synthase compare
HGI48_RS06340 -1.3 -5.9 asparagine synthase B compare
HGI48_RS02385 -1.3 -4.8 phosphoserine phosphatase compare
HGI48_RS15225 -1.3 -3.1 polyphosphate kinase 1 compare
HGI48_RS14850 -1.3 -5.2 DUF4338 domain-containing protein compare
HGI48_RS12670 -1.3 -3.0 Grx4 family monothiol glutaredoxin compare
HGI48_RS00680 -1.3 -1.7 orotate phosphoribosyltransferase compare
HGI48_RS06435 -1.3 -1.6 K(+)-transporting ATPase subunit F compare
HGI48_RS14445 -1.3 -2.3 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS05390 -1.3 -1.6 alkylphosphonate utilization protein compare
HGI48_RS17620 -1.3 -2.6 hypothetical protein compare
HGI48_RS12305 -1.3 -1.9 sodium-potassium/proton antiporter ChaA compare
HGI48_RS17355 -1.3 -2.8 YggT family protein compare
HGI48_RS08370 -1.3 -5.7 DNA sulfur modification protein DndD compare
HGI48_RS00790 -1.3 -1.2 protein-export chaperone SecB compare
HGI48_RS07850 -1.3 -2.3 AEC family transporter compare
HGI48_RS01895 -1.3 -2.6 aspartate carbamoyltransferase regulatory subunit compare
HGI48_RS18055 -1.3 -6.7 2-isopropylmalate synthase compare
HGI48_RS16070 -1.3 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HGI48_RS07470 -1.2 -2.8 phosphonate C-P lyase system protein PhnK compare
HGI48_RS16295 -1.2 -7.3 inner membrane protein YpjD compare
HGI48_RS04225 -1.2 -2.4 hypothetical protein compare
HGI48_RS06120 -1.2 -2.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS08300 -1.2 -2.5 CcdB family protein compare
HGI48_RS05660 -1.2 -2.1 cytochrome o ubiquinol oxidase subunit II compare
HGI48_RS10470 -1.2 -4.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS14280 -1.2 -1.7 NADH-quinone oxidoreductase subunit NuoH compare
HGI48_RS08730 -1.2 -5.6 iron ABC transporter substrate-binding protein compare
HGI48_RS16250 -1.2 -5.3 bifunctional chorismate mutase/prephenate dehydratase compare
HGI48_RS00265 -1.2 -2.1 mannitol-1-phosphate 5-dehydrogenase compare
HGI48_RS07350 -1.2 -2.7 4Fe-4S binding protein compare
HGI48_RS18205 -1.1 -5.7 Co2+/Mg2+ efflux protein ApaG compare
HGI48_RS10500 -1.1 -4.0 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS07175 -1.1 -2.7 helix-turn-helix transcriptional regulator compare
HGI48_RS14490 -1.1 -2.2 glutathione S-transferase compare
HGI48_RS21655 -1.1 -1.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS04315 -1.1 -3.9 outer membrane protein assembly factor BamE compare
HGI48_RS17235 -1.1 -2.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HGI48_RS18860 -1.1 -2.7 Fe-S cluster assembly protein NifU compare
HGI48_RS12060 -1.1 -1.0 RNA chaperone ProQ compare
HGI48_RS12970 -1.1 -5.5 porin compare
HGI48_RS08355 -1.1 -1.7 IS481 family transposase compare
HGI48_RS04435 -1.1 -1.2 PTS glucose transporter subunit IIA compare
HGI48_RS04905 -1.1 -4.3 oxidative damage protection protein compare
HGI48_RS01635 -1.1 -3.1 outer membrane channel protein TolC compare
HGI48_RS01505 -1.1 -2.4 BolA family iron metabolism protein IbaG compare
HGI48_RS18240 -1.1 -5.6 carbamoyl-phosphate synthase large subunit compare
HGI48_RS13540 -1.1 -4.3 flagellar export chaperone FlgN compare
HGI48_RS04915 -1.1 -3.0 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
HGI48_RS20175 -1.1 -4.2 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
HGI48_RS10410 -1.0 -5.5 cardiolipin synthase compare
HGI48_RS20045 -1.0 -2.0 tyrosine recombinase XerC compare
HGI48_RS20480 -1.0 -4.0 aquaporin family protein compare
HGI48_RS00815 -1.0 -4.2 HTH-type transcriptional regulator MetR compare
HGI48_RS18340 -1.0 -1.6 homoserine kinase compare
HGI48_RS04440 -1.0 -3.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HGI48_RS14605 -1.0 -2.2 enterobactin transporter EntS compare
HGI48_RS03265 -1.0 -2.2 lipoprotein NlpI compare
HGI48_RS10350 -1.0 -3.4 two-component system response regulator RssB compare
HGI48_RS08655 -1.0 -4.1 CidB/LrgB family autolysis modulator compare
HGI48_RS17015 -1.0 -4.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
HGI48_RS00095 -1.0 -0.9 PAS domain-containing protein compare
HGI48_RS15930 -1.0 -1.5 TSUP family transporter compare
HGI48_RS16560 -1.0 -1.6 type I-E CRISPR-associated protein Cse2/CasB compare
HGI48_RS08835 -1.0 -2.1 hypothetical protein compare
HGI48_RS14600 -1.0 -5.1 Fe2+-enterobactin ABC transporter substrate-binding protein compare
HGI48_RS20495 -1.0 -2.9 ferredoxin--NADP(+) reductase compare
HGI48_RS02815 -1.0 -2.6 YgjV family protein compare
HGI48_RS11590 -1.0 -3.0 type II toxin-antitoxin system RelE/ParE family toxin compare
HGI48_RS20580 -1.0 -1.2 transposase compare
HGI48_RS09630 -1.0 -2.7 Tat proofreading chaperone DmsD compare
HGI48_RS17765 -1.0 -3.5 TIGR00730 family Rossman fold protein compare
HGI48_RS04020 -1.0 -2.7 S26 family signal peptidase compare
HGI48_RS18370 -1.0 -2.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
HGI48_RS02580 -1.0 -2.3 Cd(II)/Pb(II)-responsive transcriptional regulator compare
HGI48_RS15610 -0.9 -4.0 aminopeptidase PepB compare
HGI48_RS16355 -0.9 -1.4 recombinase RecA compare
HGI48_RS16450 -0.9 -2.0 GTPase compare
HGI48_RS14035 -0.9 -1.5 LD-carboxypeptidase compare
HGI48_RS08705 -0.9 -2.4 GTP 3',8-cyclase MoaA compare
HGI48_RS20015 -0.9 -2.2 thioesterase family protein compare
HGI48_RS06250 -0.9 -1.7 zinc ribbon-containing protein compare
HGI48_RS16080 -0.9 -4.7 aspartate 1-decarboxylase compare
HGI48_RS01930 -0.9 -1.5 GNAT family N-acetyltransferase compare
HGI48_RS20880 -0.9 -1.7 hypothetical protein compare
HGI48_RS12990 -0.9 -3.2 aspartate/tyrosine/aromatic aminotransferase compare
HGI48_RS14970 -0.9 -1.9 hypothetical protein compare
HGI48_RS15060 -0.9 -3.5 iron-containing alcohol dehydrogenase family protein compare
HGI48_RS15985 -0.9 -3.0 sulfate ABC transporter permease subunit CysT compare
HGI48_RS01445 -0.9 -1.5 RNA polymerase factor sigma-54 compare
HGI48_RS15510 -0.9 -1.4 type II secretion system pilot lipoprotein GspS compare
HGI48_RS11720 -0.9 -1.3 type III secretion system gatekeeper subunit SctW compare
HGI48_RS00880 -0.9 -2.4 acetylglutamate kinase compare
HGI48_RS04320 -0.9 -3.2 DNA repair protein RecN compare
HGI48_RS16985 -0.9 -2.5 adenylyl-sulfate kinase compare
HGI48_RS03590 -0.9 -1.7 hypothetical protein compare
HGI48_RS03440 -0.9 -1.3 site-specific tyrosine recombinase XerD compare
HGI48_RS00845 -0.9 -2.8 hypothetical protein compare
HGI48_RS06735 -0.9 -1.1 protein-tyrosine-phosphatase compare
HGI48_RS00040 -0.9 -1.8 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
HGI48_RS05605 -0.9 -2.9 tRNA 4-thiouridine(8) synthase ThiI compare
HGI48_RS18145 -0.9 -1.1 hypothetical protein compare
HGI48_RS06015 -0.9 -2.0 ABC transporter ATP-binding protein compare
HGI48_RS03895 -0.9 -1.9 P-type conjugative transfer protein TrbL compare
HGI48_RS06270 -0.9 -2.9 glutamate/aspartate ABC transporter substrate-binding protein compare
HGI48_RS00875 -0.9 -2.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
HGI48_RS03760 -0.9 -3.5 Gfo/Idh/MocA family oxidoreductase compare
HGI48_RS14300 -0.9 -1.2 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS04725 -0.8 -1.7 HTH domain-containing protein compare
HGI48_RS06690 -0.8 -2.9 hypothetical protein compare
HGI48_RS15325 -0.8 -1.2 hypothetical protein compare
HGI48_RS02790 -0.8 -2.0 transcriptional regulator ExuR compare
HGI48_RS13230 -0.8 -2.9 antibiotic biosynthesis monooxygenase compare
HGI48_RS20735 -0.8 -2.1 aspartate 1-decarboxylase autocleavage activator PanM compare
HGI48_RS08735 -0.8 -4.0 iron ABC transporter permease compare
HGI48_RS10075 -0.8 -3.8 MAPEG family protein compare
HGI48_RS09715 -0.8 -1.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HGI48_RS21650 -0.8 -1.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
HGI48_RS03390 -0.8 -3.1 glycine cleavage system aminomethyltransferase GcvT compare
HGI48_RS01160 -0.8 -1.5 HesA/MoeB/ThiF family protein compare
HGI48_RS13015 -0.8 -1.9 EAL domain-containing protein compare
HGI48_RS01670 -0.8 -2.1 NAD(P)H-dependent oxidoreductase compare
HGI48_RS01545 -0.8 -3.7 stringent starvation protein A compare
HGI48_RS18345 -0.8 -4.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HGI48_RS16680 -0.8 -1.0 acireductone dioxygenase compare
HGI48_RS18865 -0.8 -1.7 glycoside hydrolase family protein compare
HGI48_RS00700 -0.8 -2.0 DNA repair protein RadC compare
HGI48_RS16725 -0.8 -2.4 amino acid ABC transporter permease compare
HGI48_RS00990 -0.8 -2.8 Trk system potassium transporter TrkH compare
HGI48_RS16605 -0.8 -1.2 glutamate 5-kinase compare
HGI48_RS01145 -0.8 -4.0 2-iminoacetate synthase ThiH compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in carbon source experiments

For carbon source Glycerol across organisms